RNA–Protein interactions for RNA: ENST00000487266.1

GABPA-203, Transcript of GA binding protein transcription factor subunit alpha, humanhuman

TSL 2

Gene GABPA, Length 780 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPA-203ENST00000487266 NISCHQ9Y2I1 1504 aa39.15■■■■□ 3.86
GABPA-203ENST00000487266 CCDC180Q9P1Z9 1646 aa34.94■■■■□ 3.18
GABPA-203ENST00000487266 ABCC9O60706 1549 aa34.5■■■■□ 3.11
GABPA-203ENST00000487266 RB1CC1Q8TDY2 1594 aa32.99■■■□□ 2.87
GABPA-203ENST00000487266 NACADO15069 1562 aa32.86■■■□□ 2.85
GABPA-203ENST00000487266 DCAF8L2P0C7V8 631 aa32.8■■■□□ 2.84
GABPA-203ENST00000487266 ZCCHC6Q5VYS8 1495 aaKnown RBP32.59■■■□□ 2.81
GABPA-203ENST00000487266 MYO15BQ96JP2 1530 aa32.51■■■□□ 2.8
GABPA-203ENST00000487266 UNC13AQ9UPW8 1703 aa32.4■■■□□ 2.78
GABPA-203ENST00000487266 DCAF1Q9Y4B6 1507 aa32.31■■■□□ 2.76
GABPA-203ENST00000487266 PABPN1Q86U42 306 aaKnown RBP eCLIP32.16■■■□□ 2.74
GABPA-203ENST00000487266 BICRAQ9NZM4 1560 aa32.08■■■□□ 2.73
GABPA-203ENST00000487266 SCRIBQ14160 1630 aa31.95■■■□□ 2.71
GABPA-203ENST00000487266 DNAJC5BQ9UF47 199 aa31.89■■■□□ 2.7
GABPA-203ENST00000487266 SHROOM4Q9ULL8 1493 aa31.56■■■□□ 2.64
GABPA-203ENST00000487266 EIF4G1Q04637 1599 aaKnown RBP31.24■■■□□ 2.59
GABPA-203ENST00000487266 CC2D2AQ9P2K1 1620 aa31.19■■■□□ 2.58
GABPA-203ENST00000487266 CECR2Q9BXF3 1484 aa30.98■■■□□ 2.55
GABPA-203ENST00000487266 SMARCA4P51532 1647 aa30.48■■■□□ 2.47
GABPA-203ENST00000487266 BAZ1AQ9NRL2 1556 aaPredicted RBP30.35■■■□□ 2.45
GABPA-203ENST00000487266 ATAD2BQ9ULI0 1458 aa30.34■■■□□ 2.45
GABPA-203ENST00000487266 NCAPD3P42695 1498 aa30.31■■■□□ 2.44
GABPA-203ENST00000487266 SMARCA2P51531 1590 aa30.25■■■□□ 2.43
GABPA-203ENST00000487266 MROH2BQ7Z745 1585 aa30.22■■■□□ 2.43
GABPA-203ENST00000487266 HMGXB3Q12766 1538 aa30.18■■■□□ 2.42
GABPA-203ENST00000487266 PEG3Q9GZU2 1588 aa30.13■■■□□ 2.41
GABPA-203ENST00000487266 BAZ1BQ9UIG0 1483 aaKnown RBP30.08■■■□□ 2.41
GABPA-203ENST00000487266 WIZO95785 1651 aa29.92■■■□□ 2.38
GABPA-203ENST00000487266 NESP48681 1621 aa29.81■■■□□ 2.36
GABPA-203ENST00000487266 RSF1Q96T23 1441 aaPredicted RBP29.73■■■□□ 2.35
GABPA-203ENST00000487266 ERCC6Q03468 1493 aa29.7■■■□□ 2.35
GABPA-203ENST00000487266 LAMC3Q9Y6N6 1575 aa29.59■■■□□ 2.33
GABPA-203ENST00000487266 TOP2AP11388 1531 aaKnown RBP29.52■■■□□ 2.32
GABPA-203ENST00000487266 KIF21AQ7Z4S6 1674 aa29.47■■■□□ 2.31
GABPA-203ENST00000487266 CUX2O14529 1486 aa29.44■■■□□ 2.3
GABPA-203ENST00000487266 CADPSQ9ULU8 1353 aa29.41■■■□□ 2.3
GABPA-203ENST00000487266 THOC2Q8NI27 1593 aaKnown RBP29.41■■■□□ 2.3
GABPA-203ENST00000487266 PDS5BQ9NTI5 1447 aa29.34■■■□□ 2.29
GABPA-203ENST00000487266 CFTRP13569 1480 aa29.21■■■□□ 2.27
GABPA-203ENST00000487266 CCDC88BA6NC98 1476 aa29.17■■■□□ 2.26
GABPA-203ENST00000487266 MRC2Q9UBG0 1479 aa29.14■■■□□ 2.26
GABPA-203ENST00000487266 FANCD2Q9BXW9 1451 aa29.13■■■□□ 2.25
GABPA-203ENST00000487266 CEP164Q9UPV0 1460 aa29.11■■■□□ 2.25
GABPA-203ENST00000487266 WDR62O43379 1518 aa29.07■■■□□ 2.24
GABPA-203ENST00000487266 PRDM2Q13029 1718 aa29.07■■■□□ 2.24
GABPA-203ENST00000487266 URB2Q14146 1524 aaKnown RBP28.89■■■□□ 2.22
GABPA-203ENST00000487266 DNAJC5Q9H3Z4 198 aa28.82■■■□□ 2.2
GABPA-203ENST00000487266 SUPT5HO00267 1087 aaKnown RBP28.78■■■□□ 2.2
GABPA-203ENST00000487266 TOPBP1Q92547 1522 aa28.65■■■□□ 2.18
GABPA-203ENST00000487266 DNMBPQ6XZF7 1577 aa28.59■■■□□ 2.17
GABPA-203ENST00000487266 ABCC8Q09428 1581 aa28.51■■■□□ 2.15
GABPA-203ENST00000487266 IFT140Q96RY7 1462 aa28.48■■■□□ 2.15
GABPA-203ENST00000487266 ZNF608Q9ULD9 1512 aaPredicted RBP28.48■■■□□ 2.15
GABPA-203ENST00000487266 POLA1P09884 1462 aaPredicted RBP28.4■■■□□ 2.14
GABPA-203ENST00000487266 TARBP1Q13395 1621 aaKnown RBP28.38■■■□□ 2.13
GABPA-203ENST00000487266 CUX1P39880 1505 aa28.38■■■□□ 2.13
GABPA-203ENST00000487266 EIF4G3O43432 1585 aaKnown RBP28.37■■■□□ 2.13
GABPA-203ENST00000487266 RAD54L2Q9Y4B4 1467 aa28.31■■■□□ 2.12
GABPA-203ENST00000487266 FGD5Q6ZNL6 1462 aa28.3■■■□□ 2.12
GABPA-203ENST00000487266 AQRO60306 1485 aaKnown RBP eCLIP28.25■■■□□ 2.11
GABPA-203ENST00000487266 SOGA1O94964 1423 aa28.21■■■□□ 2.11
GABPA-203ENST00000487266 WDR97A6NE52 1622 aa28.14■■■□□ 2.09
GABPA-203ENST00000487266 TDRD9Q8NDG6 1382 aaKnown RBP28.13■■■□□ 2.09
GABPA-203ENST00000487266 OSCARQ8IYS5 282 aa28.11■■■□□ 2.09
GABPA-203ENST00000487266 CHD1O14646 1710 aa28.09■■■□□ 2.09
GABPA-203ENST00000487266 SYNJ1O43426 1573 aa28.07■■■□□ 2.08
GABPA-203ENST00000487266 BIVM-ERCC5R4GMW8 1640 aa28.04■■■□□ 2.08
GABPA-203ENST00000487266 WRNQ14191 1432 aaPredicted RBP eCLIP28.02■■■□□ 2.08
GABPA-203ENST00000487266 TOP2BQ02880 1626 aa28.02■■■□□ 2.08
GABPA-203ENST00000487266 SNAPC4Q5SXM2 1469 aa28■■■□□ 2.07
GABPA-203ENST00000487266 PBRM1Q86U86 1689 aa27.97■■■□□ 2.07
GABPA-203ENST00000487266 ABCA10Q8WWZ4 1543 aa27.97■■■□□ 2.07
GABPA-203ENST00000487266 ABCA5Q8WWZ7 1642 aa27.94■■■□□ 2.06
GABPA-203ENST00000487266 GRIN2BQ13224 1484 aa27.92■■■□□ 2.06
GABPA-203ENST00000487266 FBLN2P98095 1184 aa27.92■■■□□ 2.06
GABPA-203ENST00000487266 GAPVD1Q14C86 1478 aa27.9■■■□□ 2.06
GABPA-203ENST00000487266 MAGI1Q96QZ7 1491 aaPredicted RBP27.88■■■□□ 2.05
GABPA-203ENST00000487266 RIMBP3CA6NJZ7 1639 aa27.86■■■□□ 2.05
GABPA-203ENST00000487266 RIMBP3BA6NNM3 1639 aa27.86■■■□□ 2.05
GABPA-203ENST00000487266 RIMBP3Q9UFD9 1639 aa27.86■■■□□ 2.05
GABPA-203ENST00000487266 TRIM41Q8WV44 630 aa27.86■■■□□ 2.05
GABPA-203ENST00000487266 ARHGEF11O15085 1522 aa27.8■■■□□ 2.04
GABPA-203ENST00000487266 SYNJ2O15056 1496 aa27.79■■■□□ 2.04
GABPA-203ENST00000487266 CHMP7Q8WUX9 453 aaPredicted RBP27.74■■■□□ 2.03
GABPA-203ENST00000487266 CLASP1Q7Z460 1538 aa27.72■■■□□ 2.03
GABPA-203ENST00000487266 ADAMTS12P58397 1594 aa27.71■■■□□ 2.03
GABPA-203ENST00000487266 ERICH3Q5RHP9 1530 aa27.62■■■□□ 2.01
GABPA-203ENST00000487266 GRIN2AQ12879 1464 aa27.6■■■□□ 2.01
GABPA-203ENST00000487266 ARAP1Q96P48 1450 aa27.57■■■□□ 2
GABPA-203ENST00000487266 FHAD1B1AJZ9 1412 aa27.54■■■□□ 2
GABPA-203ENST00000487266 CEP170Q5SW79 1584 aa27.54■■■□□ 2
GABPA-203ENST00000487266 CYB5RLQ6IPT4 315 aa27.49■■□□□ 1.99
GABPA-203ENST00000487266 NUP160Q12769 1436 aa27.48■■□□□ 1.99
GABPA-203ENST00000487266 KIF27Q86VH2 1401 aa27.42■■□□□ 1.98
GABPA-203ENST00000487266 ERCC6L2Q5T890 1561 aa27.39■■□□□ 1.97
GABPA-203ENST00000487266 IGF1RP08069 1367 aa27.35■■□□□ 1.97
GABPA-203ENST00000487266 SHROOM2Q13796 1616 aa27.34■■□□□ 1.97
GABPA-203ENST00000487266 CUL7Q14999 1698 aa27.34■■□□□ 1.97
GABPA-203ENST00000487266 RUSC2Q8N2Y8 1516 aa27.31■■□□□ 1.96
GABPA-203ENST00000487266 CARMIL1Q5VZK9 1371 aa27.18■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms