Protein–RNA interactions for Protein: O15371

EIF3D, Eukaryotic translation initiation factor 3 subunit D, humanhuman

Known RBP eCLIP

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3DO15371 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 12e-6■■□□□ 11.4
EIF3DO15371 BPTF-208ENST00000544778 7573 ntTSL 520.74■□□□□ 0.912e-6■■□□□ 11.4
EIF3DO15371 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.142e-6■■□□□ 11.4
EIF3DO15371 BPTF-205ENST00000424123 8295 ntAPPRIS ALT2 TSL 1 (best)6.56□□□□□ -1.362e-6■■□□□ 11.4
EIF3DO15371 USP34-211ENST00000472706 556 ntTSL 45.18□□□□□ -1.585e-7■■□□□ 11.4
EIF3DO15371 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.642e-6■■□□□ 11.4
EIF3DO15371 SHANK2-218ENST00000601538 9062 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.261e-6■□□□□ 11.3
EIF3DO15371 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.96□□□□□ -1.782e-6■□□□□ 11.3
EIF3DO15371 PLXNB1-210ENST00000467913 688 ntTSL 218.63■□□□□ 0.571e-7■□□□□ 11.3
EIF3DO15371 PLXNB1-213ENST00000473996 1034 ntTSL 216.41■□□□□ 0.221e-7■□□□□ 11.3
EIF3DO15371 PLXNB1-208ENST00000465117 627 ntTSL 315.27■□□□□ 0.041e-7■□□□□ 11.3
EIF3DO15371 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC20.18■□□□□ 0.822e-7■□□□□ 11.3
EIF3DO15371 POLR3E-211ENST00000564750 2327 ntTSL 219.07■□□□□ 0.642e-7■□□□□ 11.3
EIF3DO15371 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.69■□□□□ 0.582e-7■□□□□ 11.3
EIF3DO15371 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.63■□□□□ 0.572e-7■□□□□ 11.3
EIF3DO15371 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.272e-7■□□□□ 11.3
EIF3DO15371 POLR3E-208ENST00000564061 4800 ntTSL 1 (best)13.33□□□□□ -0.282e-7■□□□□ 11.3
EIF3DO15371 POLR3E-219ENST00000615879 3655 ntTSL 2 BASIC12.74□□□□□ -0.372e-7■□□□□ 11.3
EIF3DO15371 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.026e-7■□□□□ 11.2
EIF3DO15371 ELP1-204ENST00000537196 3823 ntTSL 1 (best) BASIC13.03□□□□□ -0.326e-7■□□□□ 11.2
EIF3DO15371 BPTF-203ENST00000335221 2627 ntTSL 5 BASIC8.32□□□□□ -1.081e-6■□□□□ 11.2
EIF3DO15371 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.163e-6■□□□□ 11.2
EIF3DO15371 SRRT-213ENST00000611405 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.313e-6■□□□□ 11.2
EIF3DO15371 SRRT-215ENST00000614484 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.393e-6■□□□□ 11.2
EIF3DO15371 SRRT-216ENST00000618262 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.393e-6■□□□□ 11.2
EIF3DO15371 SLC9A3R1-205ENST00000583369 841 ntTSL 325.26■■□□□ 1.635e-15■□□□□ 11.2
EIF3DO15371 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.255e-15■□□□□ 11.2
EIF3DO15371 ADSSL1-207ENST00000555486 1012 ntTSL 527.88■■■□□ 2.059e-6■□□□□ 11.1
EIF3DO15371 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC25.75■■□□□ 1.719e-6■□□□□ 11.1
EIF3DO15371 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC25.53■■□□□ 1.689e-6■□□□□ 11.1
EIF3DO15371 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.639e-6■□□□□ 11.1
EIF3DO15371 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.241e-10■□□□□ 11.1
EIF3DO15371 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.66■■□□□ 1.069e-6■□□□□ 11.1
EIF3DO15371 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.41■■□□□ 1.029e-6■□□□□ 11.1
EIF3DO15371 GTPBP2-206ENST00000452781 681 ntTSL 521.35■■□□□ 1.019e-6■□□□□ 11.1
EIF3DO15371 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.05■□□□□ 0.969e-6■□□□□ 11.1
EIF3DO15371 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.71■□□□□ 0.919e-6■□□□□ 11.1
EIF3DO15371 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.729e-6■□□□□ 11.1
EIF3DO15371 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.43■□□□□ 0.79e-6■□□□□ 11.1
EIF3DO15371 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.679e-6■□□□□ 11.1
EIF3DO15371 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC17.18■□□□□ 0.349e-6■□□□□ 11.1
EIF3DO15371 ADSSL1-203ENST00000553540 1791 ntTSL 216.83■□□□□ 0.289e-6■□□□□ 11.1
EIF3DO15371 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.189e-6■□□□□ 11.1
EIF3DO15371 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC15.78■□□□□ 0.129e-6■□□□□ 11.1
EIF3DO15371 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC15.48■□□□□ 0.079e-6■□□□□ 11.1
EIF3DO15371 MCF2L-218ENST00000442625 2710 ntTSL 1 (best)15.11■□□□□ 0.019e-6■□□□□ 11.1
EIF3DO15371 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC15.06■□□□□ 09e-6■□□□□ 11.1
EIF3DO15371 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.119e-6■□□□□ 11.1
EIF3DO15371 ATP6V0A1-205ENST00000544137 3047 ntTSL 1 (best) BASIC11.95□□□□□ -0.59e-6■□□□□ 11.1
EIF3DO15371 PGK1-201ENST00000373316 4887 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.589e-6■□□□□ 11.1
EIF3DO15371 SMC3-201ENST00000361804 4114 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.599e-6■□□□□ 11.1
EIF3DO15371 ATP6V0A1-202ENST00000343619 4128 ntAPPRIS ALT1 TSL 1 (best) BASIC10.38□□□□□ -0.759e-6■□□□□ 11.1
EIF3DO15371 ATP6V0A1-201ENST00000264649 4110 ntAPPRIS P4 TSL 1 (best) BASIC10.12□□□□□ -0.799e-6■□□□□ 11.1
EIF3DO15371 PGK1-205ENST00000491291 702 ntTSL 59.88□□□□□ -0.839e-6■□□□□ 11.1
EIF3DO15371 ANKRD17-208ENST00000559367 539 ntTSL 57.75□□□□□ -1.179e-6■□□□□ 11.1
EIF3DO15371 DST-217ENST00000518398 1778 ntTSL 1 (best)5.4□□□□□ -1.549e-6■□□□□ 11.1
EIF3DO15371 ATP6V0A1-223ENST00000589759 502 ntTSL 35.15□□□□□ -1.599e-6■□□□□ 11.1
EIF3DO15371 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.19□□□□□ -1.741e-10■□□□□ 11.1
EIF3DO15371 ATP6V0A1-216ENST00000587882 780 ntTSL 23.92□□□□□ -1.789e-6■□□□□ 11.1
EIF3DO15371 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.1■■□□□ 1.939e-7■□□□□ 11.1
EIF3DO15371 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC25.71■■□□□ 1.719e-7■□□□□ 11.1
EIF3DO15371 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.589e-7■□□□□ 11.1
EIF3DO15371 DAZAP1-204ENST00000586579 619 ntTSL 324.61■■□□□ 1.539e-7■□□□□ 11.1
EIF3DO15371 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.399e-7■□□□□ 11.1
EIF3DO15371 DAZAP1-210ENST00000592453 1021 ntTSL 516.56■□□□□ 0.249e-7■□□□□ 11.1
EIF3DO15371 DST-206ENST00000370788 17657 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.732e-6■□□□□ 11.1
EIF3DO15371 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.752e-6■□□□□ 11.1
EIF3DO15371 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC6.03□□□□□ -1.442e-6■□□□□ 11.1
EIF3DO15371 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.87□□□□□ -1.792e-6■□□□□ 11.1
EIF3DO15371 CHD4-208ENST00000540960 892 ntTSL 59.13□□□□□ -0.954e-6■□□□□ 11.1
EIF3DO15371 CHD4-205ENST00000536301 107 ntTSL 35.4□□□□□ -1.544e-6■□□□□ 11.1
EIF3DO15371 FANCA-211ENST00000563510 633 ntTSL 511.35□□□□□ -0.599e-8■□□□□ 11.1
EIF3DO15371 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.621e-6■□□□□ 11.1
EIF3DO15371 HUWE1-204ENST00000426907 4805 ntTSL 59.63□□□□□ -0.872e-6■□□□□ 11.1
EIF3DO15371 TMEM14C-202ENST00000466421 472 ntTSL 216.02■□□□□ 0.162e-6■□□□□ 11.1
EIF3DO15371 TMEM14C-203ENST00000467415 899 ntTSL 315.76■□□□□ 0.112e-6■□□□□ 11.1
EIF3DO15371 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.072e-6■□□□□ 11.1
EIF3DO15371 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.012e-6■□□□□ 11.1
EIF3DO15371 SUPT6H-202ENST00000347486 5569 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.833e-6■□□□□ 11.1
EIF3DO15371 SUPT6H-201ENST00000314616 6523 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.153e-6■□□□□ 11.1
EIF3DO15371 SEPT9-247ENST00000593189 817 ntTSL 512.33□□□□□ -0.444e-7■□□□□ 11.1
EIF3DO15371 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.21■□□□□ 0.352e-6■□□□□ 11
EIF3DO15371 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.12■□□□□ 0.172e-6■□□□□ 11
EIF3DO15371 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.78□□□□□ -0.042e-6■□□□□ 11
EIF3DO15371 SHANK2-209ENST00000445654 522 ntTSL 314.58□□□□□ -0.082e-6■□□□□ 11
EIF3DO15371 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC13.27□□□□□ -0.292e-6■□□□□ 11
EIF3DO15371 SHANK2-205ENST00000412252 1376 ntTSL 513.07□□□□□ -0.322e-6■□□□□ 11
EIF3DO15371 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC12.78□□□□□ -0.362e-6■□□□□ 11
EIF3DO15371 SHANK2-201ENST00000338508 7271 ntTSL 5 BASIC12.07□□□□□ -0.482e-6■□□□□ 11
EIF3DO15371 SHANK2-208ENST00000426687 460 ntTSL 59.37□□□□□ -0.912e-6■□□□□ 11
EIF3DO15371 GALM-205ENST00000444351 834 ntTSL 516.22■□□□□ 0.197e-8■□□□□ 11
EIF3DO15371 GALM-202ENST00000410063 1023 ntTSL 3 BASIC13.77□□□□□ -0.217e-8■□□□□ 11
EIF3DO15371 GALM-201ENST00000272252 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.547e-8■□□□□ 11
EIF3DO15371 GALM-204ENST00000434934 724 ntTSL 34.34□□□□□ -1.717e-8■□□□□ 11
EIF3DO15371 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.26□□□□□ -1.412e-6■□□□□ 11
EIF3DO15371 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC5.14□□□□□ -1.592e-6■□□□□ 11
EIF3DO15371 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.632e-6■□□□□ 11
EIF3DO15371 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.812e-6■□□□□ 11
EIF3DO15371 NOP56-213ENST00000480992 929 ntTSL 513.61□□□□□ -0.233e-10■□□□□ 11
EIF3DO15371 NOP56-215ENST00000490753 640 ntTSL 210.2□□□□□ -0.783e-10■□□□□ 11
Retrieved 100 of 4,069 protein–RNA pairs in 84.8 ms