RNA–Protein interactions for RNA: ENST00000442625.2

MCF2L-218, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 1 (best)

Gene MCF2L, Length 2,710 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-218ENST00000442625 NISCHQ9Y2I1 1504 aa28.24■■■□□ 2.11
MCF2L-218ENST00000442625 SHROOM4Q9ULL8 1493 aa24.61■■□□□ 1.53
MCF2L-218ENST00000442625 SUPT5HO00267 1087 aaKnown RBP24.23■■□□□ 1.47
MCF2L-218ENST00000442625 ZCCHC6Q5VYS8 1495 aaKnown RBP23.92■■□□□ 1.42
MCF2L-218ENST00000442625 DCAF8L2P0C7V8 631 aa23.74■■□□□ 1.39
MCF2L-218ENST00000442625 CCDC180Q9P1Z9 1646 aa23.71■■□□□ 1.39
MCF2L-218ENST00000442625 MYO15BQ96JP2 1530 aa23.65■■□□□ 1.38
MCF2L-218ENST00000442625 HRCP23327 699 aa23.61■■□□□ 1.37
MCF2L-218ENST00000442625 CHIC1Q5VXU3 224 aa23.54■■□□□ 1.36
MCF2L-218ENST00000442625 PCGF6Q9BYE7 350 aa23.5■■□□□ 1.35
MCF2L-218ENST00000442625 PPARGC1BQ86YN6 1023 aaKnown RBP23.41■■□□□ 1.34
MCF2L-218ENST00000442625 PELP1Q8IZL8 1130 aaKnown RBP23.16■■□□□ 1.3
MCF2L-218ENST00000442625 LOC105371045A0A1W2PR82 267 aa23.12■■□□□ 1.29
MCF2L-218ENST00000442625 DCAF1Q9Y4B6 1507 aa22.99■■□□□ 1.27
MCF2L-218ENST00000442625 MYT1Q01538 1121 aa22.95■■□□□ 1.27
MCF2L-218ENST00000442625 TRIM26Q12899 539 aaPredicted RBP22.66■■□□□ 1.22
MCF2L-218ENST00000442625 ABCC9O60706 1549 aa22.6■■□□□ 1.21
MCF2L-218ENST00000442625 SCRIBQ14160 1630 aa22.56■■□□□ 1.2
MCF2L-218ENST00000442625 RSF1Q96T23 1441 aaPredicted RBP22.52■■□□□ 1.2
MCF2L-218ENST00000442625 EHMT2Q96KQ7 1210 aa22.51■■□□□ 1.19
MCF2L-218ENST00000442625 FAM9AQ8IZU1 332 aaPredicted RBP22.46■■□□□ 1.19
MCF2L-218ENST00000442625 TRIM41Q8WV44 630 aa22.44■■□□□ 1.18
MCF2L-218ENST00000442625 RB1CC1Q8TDY2 1594 aa22.35■■□□□ 1.17
MCF2L-218ENST00000442625 TTBK1Q5TCY1 1321 aaPredicted RBP22.22■■□□□ 1.15
MCF2L-218ENST00000442625 SCAF1Q9H7N4 1312 aaKnown RBP22.22■■□□□ 1.15
MCF2L-218ENST00000442625 ZEB1P37275 1124 aaPredicted RBP22.19■■□□□ 1.14
MCF2L-218ENST00000442625 CECR2Q9BXF3 1484 aa22.16■■□□□ 1.14
MCF2L-218ENST00000442625 MROH2BQ7Z745 1585 aa22.06■■□□□ 1.12
MCF2L-218ENST00000442625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.95■■□□□ 1.1
MCF2L-218ENST00000442625 WIZO95785 1651 aa21.94■■□□□ 1.1
MCF2L-218ENST00000442625 NACADO15069 1562 aa21.94■■□□□ 1.1
MCF2L-218ENST00000442625 PRKCSHP14314 528 aaPredicted RBP21.81■■□□□ 1.08
MCF2L-218ENST00000442625 CCER1Q8TC90 406 aaPredicted RBP21.8■■□□□ 1.08
MCF2L-218ENST00000442625 NEUROD1Q13562 356 aa21.78■■□□□ 1.08
MCF2L-218ENST00000442625 SLC24A1O60721 1099 aa21.76■■□□□ 1.07
MCF2L-218ENST00000442625 BAZ1AQ9NRL2 1556 aaPredicted RBP21.71■■□□□ 1.07
MCF2L-218ENST00000442625 ACIN1Q9UKV3 1341 aaKnown RBP21.7■■□□□ 1.06
MCF2L-218ENST00000442625 EIF4G1Q04637 1599 aaKnown RBP21.63■■□□□ 1.05
MCF2L-218ENST00000442625 ABCC8Q09428 1581 aa21.62■■□□□ 1.05
MCF2L-218ENST00000442625 DIEXFQ68CQ4 756 aaKnown RBP21.6■■□□□ 1.05
MCF2L-218ENST00000442625 GTF3C3Q9Y5Q9 886 aa21.6■■□□□ 1.05
MCF2L-218ENST00000442625 CCDC88BA6NC98 1476 aa21.58■■□□□ 1.05
MCF2L-218ENST00000442625 TOP2AP11388 1531 aaKnown RBP21.5■■□□□ 1.03
MCF2L-218ENST00000442625 SOGA1O94964 1423 aa21.48■■□□□ 1.03
MCF2L-218ENST00000442625 SMARCA4P51532 1647 aa21.44■■□□□ 1.02
MCF2L-218ENST00000442625 CEP162Q5TB80 1403 aa21.44■■□□□ 1.02
MCF2L-218ENST00000442625 SMARCA2P51531 1590 aa21.43■■□□□ 1.02
MCF2L-218ENST00000442625 CENPBP07199 599 aaPredicted RBP21.4■■□□□ 1.02
MCF2L-218ENST00000442625 ERICH6Q7L0X2 663 aa21.39■■□□□ 1.01
MCF2L-218ENST00000442625 YTHDC1Q96MU7 727 aaKnown RBP21.39■■□□□ 1.01
MCF2L-218ENST00000442625 UBTFP17480 764 aaKnown RBP21.38■■□□□ 1.01
MCF2L-218ENST00000442625 RUSC2Q8N2Y8 1516 aa21.38■■□□□ 1.01
MCF2L-218ENST00000442625 WRNQ14191 1432 aaPredicted RBP eCLIP21.36■■□□□ 1.01
MCF2L-218ENST00000442625 APLP2Q06481 763 aa21.34■■□□□ 1.01
MCF2L-218ENST00000442625 CSRNP3Q8WYN3 585 aa21.34■■□□□ 1.01
MCF2L-218ENST00000442625 PABPN1Q86U42 306 aaKnown RBP eCLIP21.32■■□□□ 1
MCF2L-218ENST00000442625 TNIKQ9UKE5 1360 aa21.32■■□□□ 1
MCF2L-218ENST00000442625 UNC13AQ9UPW8 1703 aa21.27■■□□□ 1
MCF2L-218ENST00000442625 ZNF316A6NFI3 1004 aaPredicted RBP21.22■□□□□ 0.99
MCF2L-218ENST00000442625 HNRNPUL2Q1KMD3 747 aaKnown RBP21.18■□□□□ 0.98
MCF2L-218ENST00000442625 EEA1Q15075 1411 aa21.18■□□□□ 0.98
MCF2L-218ENST00000442625 MIER1Q8N108 512 aa21.16■□□□□ 0.98
MCF2L-218ENST00000442625 GOLGA3Q08378 1498 aa21.15■□□□□ 0.98
MCF2L-218ENST00000442625 RANGAP1P46060 587 aaPredicted RBP21.09■□□□□ 0.97
MCF2L-218ENST00000442625 BICRAQ9NZM4 1560 aa21.04■□□□□ 0.96
MCF2L-218ENST00000442625 SYNJ1O43426 1573 aa21.03■□□□□ 0.96
MCF2L-218ENST00000442625 CEP164Q9UPV0 1460 aa20.99■□□□□ 0.95
MCF2L-218ENST00000442625 CLIP1P30622 1438 aa20.99■□□□□ 0.95
MCF2L-218ENST00000442625 BCL11AQ9H165 835 aa20.96■□□□□ 0.95
MCF2L-218ENST00000442625 PEG3Q9GZU2 1588 aa20.91■□□□□ 0.94
MCF2L-218ENST00000442625 RAPGEF2Q9Y4G8 1499 aa20.91■□□□□ 0.94
MCF2L-218ENST00000442625 KIF21BO75037 1637 aa20.9■□□□□ 0.94
MCF2L-218ENST00000442625 ATAD2BQ9ULI0 1458 aa20.88■□□□□ 0.93
MCF2L-218ENST00000442625 VPS8Q8N3P4 1428 aa20.88■□□□□ 0.93
MCF2L-218ENST00000442625 BAZ1BQ9UIG0 1483 aaKnown RBP20.86■□□□□ 0.93
MCF2L-218ENST00000442625 AEBP2Q6ZN18 517 aaPredicted RBP20.76■□□□□ 0.91
MCF2L-218ENST00000442625 DAXXQ9UER7 740 aaPredicted RBP20.69■□□□□ 0.9
MCF2L-218ENST00000442625 KANK4Q5T7N3 995 aaPredicted RBP20.66■□□□□ 0.9
MCF2L-218ENST00000442625 TOP2BQ02880 1626 aa20.66■□□□□ 0.9
MCF2L-218ENST00000442625 SUPT16HQ9Y5B9 1047 aaKnown RBP20.6■□□□□ 0.89
MCF2L-218ENST00000442625 ARAP1Q96P48 1450 aa20.59■□□□□ 0.89
MCF2L-218ENST00000442625 DHX57Q6P158 1386 aaKnown RBP20.58■□□□□ 0.88
MCF2L-218ENST00000442625 PRXQ9BXM0 1461 aa20.57■□□□□ 0.88
MCF2L-218ENST00000442625 BIVM-ERCC5R4GMW8 1640 aa20.53■□□□□ 0.88
MCF2L-218ENST00000442625 KCNH8Q96L42 1107 aa20.52■□□□□ 0.88
MCF2L-218ENST00000442625 ITGAEP38570 1179 aa20.52■□□□□ 0.87
MCF2L-218ENST00000442625 ERICH3Q5RHP9 1530 aa20.51■□□□□ 0.87
MCF2L-218ENST00000442625 CUX1P39880 1505 aa20.49■□□□□ 0.87
MCF2L-218ENST00000442625 CLSPNQ9HAW4 1339 aa20.45■□□□□ 0.86
MCF2L-218ENST00000442625 KIF27Q86VH2 1401 aa20.44■□□□□ 0.86
MCF2L-218ENST00000442625 TSHZ2Q9NRE2 1034 aa20.41■□□□□ 0.86
MCF2L-218ENST00000442625 BCANQ96GW7 911 aa20.41■□□□□ 0.86
MCF2L-218ENST00000442625 RRBP1Q9P2E9 1410 aaKnown RBP20.4■□□□□ 0.86
MCF2L-218ENST00000442625 ARHGAP35Q9NRY4 1499 aa20.38■□□□□ 0.85
MCF2L-218ENST00000442625 CCNB3Q8WWL7 1395 aa20.37■□□□□ 0.85
MCF2L-218ENST00000442625 NCAPD3P42695 1498 aa20.36■□□□□ 0.85
MCF2L-218ENST00000442625 HMGXB3Q12766 1538 aa20.32■□□□□ 0.84
MCF2L-218ENST00000442625 CFTRP13569 1480 aa20.31■□□□□ 0.84
MCF2L-218ENST00000442625 CUX2O14529 1486 aa20.27■□□□□ 0.83
MCF2L-218ENST00000442625 RAB3GAP2Q9H2M9 1393 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms