RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 NISCHQ9Y2I1 1504 aa20.69■□□□□ 0.9
CHD4-208ENST00000540960 ABCC9O60706 1549 aa20.11■□□□□ 0.81
CHD4-208ENST00000540960 DNAJC5BQ9UF47 199 aa19.92■□□□□ 0.78
CHD4-208ENST00000540960 CCDC180Q9P1Z9 1646 aa18.95■□□□□ 0.62
CHD4-208ENST00000540960 DNAJC5Q9H3Z4 198 aa18.92■□□□□ 0.62
CHD4-208ENST00000540960 PABPN1Q86U42 306 aaKnown RBP eCLIP18.61■□□□□ 0.57
CHD4-208ENST00000540960 RB1CC1Q8TDY2 1594 aa18.55■□□□□ 0.56
CHD4-208ENST00000540960 UNC13AQ9UPW8 1703 aa18.29■□□□□ 0.52
CHD4-208ENST00000540960 BICRAQ9NZM4 1560 aa18.17■□□□□ 0.5
CHD4-208ENST00000540960 CECR2Q9BXF3 1484 aa18.17■□□□□ 0.5
CHD4-208ENST00000540960 NACADO15069 1562 aa18.17■□□□□ 0.5
CHD4-208ENST00000540960 CC2D2AQ9P2K1 1620 aa18.09■□□□□ 0.49
CHD4-208ENST00000540960 DCAF8L2P0C7V8 631 aa18.02■□□□□ 0.48
CHD4-208ENST00000540960 EIF4G1Q04637 1599 aaKnown RBP17.75■□□□□ 0.43
CHD4-208ENST00000540960 TRIM41Q8WV44 630 aa17.7■□□□□ 0.42
CHD4-208ENST00000540960 CUX2O14529 1486 aa17.63■□□□□ 0.41
CHD4-208ENST00000540960 SHROOM4Q9ULL8 1493 aa17.58■□□□□ 0.41
CHD4-208ENST00000540960 MYO15BQ96JP2 1530 aa17.52■□□□□ 0.39
CHD4-208ENST00000540960 ERCC6Q03468 1493 aa17.34■□□□□ 0.37
CHD4-208ENST00000540960 SCRIBQ14160 1630 aa17.32■□□□□ 0.36
CHD4-208ENST00000540960 NESP48681 1621 aa17.02■□□□□ 0.31
CHD4-208ENST00000540960 THOC2Q8NI27 1593 aaKnown RBP16.97■□□□□ 0.31
CHD4-208ENST00000540960 DCAF1Q9Y4B6 1507 aa16.94■□□□□ 0.3
CHD4-208ENST00000540960 ZCCHC6Q5VYS8 1495 aaKnown RBP16.9■□□□□ 0.3
CHD4-208ENST00000540960 NCAPD3P42695 1498 aa16.82■□□□□ 0.28
CHD4-208ENST00000540960 AEBP2Q6ZN18 517 aaPredicted RBP16.82■□□□□ 0.28
CHD4-208ENST00000540960 SMARCA2P51531 1590 aa16.78■□□□□ 0.28
CHD4-208ENST00000540960 KIF21AQ7Z4S6 1674 aa16.72■□□□□ 0.27
CHD4-208ENST00000540960 OSCARQ8IYS5 282 aa16.72■□□□□ 0.27
CHD4-208ENST00000540960 BAZ1AQ9NRL2 1556 aaPredicted RBP16.72■□□□□ 0.27
CHD4-208ENST00000540960 RIMBP3CA6NJZ7 1639 aa16.66■□□□□ 0.26
CHD4-208ENST00000540960 RIMBP3BA6NNM3 1639 aa16.66■□□□□ 0.26
CHD4-208ENST00000540960 RIMBP3Q9UFD9 1639 aa16.66■□□□□ 0.26
CHD4-208ENST00000540960 ATAD2BQ9ULI0 1458 aa16.66■□□□□ 0.26
CHD4-208ENST00000540960 TRHP20396 242 aaPredicted RBP16.58■□□□□ 0.24
CHD4-208ENST00000540960 LAMC3Q9Y6N6 1575 aa16.57■□□□□ 0.24
CHD4-208ENST00000540960 HMGXB3Q12766 1538 aa16.55■□□□□ 0.24
CHD4-208ENST00000540960 PDS5BQ9NTI5 1447 aa16.5■□□□□ 0.23
CHD4-208ENST00000540960 ARHGEF11O15085 1522 aa16.47■□□□□ 0.23
CHD4-208ENST00000540960 WDR62O43379 1518 aa16.46■□□□□ 0.23
CHD4-208ENST00000540960 CYB5RLQ6IPT4 315 aa16.46■□□□□ 0.23
CHD4-208ENST00000540960 MRC2Q9UBG0 1479 aa16.46■□□□□ 0.23
CHD4-208ENST00000540960 ILDR1Q86SU0 546 aaPredicted RBP16.41■□□□□ 0.22
CHD4-208ENST00000540960 BAZ1BQ9UIG0 1483 aaKnown RBP16.4■□□□□ 0.22
CHD4-208ENST00000540960 SMARCA4P51532 1647 aa16.37■□□□□ 0.21
CHD4-208ENST00000540960 CADPSQ9ULU8 1353 aa16.26■□□□□ 0.19
CHD4-208ENST00000540960 ARAP1Q96P48 1450 aa16.25■□□□□ 0.19
CHD4-208ENST00000540960 CEP164Q9UPV0 1460 aa16.17■□□□□ 0.18
CHD4-208ENST00000540960 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
CHD4-208ENST00000540960 FANCD2Q9BXW9 1451 aa16.1■□□□□ 0.17
CHD4-208ENST00000540960 ZNF608Q9ULD9 1512 aaPredicted RBP16.09■□□□□ 0.17
CHD4-208ENST00000540960 URB2Q14146 1524 aaKnown RBP16.08■□□□□ 0.16
CHD4-208ENST00000540960 CHD1O14646 1710 aa16■□□□□ 0.15
CHD4-208ENST00000540960 MROH2BQ7Z745 1585 aa16■□□□□ 0.15
CHD4-208ENST00000540960 RSF1Q96T23 1441 aaPredicted RBP15.95■□□□□ 0.14
CHD4-208ENST00000540960 FBLN2P98095 1184 aa15.88■□□□□ 0.13
CHD4-208ENST00000540960 IFT140Q96RY7 1462 aa15.88■□□□□ 0.13
CHD4-208ENST00000540960 EIF4G3O43432 1585 aaKnown RBP15.87■□□□□ 0.13
CHD4-208ENST00000540960 CFTRP13569 1480 aa15.86■□□□□ 0.13
CHD4-208ENST00000540960 KDM4FA0A1W2PPD8 638 aa15.83■□□□□ 0.12
CHD4-208ENST00000540960 AQRO60306 1485 aaKnown RBP eCLIP15.8■□□□□ 0.124e-8■■■■■ 34.1
CHD4-208ENST00000540960 WIZO95785 1651 aa15.77■□□□□ 0.12
CHD4-208ENST00000540960 CLASP1Q7Z460 1538 aa15.74■□□□□ 0.11
CHD4-208ENST00000540960 TOPBP1Q92547 1522 aa15.69■□□□□ 0.1
CHD4-208ENST00000540960 GAPVD1Q14C86 1478 aa15.65■□□□□ 0.1
CHD4-208ENST00000540960 KIF13AQ9H1H9 1805 aa15.65■□□□□ 0.1
CHD4-208ENST00000540960 TARBP1Q13395 1621 aaKnown RBP15.65■□□□□ 0.1
CHD4-208ENST00000540960 PRDM2Q13029 1718 aa15.61■□□□□ 0.09
CHD4-208ENST00000540960 SYNJ1O43426 1573 aa15.58■□□□□ 0.08
CHD4-208ENST00000540960 SNAPC4Q5SXM2 1469 aa15.55■□□□□ 0.08
CHD4-208ENST00000540960 CHMP7Q8WUX9 453 aaPredicted RBP15.54■□□□□ 0.08
CHD4-208ENST00000540960 ERCC6L2Q5T890 1561 aa15.53■□□□□ 0.08
CHD4-208ENST00000540960 TDRD9Q8NDG6 1382 aaKnown RBP15.53■□□□□ 0.08
CHD4-208ENST00000540960 FBXO41Q8TF61 875 aa15.52■□□□□ 0.08
CHD4-208ENST00000540960 HECW2Q9P2P5 1572 aa15.52■□□□□ 0.07
CHD4-208ENST00000540960 DNMBPQ6XZF7 1577 aa15.5■□□□□ 0.07
CHD4-208ENST00000540960 RAD54L2Q9Y4B4 1467 aa15.49■□□□□ 0.07
CHD4-208ENST00000540960 ABCC8Q09428 1581 aa15.47■□□□□ 0.07
CHD4-208ENST00000540960 POLA1P09884 1462 aaPredicted RBP15.46■□□□□ 0.06
CHD4-208ENST00000540960 LMTK3Q96Q04 1460 aa15.44■□□□□ 0.06
CHD4-208ENST00000540960 FAM69CQ0P6D2 419 aa15.42■□□□□ 0.06
CHD4-208ENST00000540960 KDM6BO15054 1643 aa15.41■□□□□ 0.06
CHD4-208ENST00000540960 TOP2AP11388 1531 aaKnown RBP15.39■□□□□ 0.05
CHD4-208ENST00000540960 ILDR2Q71H61 639 aa15.39■□□□□ 0.05
CHD4-208ENST00000540960 SYNJ2O15056 1496 aa15.39■□□□□ 0.05
CHD4-208ENST00000540960 MAGI1Q96QZ7 1491 aaPredicted RBP15.39■□□□□ 0.05
CHD4-208ENST00000540960 ADGRL1O94910 1474 aa15.38■□□□□ 0.05
CHD4-208ENST00000540960 SOGA1O94964 1423 aa15.37■□□□□ 0.05
CHD4-208ENST00000540960 SOCS7O14512 581 aa15.35■□□□□ 0.05
CHD4-208ENST00000540960 ABCC10Q5T3U5 1492 aa15.33■□□□□ 0.05
CHD4-208ENST00000540960 TSPOAP1O95153 1857 aa15.33■□□□□ 0.04
CHD4-208ENST00000540960 GRIN2BQ13224 1484 aa15.31■□□□□ 0.04
CHD4-208ENST00000540960 CEP170Q5SW79 1584 aa15.31■□□□□ 0.04
CHD4-208ENST00000540960 CCDC88BA6NC98 1476 aa15.3■□□□□ 0.04
CHD4-208ENST00000540960 DIP2BQ9P265 1576 aa15.28■□□□□ 0.04
CHD4-208ENST00000540960 WDR97A6NE52 1622 aa15.25■□□□□ 0.03
CHD4-208ENST00000540960 PBRM1Q86U86 1689 aa15.23■□□□□ 0.03
CHD4-208ENST00000540960 FGD5Q6ZNL6 1462 aa15.22■□□□□ 0.03
CHD4-208ENST00000540960 SHROOM2Q13796 1616 aa15.19■□□□□ 0.02
CHD4-208ENST00000540960 MAPKBP1O60336 1514 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms