Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 RAD23A-208ENST00000591499 1350 ntTSL 224.18■■□□□ 1.468e-12■■■■■ 36
XRN2Q9H0D6 ZNF414-204ENST00000594748 462 ntTSL 323.96■■□□□ 1.432e-6■■■■■ 36
XRN2Q9H0D6 EIF4G1-233ENST00000475721 1271 ntTSL 223.81■■□□□ 1.42e-6■■■■■ 36
XRN2Q9H0D6 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.392e-6■■■■■ 36
XRN2Q9H0D6 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.392e-6■■■■■ 36
XRN2Q9H0D6 RNH1-210ENST00000525701 1794 ntTSL 523.29■■□□□ 1.325e-6■■■■■ 36
XRN2Q9H0D6 PRKY-204ENST00000533551 1019 ntBASIC23.28■■□□□ 1.322e-6■■■■■ 36
XRN2Q9H0D6 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.312e-6■■■■■ 36
XRN2Q9H0D6 CSNK1E-207ENST00000430335 996 ntTSL 523.14■■□□□ 1.295e-6■■■■■ 36
XRN2Q9H0D6 KATNB1-202ENST00000562542 512 ntTSL 223.12■■□□□ 1.292e-6■■■■■ 36
XRN2Q9H0D6 FLII-209ENST00000487693 669 ntTSL 522.94■■□□□ 1.262e-6■■■■■ 36
XRN2Q9H0D6 SPSB3-207ENST00000565550 898 ntTSL 222.93■■□□□ 1.268e-12■■■■■ 36
XRN2Q9H0D6 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.84■■□□□ 1.252e-6■■■■■ 36
XRN2Q9H0D6 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.81■■□□□ 1.242e-6■■■■■ 36
XRN2Q9H0D6 SPSB3-211ENST00000569380 1781 ntTSL 222.6■■□□□ 1.218e-12■■■■■ 36
XRN2Q9H0D6 SPPL2B-205ENST00000589515 1733 ntTSL 522.58■■□□□ 1.212e-6■■■■■ 36
XRN2Q9H0D6 C5orf66-201ENST00000505828 561 ntTSL 422.55■■□□□ 1.22e-6■■■■■ 36
XRN2Q9H0D6 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.25e-6■■■■■ 36
XRN2Q9H0D6 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.195e-6■■■■■ 36
XRN2Q9H0D6 COPS8-203ENST00000409334 794 ntTSL 5 BASIC22.34■■□□□ 1.172e-6■■■■■ 36
XRN2Q9H0D6 COPS8-204ENST00000419015 584 ntTSL 322.34■■□□□ 1.172e-6■■■■■ 36
XRN2Q9H0D6 SPSB3-206ENST00000564709 2316 ntTSL 222.29■■□□□ 1.168e-12■■■■■ 36
XRN2Q9H0D6 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.155e-6■■■■■ 36
XRN2Q9H0D6 RNH1-213ENST00000528713 1202 ntTSL 1 (best)22.19■■□□□ 1.145e-6■■■■■ 36
XRN2Q9H0D6 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.132e-22■■■■■ 36
XRN2Q9H0D6 CSK-213ENST00000569462 534 ntTSL 422.06■■□□□ 1.122e-6■■■■■ 36
XRN2Q9H0D6 KATNB1-209ENST00000569018 668 ntTSL 222.05■■□□□ 1.122e-6■■■■■ 36
XRN2Q9H0D6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC21.95■■□□□ 1.12e-6■■■■■ 36
XRN2Q9H0D6 GALNS-206ENST00000564263 496 ntTSL 221.91■■□□□ 1.12e-6■■■■■ 36
XRN2Q9H0D6 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.098e-12■■■■■ 36
XRN2Q9H0D6 SIPA1L1-204ENST00000553453 521 ntTSL 521.74■■□□□ 1.072e-6■■■■■ 36
XRN2Q9H0D6 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.73■■□□□ 1.072e-6■■■■■ 36
XRN2Q9H0D6 SPSB3-204ENST00000563741 1746 ntTSL 521.66■■□□□ 1.068e-12■■■■■ 36
XRN2Q9H0D6 FLII-204ENST00000465046 699 ntTSL 221.59■■□□□ 1.052e-6■■■■■ 36
XRN2Q9H0D6 SIPA1L1-212ENST00000555989 569 ntTSL 421.52■■□□□ 1.042e-6■■■■■ 36
XRN2Q9H0D6 RAD23A-204ENST00000588329 1034 ntTSL 521.51■■□□□ 1.038e-12■■■■■ 36
XRN2Q9H0D6 IL11-204ENST00000590625 1028 ntTSL 2 BASIC21.5■■□□□ 1.032e-6■■■■■ 36
XRN2Q9H0D6 AC012313.3-201ENST00000600123 1765 ntTSL 1 (best)21.46■■□□□ 1.032e-6■■■■■ 36
XRN2Q9H0D6 KCNIP2-213ENST00000483385 736 ntTSL 321.44■■□□□ 1.022e-6■■■■■ 36
XRN2Q9H0D6 MECP2-216ENST00000627864 581 ntTSL 321.42■■□□□ 1.022e-6■■■■■ 36
XRN2Q9H0D6 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.022e-6■■■■■ 36
XRN2Q9H0D6 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.38■■□□□ 1.012e-6■■■■■ 36
XRN2Q9H0D6 UBAP1-205ENST00000626262 1753 ntTSL 221.38■■□□□ 1.015e-6■■■■■ 36
XRN2Q9H0D6 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 18e-12■■■■■ 36
XRN2Q9H0D6 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 12e-6■■■■■ 36
XRN2Q9H0D6 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.2■□□□□ 0.982e-6■■■■■ 36
XRN2Q9H0D6 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.988e-12■■■■■ 36
XRN2Q9H0D6 EIF4G1-230ENST00000460829 1804 ntTSL 221.14■□□□□ 0.972e-6■■■■■ 36
XRN2Q9H0D6 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.11■□□□□ 0.975e-6■■■■■ 36
XRN2Q9H0D6 ELAC2-218ENST00000584650 2087 ntTSL 221.05■□□□□ 0.962e-6■■■■■ 36
XRN2Q9H0D6 MED16-208ENST00000592373 927 ntTSL 321.02■□□□□ 0.962e-6■■■■■ 36
XRN2Q9H0D6 RIPOR1-210ENST00000565176 562 ntTSL 420.98■□□□□ 0.955e-6■■■■■ 36
XRN2Q9H0D6 RIPOR1-218ENST00000566920 584 ntTSL 420.98■□□□□ 0.955e-6■■■■■ 36
XRN2Q9H0D6 RAP1A-203ENST00000433097 666 ntTSL 520.92■□□□□ 0.942e-6■■■■■ 36
XRN2Q9H0D6 ZNF414-209ENST00000602128 443 ntTSL 220.86■□□□□ 0.932e-6■■■■■ 36
XRN2Q9H0D6 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.922e-6■■■■■ 36
XRN2Q9H0D6 RNH1-207ENST00000524464 624 ntTSL 520.73■□□□□ 0.915e-6■■■■■ 36
XRN2Q9H0D6 ZMIZ2-204ENST00000416856 616 ntTSL 520.7■□□□□ 0.92e-6■■■■■ 36
XRN2Q9H0D6 MFSD12-211ENST00000589995 777 ntTSL 320.61■□□□□ 0.892e-6■■■■■ 36
XRN2Q9H0D6 LRRC14-203ENST00000527730 978 ntTSL 220.41■□□□□ 0.862e-6■■■■■ 36
XRN2Q9H0D6 A1BG-202ENST00000595014 2301 ntTSL 220.32■□□□□ 0.842e-6■■■■■ 36
XRN2Q9H0D6 WDR4-207ENST00000492742 2205 ntTSL 220.28■□□□□ 0.842e-6■■■■■ 36
XRN2Q9H0D6 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.12■□□□□ 0.812e-6■■■■■ 36
XRN2Q9H0D6 METAP1-208ENST00000510209 559 ntTSL 420.1■□□□□ 0.813e-7■■■■■ 36
XRN2Q9H0D6 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC20.08■□□□□ 0.812e-6■■■■■ 36
XRN2Q9H0D6 SPSB3-202ENST00000563668 1509 ntTSL 220.03■□□□□ 0.88e-12■■■■■ 36
XRN2Q9H0D6 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.792e-6■■■■■ 36
XRN2Q9H0D6 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.778e-12■■■■■ 36
XRN2Q9H0D6 SIPA1L1-214ENST00000556780 591 ntTSL 519.79■□□□□ 0.762e-6■■■■■ 36
XRN2Q9H0D6 SIPA1L1-216ENST00000557151 744 ntTSL 319.79■□□□□ 0.762e-6■■■■■ 36
XRN2Q9H0D6 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.752e-6■■■■■ 36
XRN2Q9H0D6 KLHDC4-210ENST00000562913 875 ntTSL 319.67■□□□□ 0.742e-6■■■■■ 36
XRN2Q9H0D6 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.742e-6■■■■■ 36
XRN2Q9H0D6 ZNF414-205ENST00000595348 368 ntTSL 219.61■□□□□ 0.732e-6■■■■■ 36
XRN2Q9H0D6 EBF4-209ENST00000497450 444 ntTSL 319.58■□□□□ 0.722e-6■■■■■ 36
XRN2Q9H0D6 KDM6B-203ENST00000570632 1339 ntTSL 519.48■□□□□ 0.712e-6■■■■■ 36
XRN2Q9H0D6 YWHAB-203ENST00000428262 648 ntTSL 319.46■□□□□ 0.712e-6■■■■■ 36
XRN2Q9H0D6 ZNF414-203ENST00000593661 512 ntTSL 319.42■□□□□ 0.72e-6■■■■■ 36
XRN2Q9H0D6 MFSD12-212ENST00000591878 557 ntTSL 519.35■□□□□ 0.692e-6■■■■■ 36
XRN2Q9H0D6 FLII-216ENST00000577398 926 ntTSL 219.33■□□□□ 0.682e-6■■■■■ 36
XRN2Q9H0D6 POLR2E-210ENST00000592597 440 ntTSL 219.33■□□□□ 0.682e-6■■■■■ 36
XRN2Q9H0D6 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.672e-6■■■■■ 36
XRN2Q9H0D6 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.22■□□□□ 0.672e-6■■■■■ 36
XRN2Q9H0D6 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.665e-6■■■■■ 36
XRN2Q9H0D6 DRD4-202ENST00000528733 361 ntTSL 319.1■□□□□ 0.652e-6■■■■■ 36
XRN2Q9H0D6 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.658e-12■■■■■ 36
XRN2Q9H0D6 CSK-208ENST00000567123 556 ntTSL 419.05■□□□□ 0.642e-6■■■■■ 36
XRN2Q9H0D6 AGPAT3-206ENST00000422850 1003 ntTSL 519.04■□□□□ 0.642e-8■■■■■ 36
XRN2Q9H0D6 AGPAT3-210ENST00000457068 924 ntTSL 319.04■□□□□ 0.647e-7■■■■■ 36
XRN2Q9H0D6 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.641e-7■■■■■ 36
XRN2Q9H0D6 CBFA2T3-206ENST00000563920 1815 ntTSL 218.88■□□□□ 0.612e-6■■■■■ 36
XRN2Q9H0D6 GABPA-203ENST00000487266 780 ntTSL 218.83■□□□□ 0.61e-6■■■■■ 36
XRN2Q9H0D6 SPSB3-205ENST00000564070 714 ntTSL 318.78■□□□□ 0.68e-12■■■■■ 36
XRN2Q9H0D6 RAD23A-202ENST00000586375 894 ntTSL 318.69■□□□□ 0.588e-12■■■■■ 36
XRN2Q9H0D6 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.63■□□□□ 0.572e-6■■■■■ 36
XRN2Q9H0D6 METAP1-205ENST00000507537 718 ntTSL 318.58■□□□□ 0.563e-7■■■■■ 36
XRN2Q9H0D6 NPEPL1-209ENST00000533788 899 ntTSL 518.58■□□□□ 0.562e-6■■■■■ 36
XRN2Q9H0D6 PSD4-209ENST00000465917 910 ntTSL 218.55■□□□□ 0.562e-6■■■■■ 36
XRN2Q9H0D6 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.47■□□□□ 0.552e-6■■■■■ 36
XRN2Q9H0D6 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.46■□□□□ 0.552e-6■■■■■ 36
Retrieved 100 of 21,068 protein–RNA pairs in 325.4 ms