RNA–Protein interactions for RNA: ENST00000536301.1

CHD4-205, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 107 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-205ENST00000536301 NISCHQ9Y2I1 1504 aa13.63□□□□□ -0.23
CHD4-205ENST00000536301 ABCC9O60706 1549 aa12.67□□□□□ -0.38
CHD4-205ENST00000536301 CCDC180Q9P1Z9 1646 aa12.32□□□□□ -0.44
CHD4-205ENST00000536301 DNAJC5BQ9UF47 199 aa12.21□□□□□ -0.45
CHD4-205ENST00000536301 RB1CC1Q8TDY2 1594 aa11.86□□□□□ -0.51
CHD4-205ENST00000536301 PABPN1Q86U42 306 aaKnown RBP eCLIP11.77□□□□□ -0.532e-6■■□□□ 13.9
CHD4-205ENST00000536301 UNC13AQ9UPW8 1703 aa11.71□□□□□ -0.54
CHD4-205ENST00000536301 NACADO15069 1562 aa11.7□□□□□ -0.54
CHD4-205ENST00000536301 DCAF8L2P0C7V8 631 aa11.63□□□□□ -0.55
CHD4-205ENST00000536301 BICRAQ9NZM4 1560 aa11.62□□□□□ -0.55
CHD4-205ENST00000536301 CC2D2AQ9P2K1 1620 aa11.42□□□□□ -0.58
CHD4-205ENST00000536301 MYO15BQ96JP2 1530 aa11.42□□□□□ -0.58
CHD4-205ENST00000536301 CECR2Q9BXF3 1484 aa11.41□□□□□ -0.58
CHD4-205ENST00000536301 DNAJC5Q9H3Z4 198 aa11.31□□□□□ -0.6
CHD4-205ENST00000536301 EIF4G1Q04637 1599 aaKnown RBP11.31□□□□□ -0.6
CHD4-205ENST00000536301 SCRIBQ14160 1630 aa11.28□□□□□ -0.6
CHD4-205ENST00000536301 SHROOM4Q9ULL8 1493 aa11.28□□□□□ -0.6
CHD4-205ENST00000536301 ZCCHC6Q5VYS8 1495 aaKnown RBP11.24□□□□□ -0.61
CHD4-205ENST00000536301 DCAF1Q9Y4B6 1507 aa11.19□□□□□ -0.62
CHD4-205ENST00000536301 CUX2O14529 1486 aa10.96□□□□□ -0.65
CHD4-205ENST00000536301 ERCC6Q03468 1493 aa10.9□□□□□ -0.66
CHD4-205ENST00000536301 NESP48681 1621 aa10.84□□□□□ -0.67
CHD4-205ENST00000536301 NCAPD3P42695 1498 aa10.82□□□□□ -0.68
CHD4-205ENST00000536301 ATAD2BQ9ULI0 1458 aa10.79□□□□□ -0.68
CHD4-205ENST00000536301 THOC2Q8NI27 1593 aaKnown RBP10.76□□□□□ -0.69
CHD4-205ENST00000536301 TRIM41Q8WV44 630 aa10.74□□□□□ -0.69
CHD4-205ENST00000536301 HMGXB3Q12766 1538 aa10.71□□□□□ -0.69
CHD4-205ENST00000536301 SMARCA4P51532 1647 aa10.7□□□□□ -0.7
CHD4-205ENST00000536301 SMARCA2P51531 1590 aa10.69□□□□□ -0.7
CHD4-205ENST00000536301 KIF21AQ7Z4S6 1674 aa10.67□□□□□ -0.7
CHD4-205ENST00000536301 BAZ1BQ9UIG0 1483 aaKnown RBP10.63□□□□□ -0.71
CHD4-205ENST00000536301 LAMC3Q9Y6N6 1575 aa10.61□□□□□ -0.71
CHD4-205ENST00000536301 PEG3Q9GZU2 1588 aa10.56□□□□□ -0.72
CHD4-205ENST00000536301 BAZ1AQ9NRL2 1556 aaPredicted RBP10.56□□□□□ -0.72
CHD4-205ENST00000536301 MROH2BQ7Z745 1585 aa10.55□□□□□ -0.72
CHD4-205ENST00000536301 PDS5BQ9NTI5 1447 aa10.54□□□□□ -0.72
CHD4-205ENST00000536301 MRC2Q9UBG0 1479 aa10.51□□□□□ -0.73
CHD4-205ENST00000536301 WDR62O43379 1518 aa10.5□□□□□ -0.73
CHD4-205ENST00000536301 CADPSQ9ULU8 1353 aa10.48□□□□□ -0.73
CHD4-205ENST00000536301 WIZO95785 1651 aa10.41□□□□□ -0.74
CHD4-205ENST00000536301 OSCARQ8IYS5 282 aa10.4□□□□□ -0.74
CHD4-205ENST00000536301 CEP164Q9UPV0 1460 aa10.4□□□□□ -0.74
CHD4-205ENST00000536301 RIMBP3CA6NJZ7 1639 aa10.39□□□□□ -0.75
CHD4-205ENST00000536301 RIMBP3BA6NNM3 1639 aa10.39□□□□□ -0.75
CHD4-205ENST00000536301 RIMBP3Q9UFD9 1639 aa10.39□□□□□ -0.75
CHD4-205ENST00000536301 FANCD2Q9BXW9 1451 aa10.38□□□□□ -0.75
CHD4-205ENST00000536301 URB2Q14146 1524 aaKnown RBP10.36□□□□□ -0.75
CHD4-205ENST00000536301 CFTRP13569 1480 aa10.31□□□□□ -0.76
CHD4-205ENST00000536301 ARHGEF11O15085 1522 aa10.3□□□□□ -0.76
CHD4-205ENST00000536301 ZNF608Q9ULD9 1512 aaPredicted RBP10.29□□□□□ -0.76
CHD4-205ENST00000536301 CYB5RLQ6IPT4 315 aa10.23□□□□□ -0.77
CHD4-205ENST00000536301 ARAP1Q96P48 1450 aa10.21□□□□□ -0.78
CHD4-205ENST00000536301 TOP2AP11388 1531 aaKnown RBP10.21□□□□□ -0.78
CHD4-205ENST00000536301 PRDM2Q13029 1718 aa10.2□□□□□ -0.78
CHD4-205ENST00000536301 CHD1O14646 1710 aa10.19□□□□□ -0.78
CHD4-205ENST00000536301 EIF4G3O43432 1585 aaKnown RBP10.19□□□□□ -0.78
CHD4-205ENST00000536301 IFT140Q96RY7 1462 aa10.19□□□□□ -0.78
CHD4-205ENST00000536301 RSF1Q96T23 1441 aaPredicted RBP10.19□□□□□ -0.78
CHD4-205ENST00000536301 TRHP20396 242 aaPredicted RBP10.19□□□□□ -0.78
CHD4-205ENST00000536301 TOPBP1Q92547 1522 aa10.17□□□□□ -0.78
CHD4-205ENST00000536301 AQRO60306 1485 aaKnown RBP eCLIP10.14□□□□□ -0.794e-8■■■■■ 34.1
CHD4-205ENST00000536301 TARBP1Q13395 1621 aaKnown RBP10.11□□□□□ -0.79
CHD4-205ENST00000536301 CCDC88BA6NC98 1476 aa10.11□□□□□ -0.79
CHD4-205ENST00000536301 FBLN2P98095 1184 aa10.09□□□□□ -0.79
CHD4-205ENST00000536301 DNMBPQ6XZF7 1577 aa10.09□□□□□ -0.79
CHD4-205ENST00000536301 AEBP2Q6ZN18 517 aaPredicted RBP10.06□□□□□ -0.8
CHD4-205ENST00000536301 POLA1P09884 1462 aaPredicted RBP10.05□□□□□ -0.8
CHD4-205ENST00000536301 RAD54L2Q9Y4B4 1467 aa10.05□□□□□ -0.8
CHD4-205ENST00000536301 CLASP1Q7Z460 1538 aa10.04□□□□□ -0.8
CHD4-205ENST00000536301 ABCC8Q09428 1581 aa10.03□□□□□ -0.8
CHD4-205ENST00000536301 TDRD9Q8NDG6 1382 aaKnown RBP10.02□□□□□ -0.8
CHD4-205ENST00000536301 SNAPC4Q5SXM2 1469 aa10.02□□□□□ -0.81
CHD4-205ENST00000536301 SOGA1O94964 1423 aa9.98□□□□□ -0.81
CHD4-205ENST00000536301 SYNJ1O43426 1573 aa9.97□□□□□ -0.81
CHD4-205ENST00000536301 FGD5Q6ZNL6 1462 aa9.95□□□□□ -0.82
CHD4-205ENST00000536301 ERCC6L2Q5T890 1561 aa9.94□□□□□ -0.82
CHD4-205ENST00000536301 GAPVD1Q14C86 1478 aa9.94□□□□□ -0.82
CHD4-205ENST00000536301 CHMP7Q8WUX9 453 aaPredicted RBP9.94□□□□□ -0.82
CHD4-205ENST00000536301 MAGI1Q96QZ7 1491 aaPredicted RBP9.92□□□□□ -0.82
CHD4-205ENST00000536301 CUX1P39880 1505 aa9.92□□□□□ -0.82
CHD4-205ENST00000536301 SYNJ2O15056 1496 aa9.91□□□□□ -0.82
CHD4-205ENST00000536301 GRIN2BQ13224 1484 aa9.91□□□□□ -0.82
CHD4-205ENST00000536301 WDR97A6NE52 1622 aa9.9□□□□□ -0.82
CHD4-205ENST00000536301 PBRM1Q86U86 1689 aa9.9□□□□□ -0.83
CHD4-205ENST00000536301 KIF13AQ9H1H9 1805 aa9.85□□□□□ -0.83
CHD4-205ENST00000536301 ABCA5Q8WWZ7 1642 aa9.83□□□□□ -0.84
CHD4-205ENST00000536301 CEP170Q5SW79 1584 aa9.82□□□□□ -0.84
CHD4-205ENST00000536301 ABCA10Q8WWZ4 1543 aa9.8□□□□□ -0.84
CHD4-205ENST00000536301 GRIN2AQ12879 1464 aa9.79□□□□□ -0.84
CHD4-205ENST00000536301 NUP160Q12769 1436 aa9.78□□□□□ -0.84
CHD4-205ENST00000536301 ADAMTS12P58397 1594 aa9.78□□□□□ -0.84
CHD4-205ENST00000536301 SHROOM2Q13796 1616 aa9.78□□□□□ -0.84
CHD4-205ENST00000536301 KDM4FA0A1W2PPD8 638 aa9.75□□□□□ -0.85
CHD4-205ENST00000536301 ILDR1Q86SU0 546 aaPredicted RBP9.74□□□□□ -0.85
CHD4-205ENST00000536301 FAM69CQ0P6D2 419 aa9.71□□□□□ -0.86
CHD4-205ENST00000536301 PRG4Q92954 1404 aaPredicted RBP9.71□□□□□ -0.86
CHD4-205ENST00000536301 FHAD1B1AJZ9 1412 aa9.7□□□□□ -0.86
CHD4-205ENST00000536301 ABCC10Q5T3U5 1492 aa9.7□□□□□ -0.86
CHD4-205ENST00000536301 DIP2BQ9P265 1576 aa9.7□□□□□ -0.86
CHD4-205ENST00000536301 TSPOAP1O95153 1857 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms