RNA–Protein interactions for RNA: ENST00000635590.1

SMARCA2-243, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, humanhuman

TSL 3

Gene SMARCA2, Length 1,843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA2-243ENST00000635590 CHIC1Q5VXU3 224 aa21.78■■□□□ 1.08
SMARCA2-243ENST00000635590 AEBP2Q6ZN18 517 aaPredicted RBP21.01■□□□□ 0.95
SMARCA2-243ENST00000635590 PHF23Q9BUL5 403 aaPredicted RBP19.39■□□□□ 0.69
SMARCA2-243ENST00000635590 PLPPR3Q6T4P5 718 aa18.28■□□□□ 0.52
SMARCA2-243ENST00000635590 EHMT2Q96KQ7 1210 aa18.12■□□□□ 0.49
SMARCA2-243ENST00000635590 KCNA4P22459 653 aa17.58■□□□□ 0.4
SMARCA2-243ENST00000635590 SENP3Q9H4L4 574 aaPredicted RBP17.47■□□□□ 0.39
SMARCA2-243ENST00000635590 SLC24A1O60721 1099 aa17.29■□□□□ 0.36
SMARCA2-243ENST00000635590 CSRNP3Q8WYN3 585 aa17.26■□□□□ 0.35
SMARCA2-243ENST00000635590 ADRA2BP18089 450 aa17.19■□□□□ 0.34
SMARCA2-243ENST00000635590 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
SMARCA2-243ENST00000635590 PPP6R1Q9UPN7 881 aa16.67■□□□□ 0.26
SMARCA2-243ENST00000635590 RTN4Q9NQC3 1192 aaKnown RBP16.63■□□□□ 0.25
SMARCA2-243ENST00000635590 AMER1Q5JTC6 1135 aaPredicted RBP16.51■□□□□ 0.23
SMARCA2-243ENST00000635590 PPP4R3CPQ6ZMV5 832 aa16.31■□□□□ 0.2
SMARCA2-243ENST00000635590 ZBTB22O15209 634 aa16.24■□□□□ 0.19
SMARCA2-243ENST00000635590 NCBP3Q53F19 620 aaKnown RBP16.21■□□□□ 0.19
SMARCA2-243ENST00000635590 FOXD1Q16676 465 aa16.13■□□□□ 0.17
SMARCA2-243ENST00000635590 NPM3O75607 178 aaKnown RBP16.08■□□□□ 0.17
SMARCA2-243ENST00000635590 FOXD4L1Q9NU39 408 aa15.71■□□□□ 0.1
SMARCA2-243ENST00000635590 PIAS4Q8N2W9 510 aaPredicted RBP15.53■□□□□ 0.08
SMARCA2-243ENST00000635590 CNKSR2Q8WXI2 1034 aa15.51■□□□□ 0.07
SMARCA2-243ENST00000635590 FKBP8Q14318 412 aa15.49■□□□□ 0.07
SMARCA2-243ENST00000635590 DNAJC5BQ9UF47 199 aa15.32■□□□□ 0.04
SMARCA2-243ENST00000635590 PRKCSHP14314 528 aaPredicted RBP15.23■□□□□ 0.03
SMARCA2-243ENST00000635590 PLCB2Q00722 1185 aa15.19■□□□□ 0.02
SMARCA2-243ENST00000635590 SCAF1Q9H7N4 1312 aaKnown RBP15.13■□□□□ 0.01
SMARCA2-243ENST00000635590 BCANQ96GW7 911 aa15.08■□□□□ 0.01
SMARCA2-243ENST00000635590 TAOK2Q9UL54 1235 aa15.03■□□□□ -0
SMARCA2-243ENST00000635590 ATXN8OSP0DMR3 200 aa14.98□□□□□ -0.01
SMARCA2-243ENST00000635590 HAP1P54257 671 aaPredicted RBP14.98□□□□□ -0.01
SMARCA2-243ENST00000635590 SLC4A2P04920 1241 aa14.87□□□□□ -0.03
SMARCA2-243ENST00000635590 RNF216Q9NWF9 866 aaPredicted RBP14.87□□□□□ -0.03
SMARCA2-243ENST00000635590 TPRNQ4KMQ1 711 aa14.78□□□□□ -0.04
SMARCA2-243ENST00000635590 MAPK8IP2Q13387 824 aaPredicted RBP14.77□□□□□ -0.05
SMARCA2-243ENST00000635590 MYCNP04198 464 aaPredicted RBP14.76□□□□□ -0.05
SMARCA2-243ENST00000635590 VSIG10Q8N0Z9 540 aa14.76□□□□□ -0.05
SMARCA2-243ENST00000635590 DAXXQ9UER7 740 aaPredicted RBP14.65□□□□□ -0.06
SMARCA2-243ENST00000635590 DCAF8L2P0C7V8 631 aa14.59□□□□□ -0.07
SMARCA2-243ENST00000635590 TIMELESSQ9UNS1 1208 aa14.56□□□□□ -0.08
SMARCA2-243ENST00000635590 KDM2AQ9Y2K7 1162 aa14.51□□□□□ -0.09
SMARCA2-243ENST00000635590 HOXD11P31277 338 aaPredicted RBP14.45□□□□□ -0.1
SMARCA2-243ENST00000635590 FBXO3Q9UK99 471 aa14.45□□□□□ -0.1
SMARCA2-243ENST00000635590 ARXQ96QS3 562 aa14.45□□□□□ -0.1
SMARCA2-243ENST00000635590 TULP1O00294 542 aaPredicted RBP14.44□□□□□ -0.1
SMARCA2-243ENST00000635590 FBLN2P98095 1184 aa14.41□□□□□ -0.1
SMARCA2-243ENST00000635590 ATF5Q9Y2D1 282 aaPredicted RBP14.39□□□□□ -0.11
SMARCA2-243ENST00000635590 PKD2Q13563 968 aa14.32□□□□□ -0.12
SMARCA2-243ENST00000635590 VASPP50552 380 aaPredicted RBP14.29□□□□□ -0.12
SMARCA2-243ENST00000635590 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.26□□□□□ -0.13
SMARCA2-243ENST00000635590 GTF3C3Q9Y5Q9 886 aa14.26□□□□□ -0.13
SMARCA2-243ENST00000635590 IFNLR1Q8IU57 520 aaPredicted RBP14.25□□□□□ -0.13
SMARCA2-243ENST00000635590 BBXQ8WY36 941 aaPredicted RBP14.23□□□□□ -0.13
SMARCA2-243ENST00000635590 MSH5O43196 834 aa14.22□□□□□ -0.13
SMARCA2-243ENST00000635590 PAXIP1Q6ZW49 1069 aaPredicted RBP14.22□□□□□ -0.13
SMARCA2-243ENST00000635590 DMRT2Q9Y5R5 561 aa14.2□□□□□ -0.14
SMARCA2-243ENST00000635590 CFAP44Q96MT7 982 aa14.18□□□□□ -0.14
SMARCA2-243ENST00000635590 NPM1P06748 294 aaKnown RBP eCLIP14.13□□□□□ -0.15
SMARCA2-243ENST00000635590 ERICH6Q7L0X2 663 aa14.12□□□□□ -0.15
SMARCA2-243ENST00000635590 SPDYE4A6NLX3 237 aa14.11□□□□□ -0.15
SMARCA2-243ENST00000635590 PROM2Q8N271 834 aa14.09□□□□□ -0.15
SMARCA2-243ENST00000635590 HOMEZQ8IX15 550 aa14.08□□□□□ -0.16
SMARCA2-243ENST00000635590 TSHZ2Q9NRE2 1034 aa14.07□□□□□ -0.16
SMARCA2-243ENST00000635590 NBR1Q14596 966 aa14□□□□□ -0.17
SMARCA2-243ENST00000635590 TMEM132AQ24JP5 1023 aa13.97□□□□□ -0.17
SMARCA2-243ENST00000635590 SAMD1Q6SPF0 538 aaPredicted RBP13.97□□□□□ -0.17
SMARCA2-243ENST00000635590 SPRYD3Q8NCJ5 442 aa13.97□□□□□ -0.17
SMARCA2-243ENST00000635590 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.93□□□□□ -0.18
SMARCA2-243ENST00000635590 HNRNPUL2Q1KMD3 747 aaKnown RBP13.93□□□□□ -0.18
SMARCA2-243ENST00000635590 ECM2O94769 699 aaPredicted RBP13.92□□□□□ -0.18
SMARCA2-243ENST00000635590 ZNF219Q9P2Y4 722 aaPredicted RBP13.89□□□□□ -0.19
SMARCA2-243ENST00000635590 DNAJC5Q9H3Z4 198 aa13.87□□□□□ -0.19
SMARCA2-243ENST00000635590 C14orf37Q86TY3 774 aa13.84□□□□□ -0.19
SMARCA2-243ENST00000635590 MKRN4PQ13434 485 aaPredicted RBP13.81□□□□□ -0.2
SMARCA2-243ENST00000635590 RGL2O15211 777 aa13.8□□□□□ -0.2
SMARCA2-243ENST00000635590 SPOCK2Q92563 424 aa13.78□□□□□ -0.2
SMARCA2-243ENST00000635590 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.76□□□□□ -0.21
SMARCA2-243ENST00000635590 U3KPZ7 1027 aaPredicted RBP13.76□□□□□ -0.21
SMARCA2-243ENST00000635590 KLHL34Q8N239 644 aa13.7□□□□□ -0.22
SMARCA2-243ENST00000635590 CHGAP10645 457 aaKnown RBP13.65□□□□□ -0.22
SMARCA2-243ENST00000635590 PODXL2Q9NZ53 605 aa13.55□□□□□ -0.24
SMARCA2-243ENST00000635590 DCAF8L1A6NGE4 600 aa13.53□□□□□ -0.24
SMARCA2-243ENST00000635590 RANGAP1P46060 587 aaPredicted RBP13.53□□□□□ -0.24
SMARCA2-243ENST00000635590 NISCHQ9Y2I1 1504 aa13.51□□□□□ -0.25
SMARCA2-243ENST00000635590 SUPT5HO00267 1087 aaKnown RBP13.49□□□□□ -0.25
SMARCA2-243ENST00000635590 HS6ST3Q8IZP7 471 aa13.43□□□□□ -0.26
SMARCA2-243ENST00000635590 APLP2Q06481 763 aa13.41□□□□□ -0.26
SMARCA2-243ENST00000635590 PLCD3Q8N3E9 789 aa13.35□□□□□ -0.27
SMARCA2-243ENST00000635590 CIZ1Q9ULV3 898 aaPredicted RBP13.35□□□□□ -0.27
SMARCA2-243ENST00000635590 BRPF1P55201 1214 aaPredicted RBP13.31□□□□□ -0.28
SMARCA2-243ENST00000635590 STAG3Q9UJ98 1225 aa13.31□□□□□ -0.28
SMARCA2-243ENST00000635590 NKX1-1Q15270 411 aaPredicted RBP13.29□□□□□ -0.28
SMARCA2-243ENST00000635590 GTPBP6O43824 516 aaPredicted RBP13.27□□□□□ -0.29
SMARCA2-243ENST00000635590 UBTFP17480 764 aaKnown RBP13.25□□□□□ -0.29
SMARCA2-243ENST00000635590 MIER1Q8N108 512 aa13.22□□□□□ -0.29
SMARCA2-243ENST00000635590 LMOD2Q6P5Q4 547 aa13.21□□□□□ -0.29
SMARCA2-243ENST00000635590 POLA2Q14181 598 aa13.2□□□□□ -0.3
SMARCA2-243ENST00000635590 TRIM26Q12899 539 aaPredicted RBP13.2□□□□□ -0.3
SMARCA2-243ENST00000635590 TRIM41Q8WV44 630 aa13.2□□□□□ -0.3
SMARCA2-243ENST00000635590 RNF25Q96BH1 459 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms