RNA–Protein interactions for RNA: ENST00000620309.4

PSMB3-212, Transcript of proteasome subunit beta 3, humanhuman

TSL 2

Gene PSMB3, Length 552 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMB3-212ENST00000620309 NISCHQ9Y2I1 1504 aa16.92■□□□□ 0.3
PSMB3-212ENST00000620309 ABCC9O60706 1549 aa15.46■□□□□ 0.07
PSMB3-212ENST00000620309 CCDC180Q9P1Z9 1646 aa15.14■□□□□ 0.01
PSMB3-212ENST00000620309 DNAJC5BQ9UF47 199 aa14.99□□□□□ -0.01
PSMB3-212ENST00000620309 RB1CC1Q8TDY2 1594 aa14.56□□□□□ -0.08
PSMB3-212ENST00000620309 NACADO15069 1562 aa14.36□□□□□ -0.11
PSMB3-212ENST00000620309 UNC13AQ9UPW8 1703 aa14.35□□□□□ -0.11
PSMB3-212ENST00000620309 PABPN1Q86U42 306 aaKnown RBP eCLIP14.25□□□□□ -0.13
PSMB3-212ENST00000620309 BICRAQ9NZM4 1560 aa14.24□□□□□ -0.13
PSMB3-212ENST00000620309 ZCCHC6Q5VYS8 1495 aaKnown RBP14.23□□□□□ -0.13
PSMB3-212ENST00000620309 DNAJC5Q9H3Z4 198 aa14.1□□□□□ -0.15
PSMB3-212ENST00000620309 DCAF1Q9Y4B6 1507 aa14.08□□□□□ -0.16
PSMB3-212ENST00000620309 MYO15BQ96JP2 1530 aa14.07□□□□□ -0.16
PSMB3-212ENST00000620309 CC2D2AQ9P2K1 1620 aa14.01□□□□□ -0.17
PSMB3-212ENST00000620309 CECR2Q9BXF3 1484 aa14□□□□□ -0.17
PSMB3-212ENST00000620309 SHROOM4Q9ULL8 1493 aa13.99□□□□□ -0.17
PSMB3-212ENST00000620309 DCAF8L2P0C7V8 631 aa13.97□□□□□ -0.17
PSMB3-212ENST00000620309 EIF4G1Q04637 1599 aaKnown RBP13.88□□□□□ -0.19
PSMB3-212ENST00000620309 SCRIBQ14160 1630 aa13.7□□□□□ -0.22
PSMB3-212ENST00000620309 CUX2O14529 1486 aa13.59□□□□□ -0.23
PSMB3-212ENST00000620309 ERCC6Q03468 1493 aa13.33□□□□□ -0.28
PSMB3-212ENST00000620309 NCAPD3P42695 1498 aa13.27□□□□□ -0.29
PSMB3-212ENST00000620309 THOC2Q8NI27 1593 aaKnown RBP13.23□□□□□ -0.29
PSMB3-212ENST00000620309 NESP48681 1621 aa13.18□□□□□ -0.3
PSMB3-212ENST00000620309 HMGXB3Q12766 1538 aa13.14□□□□□ -0.31
PSMB3-212ENST00000620309 SMARCA4P51532 1647 aa13.14□□□□□ -0.31
PSMB3-212ENST00000620309 ATAD2BQ9ULI0 1458 aa13.14□□□□□ -0.31
PSMB3-212ENST00000620309 TRIM41Q8WV44 630 aa13.13□□□□□ -0.31
PSMB3-212ENST00000620309 BAZ1AQ9NRL2 1556 aaPredicted RBP13.12□□□□□ -0.31
PSMB3-212ENST00000620309 SMARCA2P51531 1590 aa13.07□□□□□ -0.32
PSMB3-212ENST00000620309 KIF21AQ7Z4S6 1674 aa13.05□□□□□ -0.32
PSMB3-212ENST00000620309 MROH2BQ7Z745 1585 aa13.04□□□□□ -0.32
PSMB3-212ENST00000620309 LAMC3Q9Y6N6 1575 aa13.04□□□□□ -0.32
PSMB3-212ENST00000620309 PEG3Q9GZU2 1588 aa13.03□□□□□ -0.32
PSMB3-212ENST00000620309 WIZO95785 1651 aa12.97□□□□□ -0.33
PSMB3-212ENST00000620309 RSF1Q96T23 1441 aaPredicted RBP12.95□□□□□ -0.34
PSMB3-212ENST00000620309 BAZ1BQ9UIG0 1483 aaKnown RBP12.93□□□□□ -0.34
PSMB3-212ENST00000620309 PDS5BQ9NTI5 1447 aa12.91□□□□□ -0.34
PSMB3-212ENST00000620309 WDR62O43379 1518 aa12.91□□□□□ -0.34
PSMB3-212ENST00000620309 MRC2Q9UBG0 1479 aa12.87□□□□□ -0.35
PSMB3-212ENST00000620309 TOP2AP11388 1531 aaKnown RBP12.86□□□□□ -0.35
PSMB3-212ENST00000620309 RIMBP3CA6NJZ7 1639 aa12.79□□□□□ -0.36
PSMB3-212ENST00000620309 RIMBP3BA6NNM3 1639 aa12.79□□□□□ -0.36
PSMB3-212ENST00000620309 RIMBP3Q9UFD9 1639 aa12.79□□□□□ -0.36
PSMB3-212ENST00000620309 CADPSQ9ULU8 1353 aa12.79□□□□□ -0.36
PSMB3-212ENST00000620309 OSCARQ8IYS5 282 aa12.78□□□□□ -0.36
PSMB3-212ENST00000620309 PRDM2Q13029 1718 aa12.69□□□□□ -0.38
PSMB3-212ENST00000620309 CEP164Q9UPV0 1460 aa12.69□□□□□ -0.38
PSMB3-212ENST00000620309 ARHGEF11O15085 1522 aa12.67□□□□□ -0.38
PSMB3-212ENST00000620309 SUPT5HO00267 1087 aaKnown RBP12.64□□□□□ -0.39
PSMB3-212ENST00000620309 FANCD2Q9BXW9 1451 aa12.64□□□□□ -0.39
PSMB3-212ENST00000620309 URB2Q14146 1524 aaKnown RBP12.62□□□□□ -0.39
PSMB3-212ENST00000620309 CCDC88BA6NC98 1476 aa12.59□□□□□ -0.39
PSMB3-212ENST00000620309 CFTRP13569 1480 aa12.59□□□□□ -0.39
PSMB3-212ENST00000620309 ARAP1Q96P48 1450 aa12.53□□□□□ -0.4
PSMB3-212ENST00000620309 ZNF608Q9ULD9 1512 aaPredicted RBP12.52□□□□□ -0.41
PSMB3-212ENST00000620309 IFT140Q96RY7 1462 aa12.47□□□□□ -0.41
PSMB3-212ENST00000620309 CYB5RLQ6IPT4 315 aa12.47□□□□□ -0.41
PSMB3-212ENST00000620309 CHD1O14646 1710 aa12.46□□□□□ -0.41
PSMB3-212ENST00000620309 EIF4G3O43432 1585 aaKnown RBP12.45□□□□□ -0.42
PSMB3-212ENST00000620309 TRHP20396 242 aaPredicted RBP12.43□□□□□ -0.42
PSMB3-212ENST00000620309 AEBP2Q6ZN18 517 aaPredicted RBP12.41□□□□□ -0.42
PSMB3-212ENST00000620309 TOPBP1Q92547 1522 aa12.37□□□□□ -0.43
PSMB3-212ENST00000620309 TARBP1Q13395 1621 aaKnown RBP12.37□□□□□ -0.43
PSMB3-212ENST00000620309 ABCC8Q09428 1581 aa12.34□□□□□ -0.43
PSMB3-212ENST00000620309 CLASP1Q7Z460 1538 aa12.33□□□□□ -0.44
PSMB3-212ENST00000620309 DNMBPQ6XZF7 1577 aa12.31□□□□□ -0.44
PSMB3-212ENST00000620309 BIVM-ERCC5R4GMW8 1640 aa12.31□□□□□ -0.44
PSMB3-212ENST00000620309 AQRO60306 1485 aaKnown RBP eCLIP12.3□□□□□ -0.446e-12■■■■■ 50.2
PSMB3-212ENST00000620309 SYNJ1O43426 1573 aa12.27□□□□□ -0.44
PSMB3-212ENST00000620309 TOP2BQ02880 1626 aa12.26□□□□□ -0.45
PSMB3-212ENST00000620309 CUX1P39880 1505 aa12.24□□□□□ -0.45
PSMB3-212ENST00000620309 POLA1P09884 1462 aaPredicted RBP12.21□□□□□ -0.45
PSMB3-212ENST00000620309 WDR97A6NE52 1622 aa12.21□□□□□ -0.46
PSMB3-212ENST00000620309 WRNQ14191 1432 aaPredicted RBP eCLIP12.2□□□□□ -0.46
PSMB3-212ENST00000620309 SNAPC4Q5SXM2 1469 aa12.17□□□□□ -0.46
PSMB3-212ENST00000620309 FBLN2P98095 1184 aa12.17□□□□□ -0.46
PSMB3-212ENST00000620309 GAPVD1Q14C86 1478 aa12.15□□□□□ -0.46
PSMB3-212ENST00000620309 MAGI1Q96QZ7 1491 aaPredicted RBP12.14□□□□□ -0.47
PSMB3-212ENST00000620309 RAD54L2Q9Y4B4 1467 aa12.14□□□□□ -0.47
PSMB3-212ENST00000620309 KIF13AQ9H1H9 1805 aa12.13□□□□□ -0.47
PSMB3-212ENST00000620309 FGD5Q6ZNL6 1462 aa12.13□□□□□ -0.47
PSMB3-212ENST00000620309 TDRD9Q8NDG6 1382 aaKnown RBP12.12□□□□□ -0.47
PSMB3-212ENST00000620309 SYNJ2O15056 1496 aa12.11□□□□□ -0.47
PSMB3-212ENST00000620309 PBRM1Q86U86 1689 aa12.1□□□□□ -0.47
PSMB3-212ENST00000620309 SOGA1O94964 1423 aa12.08□□□□□ -0.48
PSMB3-212ENST00000620309 ERCC6L2Q5T890 1561 aa12.07□□□□□ -0.48
PSMB3-212ENST00000620309 ABCA5Q8WWZ7 1642 aa12.07□□□□□ -0.48
PSMB3-212ENST00000620309 GRIN2BQ13224 1484 aa12.07□□□□□ -0.48
PSMB3-212ENST00000620309 ILDR1Q86SU0 546 aaPredicted RBP12.06□□□□□ -0.48
PSMB3-212ENST00000620309 CHMP7Q8WUX9 453 aaPredicted RBP12.05□□□□□ -0.48
PSMB3-212ENST00000620309 ABCA10Q8WWZ4 1543 aa12.03□□□□□ -0.48
PSMB3-212ENST00000620309 CHIC1Q5VXU3 224 aa12.02□□□□□ -0.49
PSMB3-212ENST00000620309 SHROOM2Q13796 1616 aa12□□□□□ -0.49
PSMB3-212ENST00000620309 CEP170Q5SW79 1584 aa11.99□□□□□ -0.49
PSMB3-212ENST00000620309 KDM4FA0A1W2PPD8 638 aa11.97□□□□□ -0.49
PSMB3-212ENST00000620309 NUP160Q12769 1436 aa11.95□□□□□ -0.5
PSMB3-212ENST00000620309 GRIN2AQ12879 1464 aa11.94□□□□□ -0.5
PSMB3-212ENST00000620309 CUL7Q14999 1698 aa11.94□□□□□ -0.5
PSMB3-212ENST00000620309 ERICH3Q5RHP9 1530 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms