RNA–Protein interactions for RNA: ENST00000351097.9

USP25-203, Transcript of ubiquitin specific peptidase 25, humanhuman

TSL 1 (best) BASIC

Gene USP25, Length 2,158 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP25-203ENST00000351097 NISCHQ9Y2I1 1504 aa51.75■■■■■ 5.87
USP25-203ENST00000351097 CCDC180Q9P1Z9 1646 aa44.76■■■■■ 4.76
USP25-203ENST00000351097 ZCCHC6Q5VYS8 1495 aaKnown RBP43.58■■■■■ 4.57
USP25-203ENST00000351097 SHROOM4Q9ULL8 1493 aa42.75■■■■■ 4.43
USP25-203ENST00000351097 DCAF8L2P0C7V8 631 aa42.72■■■■■ 4.43
USP25-203ENST00000351097 DCAF1Q9Y4B6 1507 aa42.7■■■■■ 4.43
USP25-203ENST00000351097 ABCC9O60706 1549 aa42.06■■■■■ 4.32
USP25-203ENST00000351097 MYO15BQ96JP2 1530 aa41.98■■■■■ 4.31
USP25-203ENST00000351097 NACADO15069 1562 aa41.6■■■■■ 4.25
USP25-203ENST00000351097 SCRIBQ14160 1630 aa41.39■■■■■ 4.22
USP25-203ENST00000351097 SUPT5HO00267 1087 aaKnown RBP41.37■■■■■ 4.21
USP25-203ENST00000351097 RB1CC1Q8TDY2 1594 aa41.13■■■■■ 4.18
USP25-203ENST00000351097 RSF1Q96T23 1441 aaPredicted RBP40.4■■■■■ 4.06
USP25-203ENST00000351097 UNC13AQ9UPW8 1703 aa40.36■■■■■ 4.05
USP25-203ENST00000351097 CECR2Q9BXF3 1484 aa40.27■■■■■ 4.04
USP25-203ENST00000351097 MROH2BQ7Z745 1585 aa40.06■■■■■ 4
USP25-203ENST00000351097 BICRAQ9NZM4 1560 aa39.98■■■■□ 3.99
USP25-203ENST00000351097 BAZ1AQ9NRL2 1556 aaPredicted RBP39.88■■■■□ 3.97
USP25-203ENST00000351097 CHIC1Q5VXU3 224 aa39.84■■■■□ 3.97
USP25-203ENST00000351097 PABPN1Q86U42 306 aaKnown RBP eCLIP39.84■■■■□ 3.97
USP25-203ENST00000351097 WIZO95785 1651 aa39.75■■■■□ 3.95
USP25-203ENST00000351097 SMARCA4P51532 1647 aa39.66■■■■□ 3.94
USP25-203ENST00000351097 TOP2AP11388 1531 aaKnown RBP39.28■■■■□ 3.88
USP25-203ENST00000351097 PEG3Q9GZU2 1588 aa39.12■■■■□ 3.85
USP25-203ENST00000351097 SMARCA2P51531 1590 aa38.97■■■■□ 3.83
USP25-203ENST00000351097 CCDC88BA6NC98 1476 aa38.96■■■■□ 3.83
USP25-203ENST00000351097 ATAD2BQ9ULI0 1458 aa38.91■■■■□ 3.82
USP25-203ENST00000351097 EIF4G1Q04637 1599 aaKnown RBP38.86■■■■□ 3.81
USP25-203ENST00000351097 TRIM41Q8WV44 630 aa38.8■■■■□ 3.8
USP25-203ENST00000351097 BAZ1BQ9UIG0 1483 aaKnown RBP38.7■■■■□ 3.79
USP25-203ENST00000351097 NCAPD3P42695 1498 aa38.46■■■■□ 3.75
USP25-203ENST00000351097 LOC105371045A0A1W2PR82 267 aa38.41■■■■□ 3.74
USP25-203ENST00000351097 HMGXB3Q12766 1538 aa38.4■■■■□ 3.74
USP25-203ENST00000351097 HRCP23327 699 aa38.35■■■■□ 3.73
USP25-203ENST00000351097 ABCC8Q09428 1581 aa38.35■■■■□ 3.73
USP25-203ENST00000351097 PCGF6Q9BYE7 350 aa38.27■■■■□ 3.72
USP25-203ENST00000351097 FAM9AQ8IZU1 332 aaPredicted RBP38.19■■■■□ 3.7
USP25-203ENST00000351097 CC2D2AQ9P2K1 1620 aa38.01■■■■□ 3.68
USP25-203ENST00000351097 WRNQ14191 1432 aaPredicted RBP eCLIP37.98■■■■□ 3.67
USP25-203ENST00000351097 SYNJ1O43426 1573 aa37.83■■■■□ 3.65
USP25-203ENST00000351097 CFTRP13569 1480 aa37.77■■■■□ 3.64
USP25-203ENST00000351097 SOGA1O94964 1423 aa37.75■■■■□ 3.63
USP25-203ENST00000351097 TRIM26Q12899 539 aaPredicted RBP37.71■■■■□ 3.63
USP25-203ENST00000351097 EHMT2Q96KQ7 1210 aa37.7■■■■□ 3.63
USP25-203ENST00000351097 EEA1Q15075 1411 aa37.63■■■■□ 3.61
USP25-203ENST00000351097 RUSC2Q8N2Y8 1516 aa37.6■■■■□ 3.61
USP25-203ENST00000351097 TOP2BQ02880 1626 aa37.58■■■■□ 3.61
USP25-203ENST00000351097 CADPSQ9ULU8 1353 aa37.53■■■■□ 3.6
USP25-203ENST00000351097 BIVM-ERCC5R4GMW8 1640 aa37.5■■■■□ 3.59
USP25-203ENST00000351097 CSRNP3Q8WYN3 585 aa37.48■■■■□ 3.59
USP25-203ENST00000351097 PRDM2Q13029 1718 aa37.47■■■■□ 3.59
USP25-203ENST00000351097 CUX1P39880 1505 aa37.4■■■■□ 3.58
USP25-203ENST00000351097 PPARGC1BQ86YN6 1023 aaKnown RBP37.36■■■■□ 3.57
USP25-203ENST00000351097 GOLGA3Q08378 1498 aa37.19■■■■□ 3.54
USP25-203ENST00000351097 TNIKQ9UKE5 1360 aa37.19■■■■□ 3.54
USP25-203ENST00000351097 CEP164Q9UPV0 1460 aa37.14■■■■□ 3.54
USP25-203ENST00000351097 KIF21BO75037 1637 aa37.14■■■■□ 3.54
USP25-203ENST00000351097 FANCD2Q9BXW9 1451 aa37.13■■■■□ 3.53
USP25-203ENST00000351097 NESP48681 1621 aa37.12■■■■□ 3.53
USP25-203ENST00000351097 DNAJC5BQ9UF47 199 aa37.1■■■■□ 3.53
USP25-203ENST00000351097 UBTFP17480 764 aaKnown RBP37.07■■■■□ 3.53
USP25-203ENST00000351097 CEP162Q5TB80 1403 aa37.07■■■■□ 3.52
USP25-203ENST00000351097 LAMC3Q9Y6N6 1575 aa37.01■■■■□ 3.52
USP25-203ENST00000351097 KIF27Q86VH2 1401 aa36.95■■■■□ 3.5
USP25-203ENST00000351097 ZEB1P37275 1124 aaPredicted RBP36.94■■■■□ 3.5
USP25-203ENST00000351097 RAPGEF2Q9Y4G8 1499 aa36.94■■■■□ 3.5
USP25-203ENST00000351097 FGD5Q6ZNL6 1462 aa36.91■■■■□ 3.5
USP25-203ENST00000351097 PRXQ9BXM0 1461 aa36.86■■■■□ 3.49
USP25-203ENST00000351097 DNMBPQ6XZF7 1577 aa36.84■■■■□ 3.49
USP25-203ENST00000351097 ERICH3Q5RHP9 1530 aa36.79■■■■□ 3.48
USP25-203ENST00000351097 CUX2O14529 1486 aa36.78■■■■□ 3.48
USP25-203ENST00000351097 TOPBP1Q92547 1522 aa36.78■■■■□ 3.48
USP25-203ENST00000351097 PDS5BQ9NTI5 1447 aa36.75■■■■□ 3.47
USP25-203ENST00000351097 POLA1P09884 1462 aaPredicted RBP36.67■■■■□ 3.46
USP25-203ENST00000351097 URB2Q14146 1524 aaKnown RBP36.66■■■■□ 3.46
USP25-203ENST00000351097 CLIP1P30622 1438 aa36.65■■■■□ 3.46
USP25-203ENST00000351097 IGF1RP08069 1367 aa36.63■■■■□ 3.45
USP25-203ENST00000351097 RAD54L2Q9Y4B4 1467 aa36.59■■■■□ 3.45
USP25-203ENST00000351097 KIF21AQ7Z4S6 1674 aa36.58■■■■□ 3.45
USP25-203ENST00000351097 ABCA10Q8WWZ4 1543 aa36.56■■■■□ 3.44
USP25-203ENST00000351097 CARMIL1Q5VZK9 1371 aa36.42■■■■□ 3.42
USP25-203ENST00000351097 RANGAP1P46060 587 aaPredicted RBP36.42■■■■□ 3.42
USP25-203ENST00000351097 VPS8Q8N3P4 1428 aa36.39■■■■□ 3.42
USP25-203ENST00000351097 WDR97A6NE52 1622 aa36.36■■■■□ 3.41
USP25-203ENST00000351097 MRC2Q9UBG0 1479 aa36.26■■■■□ 3.39
USP25-203ENST00000351097 ARAP1Q96P48 1450 aa36.24■■■■□ 3.39
USP25-203ENST00000351097 ABCA5Q8WWZ7 1642 aa36.21■■■■□ 3.39
USP25-203ENST00000351097 TDRD9Q8NDG6 1382 aaKnown RBP36.2■■■■□ 3.39
USP25-203ENST00000351097 TTBK1Q5TCY1 1321 aaPredicted RBP36.2■■■■□ 3.39
USP25-203ENST00000351097 CUL7Q14999 1698 aa36.18■■■■□ 3.38
USP25-203ENST00000351097 TARBP1Q13395 1621 aaKnown RBP36.17■■■■□ 3.38
USP25-203ENST00000351097 ARHGAP35Q9NRY4 1499 aa36.14■■■■□ 3.38
USP25-203ENST00000351097 GAPVD1Q14C86 1478 aa36.13■■■■□ 3.38
USP25-203ENST00000351097 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.08■■■■□ 3.37
USP25-203ENST00000351097 CCER1Q8TC90 406 aaPredicted RBP36.05■■■■□ 3.36
USP25-203ENST00000351097 WDR62O43379 1518 aa36.04■■■■□ 3.36
USP25-203ENST00000351097 APLP2Q06481 763 aa36.01■■■■□ 3.36
USP25-203ENST00000351097 ERCC6Q03468 1493 aa35.95■■■■□ 3.35
USP25-203ENST00000351097 AQRO60306 1485 aaKnown RBP eCLIP35.88■■■■□ 3.33
USP25-203ENST00000351097 IFT140Q96RY7 1462 aa35.88■■■■□ 3.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms