RNA–Protein interactions for RNA: ENST00000404933.6

SMS-202, Transcript of spermine synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMS, Length 1,837 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMS-202ENST00000404933 NISCHQ9Y2I1 1504 aa26.26■■□□□ 1.79
SMS-202ENST00000404933 CCDC180Q9P1Z9 1646 aa22.83■■□□□ 1.24
SMS-202ENST00000404933 ZCCHC6Q5VYS8 1495 aaKnown RBP22.1■■□□□ 1.13
SMS-202ENST00000404933 DCAF1Q9Y4B6 1507 aa21.72■■□□□ 1.07
SMS-202ENST00000404933 DCAF8L2P0C7V8 631 aa21.62■■□□□ 1.05
SMS-202ENST00000404933 SHROOM4Q9ULL8 1493 aa21.56■■□□□ 1.04
SMS-202ENST00000404933 MYO15BQ96JP2 1530 aa21.38■■□□□ 1.01
SMS-202ENST00000404933 ABCC9O60706 1549 aa21.35■■□□□ 1.01
SMS-202ENST00000404933 NACADO15069 1562 aa21.19■□□□□ 0.98
SMS-202ENST00000404933 SCRIBQ14160 1630 aa21.01■□□□□ 0.95
SMS-202ENST00000404933 RB1CC1Q8TDY2 1594 aa20.97■□□□□ 0.95
SMS-202ENST00000404933 SUPT5HO00267 1087 aaKnown RBP20.86■□□□□ 0.93
SMS-202ENST00000404933 UNC13AQ9UPW8 1703 aa20.57■□□□□ 0.88
SMS-202ENST00000404933 RSF1Q96T23 1441 aaPredicted RBP20.44■□□□□ 0.86
SMS-202ENST00000404933 CECR2Q9BXF3 1484 aa20.36■□□□□ 0.85
SMS-202ENST00000404933 BICRAQ9NZM4 1560 aa20.31■□□□□ 0.84
SMS-202ENST00000404933 MROH2BQ7Z745 1585 aa20.29■□□□□ 0.84
SMS-202ENST00000404933 BAZ1AQ9NRL2 1556 aaPredicted RBP20.27■□□□□ 0.84
SMS-202ENST00000404933 PABPN1Q86U42 306 aaKnown RBP eCLIP20.18■□□□□ 0.82
SMS-202ENST00000404933 SMARCA4P51532 1647 aa20.15■□□□□ 0.82
SMS-202ENST00000404933 WIZO95785 1651 aa20.15■□□□□ 0.82
SMS-202ENST00000404933 CHIC1Q5VXU3 224 aa20.08■□□□□ 0.8
SMS-202ENST00000404933 TOP2AP11388 1531 aaKnown RBP19.95■□□□□ 0.78
SMS-202ENST00000404933 PEG3Q9GZU2 1588 aa19.89■□□□□ 0.77
SMS-202ENST00000404933 SMARCA2P51531 1590 aa19.77■□□□□ 0.75
SMS-202ENST00000404933 ATAD2BQ9ULI0 1458 aa19.75■□□□□ 0.75
SMS-202ENST00000404933 CCDC88BA6NC98 1476 aa19.73■□□□□ 0.75
SMS-202ENST00000404933 EIF4G1Q04637 1599 aaKnown RBP19.69■□□□□ 0.74
SMS-202ENST00000404933 BAZ1BQ9UIG0 1483 aaKnown RBP19.66■□□□□ 0.74
SMS-202ENST00000404933 TRIM41Q8WV44 630 aa19.61■□□□□ 0.73
SMS-202ENST00000404933 HMGXB3Q12766 1538 aa19.55■□□□□ 0.72
SMS-202ENST00000404933 NCAPD3P42695 1498 aa19.54■□□□□ 0.72
SMS-202ENST00000404933 ABCC8Q09428 1581 aa19.39■□□□□ 0.69
SMS-202ENST00000404933 CC2D2AQ9P2K1 1620 aa19.34■□□□□ 0.69
SMS-202ENST00000404933 LOC105371045A0A1W2PR82 267 aa19.31■□□□□ 0.68
SMS-202ENST00000404933 FAM9AQ8IZU1 332 aaPredicted RBP19.25■□□□□ 0.67
SMS-202ENST00000404933 WRNQ14191 1432 aaPredicted RBP eCLIP19.25■□□□□ 0.67
SMS-202ENST00000404933 CFTRP13569 1480 aa19.17■□□□□ 0.66
SMS-202ENST00000404933 SYNJ1O43426 1573 aa19.16■□□□□ 0.66
SMS-202ENST00000404933 PRDM2Q13029 1718 aa19.14■□□□□ 0.65
SMS-202ENST00000404933 EEA1Q15075 1411 aa19.11■□□□□ 0.65
SMS-202ENST00000404933 TOP2BQ02880 1626 aa19.08■□□□□ 0.64
SMS-202ENST00000404933 BIVM-ERCC5R4GMW8 1640 aa19.06■□□□□ 0.64
SMS-202ENST00000404933 SOGA1O94964 1423 aa19.06■□□□□ 0.64
SMS-202ENST00000404933 CADPSQ9ULU8 1353 aa19.06■□□□□ 0.64
SMS-202ENST00000404933 RUSC2Q8N2Y8 1516 aa18.97■□□□□ 0.63
SMS-202ENST00000404933 CSRNP3Q8WYN3 585 aa18.97■□□□□ 0.63
SMS-202ENST00000404933 CUX1P39880 1505 aa18.96■□□□□ 0.63
SMS-202ENST00000404933 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
SMS-202ENST00000404933 LAMC3Q9Y6N6 1575 aa18.87■□□□□ 0.61
SMS-202ENST00000404933 FANCD2Q9BXW9 1451 aa18.85■□□□□ 0.61
SMS-202ENST00000404933 KIF21BO75037 1637 aa18.85■□□□□ 0.61
SMS-202ENST00000404933 GOLGA3Q08378 1498 aa18.84■□□□□ 0.61
SMS-202ENST00000404933 CEP164Q9UPV0 1460 aa18.83■□□□□ 0.6
SMS-202ENST00000404933 TNIKQ9UKE5 1360 aa18.82■□□□□ 0.6
SMS-202ENST00000404933 NESP48681 1621 aa18.81■□□□□ 0.6
SMS-202ENST00000404933 KIF27Q86VH2 1401 aa18.75■□□□□ 0.59
SMS-202ENST00000404933 UBTFP17480 764 aaKnown RBP18.75■□□□□ 0.59
SMS-202ENST00000404933 DNAJC5BQ9UF47 199 aa18.74■□□□□ 0.59
SMS-202ENST00000404933 DNMBPQ6XZF7 1577 aa18.74■□□□□ 0.59
SMS-202ENST00000404933 CEP162Q5TB80 1403 aa18.73■□□□□ 0.59
SMS-202ENST00000404933 FGD5Q6ZNL6 1462 aa18.72■□□□□ 0.59
SMS-202ENST00000404933 PDS5BQ9NTI5 1447 aa18.71■□□□□ 0.59
SMS-202ENST00000404933 ERICH3Q5RHP9 1530 aa18.68■□□□□ 0.58
SMS-202ENST00000404933 TOPBP1Q92547 1522 aa18.67■□□□□ 0.58
SMS-202ENST00000404933 RAPGEF2Q9Y4G8 1499 aa18.67■□□□□ 0.58
SMS-202ENST00000404933 PCGF6Q9BYE7 350 aa18.67■□□□□ 0.58
SMS-202ENST00000404933 PRXQ9BXM0 1461 aa18.66■□□□□ 0.58
SMS-202ENST00000404933 CUX2O14529 1486 aa18.64■□□□□ 0.57
SMS-202ENST00000404933 TRIM26Q12899 539 aaPredicted RBP18.63■□□□□ 0.57
SMS-202ENST00000404933 HRCP23327 699 aa18.62■□□□□ 0.57
SMS-202ENST00000404933 KIF21AQ7Z4S6 1674 aa18.62■□□□□ 0.57
SMS-202ENST00000404933 URB2Q14146 1524 aaKnown RBP18.6■□□□□ 0.57
SMS-202ENST00000404933 POLA1P09884 1462 aaPredicted RBP18.59■□□□□ 0.57
SMS-202ENST00000404933 ABCA10Q8WWZ4 1543 aa18.56■□□□□ 0.56
SMS-202ENST00000404933 CLIP1P30622 1438 aa18.55■□□□□ 0.56
SMS-202ENST00000404933 IGF1RP08069 1367 aa18.54■□□□□ 0.56
SMS-202ENST00000404933 RAD54L2Q9Y4B4 1467 aa18.53■□□□□ 0.56
SMS-202ENST00000404933 WDR97A6NE52 1622 aa18.49■□□□□ 0.55
SMS-202ENST00000404933 CARMIL1Q5VZK9 1371 aa18.47■□□□□ 0.55
SMS-202ENST00000404933 MRC2Q9UBG0 1479 aa18.45■□□□□ 0.54
SMS-202ENST00000404933 CUL7Q14999 1698 aa18.42■□□□□ 0.54
SMS-202ENST00000404933 VPS8Q8N3P4 1428 aa18.42■□□□□ 0.54
SMS-202ENST00000404933 ABCA5Q8WWZ7 1642 aa18.4■□□□□ 0.54
SMS-202ENST00000404933 TARBP1Q13395 1621 aaKnown RBP18.39■□□□□ 0.53
SMS-202ENST00000404933 PPARGC1BQ86YN6 1023 aaKnown RBP18.38■□□□□ 0.53
SMS-202ENST00000404933 RANGAP1P46060 587 aaPredicted RBP18.36■□□□□ 0.53
SMS-202ENST00000404933 GAPVD1Q14C86 1478 aa18.35■□□□□ 0.53
SMS-202ENST00000404933 WDR62O43379 1518 aa18.34■□□□□ 0.53
SMS-202ENST00000404933 TDRD9Q8NDG6 1382 aaKnown RBP18.33■□□□□ 0.53
SMS-202ENST00000404933 ARAP1Q96P48 1450 aa18.32■□□□□ 0.52
SMS-202ENST00000404933 ERCC6Q03468 1493 aa18.31■□□□□ 0.52
SMS-202ENST00000404933 ARHGAP35Q9NRY4 1499 aa18.28■□□□□ 0.52
SMS-202ENST00000404933 APLP2Q06481 763 aa18.26■□□□□ 0.51
SMS-202ENST00000404933 IFT140Q96RY7 1462 aa18.26■□□□□ 0.51
SMS-202ENST00000404933 PBRM1Q86U86 1689 aa18.26■□□□□ 0.51
SMS-202ENST00000404933 CTTNBP2Q8WZ74 1663 aa18.26■□□□□ 0.51
SMS-202ENST00000404933 THOC2Q8NI27 1593 aaKnown RBP18.23■□□□□ 0.51
SMS-202ENST00000404933 TTBK1Q5TCY1 1321 aaPredicted RBP18.2■□□□□ 0.5
SMS-202ENST00000404933 AQRO60306 1485 aaKnown RBP eCLIP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms