Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PSMB3-211ENST00000619426 773 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.072e-7■■■■□ 24.5
DDX55Q8NHQ9 PSMB3-208ENST00000613870 662 ntTSL 39.85□□□□□ -0.832e-7■■■■□ 24.5
DDX55Q8NHQ9 PSMB3-212ENST00000620309 552 ntTSL 28.39□□□□□ -1.072e-7■■■■□ 24.5
DDX55Q8NHQ9 PSMB3-209ENST00000614132 426 ntTSL 26.3□□□□□ -1.42e-7■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC23.14■■□□□ 1.296e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-208ENST00000548646 608 ntTSL 320.21■□□□□ 0.836e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-204ENST00000547182 724 ntTSL 320.21■□□□□ 0.836e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-212ENST00000551598 636 ntTSL 520.21■□□□□ 0.836e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-213ENST00000551625 2450 ntTSL 1 (best)17.19■□□□□ 0.346e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-215ENST00000552596 669 ntTSL 217.02■□□□□ 0.326e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.186e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-207ENST00000548602 1666 ntTSL 1 (best)15.78■□□□□ 0.126e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.116e-14■■■■□ 24.5
DDX55Q8NHQ9 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC15.71■□□□□ 0.116e-14■■■■□ 24.5
DDX55Q8NHQ9 UNC45A-204ENST00000471780 1730 ntTSL 521.63■■□□□ 1.056e-12■■■■□ 24.5
DDX55Q8NHQ9 HNRNPM-216ENST00000602219 1809 nt16.78■□□□□ 0.289e-12■■■■□ 24.5
DDX55Q8NHQ9 POLE3-204ENST00000479871 2396 ntTSL 215.16■□□□□ 0.021e-6■■■■□ 24.5
DDX55Q8NHQ9 POLE3-202ENST00000374171 2191 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.241e-6■■■■□ 24.5
DDX55Q8NHQ9 POLE3-201ENST00000374169 2109 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.311e-6■■■■□ 24.5
DDX55Q8NHQ9 SMARCA2-227ENST00000634760 5847 ntTSL 523.14■■□□□ 1.34e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC17■□□□□ 0.314e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.81■□□□□ 0.124e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.074e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.064e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC14.22□□□□□ -0.134e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-266ENST00000639760 2531 ntTSL 211.45□□□□□ -0.584e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-265ENST00000638139 2675 ntTSL 510.33□□□□□ -0.764e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-202ENST00000324954 1781 ntTSL 5 BASIC10.29□□□□□ -0.764e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-246ENST00000635739 4272 ntTSL 59.01□□□□□ -0.974e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-250ENST00000636367 1889 ntTSL 58.4□□□□□ -1.064e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-243ENST00000635590 1843 ntTSL 38.3□□□□□ -1.084e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-247ENST00000636157 3211 ntTSL 58.06□□□□□ -1.124e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.9□□□□□ -1.464e-6■■■■□ 24.4
DDX55Q8NHQ9 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.84□□□□□ -1.474e-6■■■■□ 24.4
DDX55Q8NHQ9 PCGF2-201ENST00000610747 459 ntTSL 216.09■□□□□ 0.172e-9■■■■□ 24.4
DDX55Q8NHQ9 EEF1D-221ENST00000528382 308 ntTSL 521.44■■□□□ 1.027e-14■■■■□ 24.3
DDX55Q8NHQ9 EEF1D-227ENST00000529576 424 ntTSL 219.86■□□□□ 0.777e-14■■■■□ 24.3
DDX55Q8NHQ9 EEF1D-229ENST00000530109 533 ntTSL 219.15■□□□□ 0.667e-14■■■■□ 24.3
DDX55Q8NHQ9 EEF1D-219ENST00000527741 3718 ntTSL 211.93□□□□□ -0.57e-14■■■■□ 24.3
DDX55Q8NHQ9 MARCH6-202ENST00000449913 3062 ntTSL 2 BASIC10.28□□□□□ -0.769e-7■■■■□ 24.3
DDX55Q8NHQ9 MARCH6-204ENST00000503788 2874 ntTSL 2 BASIC9.13□□□□□ -0.959e-7■■■■□ 24.3
DDX55Q8NHQ9 MARCH6-210ENST00000511802 4734 ntTSL 28.23□□□□□ -1.099e-7■■■■□ 24.3
DDX55Q8NHQ9 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.172e-18■■■■□ 24.3
DDX55Q8NHQ9 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.38■□□□□ 0.537e-24■■■■□ 24.1
DDX55Q8NHQ9 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.467e-24■■■■□ 24.1
DDX55Q8NHQ9 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC23.99■■□□□ 1.431e-6■■■■□ 24.1
DDX55Q8NHQ9 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.091e-6■■■■□ 24.1
DDX55Q8NHQ9 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC17.32■□□□□ 0.361e-6■■■■□ 24.1
DDX55Q8NHQ9 LAMTOR4-212ENST00000494136 427 ntTSL 210.27□□□□□ -0.771e-7■■■■□ 24.1
DDX55Q8NHQ9 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.483e-6■■■■□ 24.1
DDX55Q8NHQ9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC24■■□□□ 1.432e-9■■■■□ 24.1
DDX55Q8NHQ9 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.312e-9■■■■□ 24.1
DDX55Q8NHQ9 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.182e-9■■■■□ 24.1
DDX55Q8NHQ9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.182e-9■■■■□ 24.1
DDX55Q8NHQ9 DCAF15-204ENST00000588523 989 ntTSL 520.49■□□□□ 0.873e-6■■■■□ 24.1
DDX55Q8NHQ9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.822e-9■■■■□ 24.1
DDX55Q8NHQ9 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.12■□□□□ 0.812e-9■■■■□ 24.1
DDX55Q8NHQ9 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.812e-9■■■■□ 24.1
DDX55Q8NHQ9 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.76■□□□□ 0.752e-9■■■■□ 24.1
DDX55Q8NHQ9 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.552e-9■■■■□ 24.1
DDX55Q8NHQ9 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC18.39■□□□□ 0.532e-9■■■■□ 24.1
DDX55Q8NHQ9 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.485e-10■■■■□ 24.1
DDX55Q8NHQ9 OTUB1-204ENST00000447683 2315 ntTSL 217.57■□□□□ 0.41e-6■■■■□ 24.1
DDX55Q8NHQ9 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.325e-10■■■■□ 24.1
DDX55Q8NHQ9 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.235e-10■■■■□ 24.1
DDX55Q8NHQ9 OTUB1-207ENST00000536443 553 ntTSL 311.94□□□□□ -0.51e-6■■■■□ 24.1
DDX55Q8NHQ9 SSFA2-203ENST00000409136 3610 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.735e-10■■■■□ 24.1
DDX55Q8NHQ9 SSFA2-206ENST00000440623 5420 ntTSL 27.91□□□□□ -1.145e-10■■■■□ 24.1
DDX55Q8NHQ9 SSFA2-204ENST00000416081 5067 ntTSL 1 (best)7.84□□□□□ -1.155e-10■■■■□ 24.1
DDX55Q8NHQ9 SSFA2-213ENST00000491720 6473 ntTSL 26.9□□□□□ -1.35e-10■■■■□ 24.1
DDX55Q8NHQ9 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC19.48■□□□□ 0.712e-6■■■■□ 24.1
DDX55Q8NHQ9 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC16■□□□□ 0.152e-6■■■■□ 24.1
DDX55Q8NHQ9 D2HGDH-214ENST00000473126 1612 ntTSL 1 (best)28.77■■■□□ 2.24e-10■■■■□ 24.1
DDX55Q8NHQ9 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.39■■□□□ 1.654e-10■■■■□ 24.1
DDX55Q8NHQ9 D2HGDH-212ENST00000468064 2298 ntTSL 1 (best)24.77■■□□□ 1.564e-10■■■■□ 24.1
DDX55Q8NHQ9 D2HGDH-202ENST00000400769 2277 ntTSL 224.77■■□□□ 1.564e-10■■■■□ 24.1
DDX55Q8NHQ9 D2HGDH-215ENST00000486953 2232 ntTSL 1 (best)24.24■■□□□ 1.474e-10■■■■□ 24.1
DDX55Q8NHQ9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC23.26■■□□□ 1.314e-10■■■■□ 24.1
DDX55Q8NHQ9 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.084e-10■■■■□ 24.1
DDX55Q8NHQ9 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.994e-10■■■■□ 24.1
DDX55Q8NHQ9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.23■□□□□ 0.514e-12■■■■□ 24.1
DDX55Q8NHQ9 D2HGDH-206ENST00000436747 4549 ntTSL 1 (best)18.06■□□□□ 0.484e-10■■■■□ 24.1
DDX55Q8NHQ9 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.314e-12■■■■□ 24.1
DDX55Q8NHQ9 TRIM27-205ENST00000481474 7006 ntTSL 1 (best)12.48□□□□□ -0.414e-12■■■■□ 24.1
DDX55Q8NHQ9 TRIM27-203ENST00000414543 1813 ntTSL 311.67□□□□□ -0.544e-12■■■■□ 24.1
DDX55Q8NHQ9 TYMS-205ENST00000581920 886 ntTSL 59.99□□□□□ -0.814e-10■■■■□ 24.1
DDX55Q8NHQ9 SMS-202ENST00000404933 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.34e-7■■■■□ 24.1
DDX55Q8NHQ9 LSM5-208ENST00000450169 2258 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.941e-6■■■■□ 24
DDX55Q8NHQ9 ZNHIT1-202ENST00000461205 571 ntTSL 311.18□□□□□ -0.629e-9■■■■□ 24
DDX55Q8NHQ9 ZNHIT1-204ENST00000492315 3958 ntTSL 29.82□□□□□ -0.849e-9■■■■□ 24
DDX55Q8NHQ9 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.352e-7■■■■□ 23.9
DDX55Q8NHQ9 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 14e-9■■■■□ 23.8
DDX55Q8NHQ9 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.984e-9■■■■□ 23.8
DDX55Q8NHQ9 DPM3-202ENST00000368399 517 ntBASIC17.91■□□□□ 0.464e-9■■■■□ 23.8
DDX55Q8NHQ9 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.293e-7■■■■□ 23.8
DDX55Q8NHQ9 RCN3-202ENST00000593483 595 ntTSL 519.4■□□□□ 0.73e-7■■■■□ 23.8
DDX55Q8NHQ9 RCN3-205ENST00000598833 607 ntTSL 319.03■□□□□ 0.643e-7■■■■□ 23.8
DDX55Q8NHQ9 RECQL4-202ENST00000524998 686 ntTSL 324.57■■□□□ 1.523e-6■■■■□ 23.7
DDX55Q8NHQ9 RECQL4-207ENST00000534538 725 ntTSL 322.16■■□□□ 1.143e-6■■■■□ 23.7
DDX55Q8NHQ9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.38■□□□□ 0.373e-6■■■■□ 23.7
Retrieved 100 of 15,504 protein–RNA pairs in 184.8 ms