RNA–Protein interactions for RNA: ENST00000316052.5

EXOSC4-201, Transcript of exosome component 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXOSC4, Length 887 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4-201ENST00000316052 NISCHQ9Y2I1 1504 aa43.78■■■■■ 4.6
EXOSC4-201ENST00000316052 ABCC9O60706 1549 aa39.29■■■■□ 3.88
EXOSC4-201ENST00000316052 CCDC180Q9P1Z9 1646 aa39.21■■■■□ 3.87
EXOSC4-201ENST00000316052 RB1CC1Q8TDY2 1594 aa37.34■■■■□ 3.57
EXOSC4-201ENST00000316052 NACADO15069 1562 aa37.09■■■■□ 3.53
EXOSC4-201ENST00000316052 DCAF8L2P0C7V8 631 aa37.02■■■■□ 3.52
EXOSC4-201ENST00000316052 DNAJC5BQ9UF47 199 aa36.95■■■■□ 3.51
EXOSC4-201ENST00000316052 PABPN1Q86U42 306 aaKnown RBP eCLIP36.64■■■■□ 3.46
EXOSC4-201ENST00000316052 MYO15BQ96JP2 1530 aa36.58■■■■□ 3.45
EXOSC4-201ENST00000316052 UNC13AQ9UPW8 1703 aa36.55■■■■□ 3.44
EXOSC4-201ENST00000316052 BICRAQ9NZM4 1560 aa36.32■■■■□ 3.4
EXOSC4-201ENST00000316052 ZCCHC6Q5VYS8 1495 aaKnown RBP36.27■■■■□ 3.4
EXOSC4-201ENST00000316052 DCAF1Q9Y4B6 1507 aa36.13■■■■□ 3.37
EXOSC4-201ENST00000316052 SCRIBQ14160 1630 aa35.79■■■■□ 3.32
EXOSC4-201ENST00000316052 SHROOM4Q9ULL8 1493 aa35.72■■■■□ 3.31
EXOSC4-201ENST00000316052 CC2D2AQ9P2K1 1620 aa35.47■■■■□ 3.27
EXOSC4-201ENST00000316052 EIF4G1Q04637 1599 aaKnown RBP35.38■■■■□ 3.25
EXOSC4-201ENST00000316052 CECR2Q9BXF3 1484 aa35.37■■■■□ 3.25
EXOSC4-201ENST00000316052 NCAPD3P42695 1498 aa34.28■■■■□ 3.08
EXOSC4-201ENST00000316052 ATAD2BQ9ULI0 1458 aa34.2■■■■□ 3.06
EXOSC4-201ENST00000316052 SMARCA4P51532 1647 aa34.13■■■■□ 3.05
EXOSC4-201ENST00000316052 SMARCA2P51531 1590 aa34.04■■■■□ 3.04
EXOSC4-201ENST00000316052 HMGXB3Q12766 1538 aa33.98■■■■□ 3.03
EXOSC4-201ENST00000316052 BAZ1AQ9NRL2 1556 aaPredicted RBP33.94■■■■□ 3.02
EXOSC4-201ENST00000316052 ERCC6Q03468 1493 aa33.87■■■■□ 3.01
EXOSC4-201ENST00000316052 DNAJC5Q9H3Z4 198 aa33.85■■■■□ 3.01
EXOSC4-201ENST00000316052 BAZ1BQ9UIG0 1483 aaKnown RBP33.82■■■■□ 3.01
EXOSC4-201ENST00000316052 CUX2O14529 1486 aa33.79■■■■□ 3
EXOSC4-201ENST00000316052 PEG3Q9GZU2 1588 aa33.79■■■■□ 3
EXOSC4-201ENST00000316052 NESP48681 1621 aa33.78■■■■□ 3
EXOSC4-201ENST00000316052 MROH2BQ7Z745 1585 aa33.77■■■■□ 3
EXOSC4-201ENST00000316052 LAMC3Q9Y6N6 1575 aa33.46■■■□□ 2.95
EXOSC4-201ENST00000316052 THOC2Q8NI27 1593 aaKnown RBP33.36■■■□□ 2.93
EXOSC4-201ENST00000316052 WIZO95785 1651 aa33.36■■■□□ 2.93
EXOSC4-201ENST00000316052 KIF21AQ7Z4S6 1674 aa33.29■■■□□ 2.92
EXOSC4-201ENST00000316052 PDS5BQ9NTI5 1447 aa33.29■■■□□ 2.92
EXOSC4-201ENST00000316052 CADPSQ9ULU8 1353 aa33.25■■■□□ 2.91
EXOSC4-201ENST00000316052 RSF1Q96T23 1441 aaPredicted RBP33.09■■■□□ 2.89
EXOSC4-201ENST00000316052 MRC2Q9UBG0 1479 aa32.99■■■□□ 2.87
EXOSC4-201ENST00000316052 WDR62O43379 1518 aa32.92■■■□□ 2.86
EXOSC4-201ENST00000316052 TOP2AP11388 1531 aaKnown RBP32.88■■■□□ 2.85
EXOSC4-201ENST00000316052 CFTRP13569 1480 aa32.86■■■□□ 2.85
EXOSC4-201ENST00000316052 CEP164Q9UPV0 1460 aa32.86■■■□□ 2.85
EXOSC4-201ENST00000316052 FANCD2Q9BXW9 1451 aa32.86■■■□□ 2.85
EXOSC4-201ENST00000316052 URB2Q14146 1524 aaKnown RBP32.61■■■□□ 2.81
EXOSC4-201ENST00000316052 CCDC88BA6NC98 1476 aa32.58■■■□□ 2.81
EXOSC4-201ENST00000316052 PRDM2Q13029 1718 aa32.48■■■□□ 2.79
EXOSC4-201ENST00000316052 TRIM41Q8WV44 630 aa32.37■■■□□ 2.77
EXOSC4-201ENST00000316052 OSCARQ8IYS5 282 aa32.33■■■□□ 2.77
EXOSC4-201ENST00000316052 TOPBP1Q92547 1522 aa32.25■■■□□ 2.75
EXOSC4-201ENST00000316052 ZNF608Q9ULD9 1512 aaPredicted RBP32.22■■■□□ 2.75
EXOSC4-201ENST00000316052 IFT140Q96RY7 1462 aa32.22■■■□□ 2.75
EXOSC4-201ENST00000316052 ABCC8Q09428 1581 aa32.13■■■□□ 2.73
EXOSC4-201ENST00000316052 DNMBPQ6XZF7 1577 aa32.1■■■□□ 2.73
EXOSC4-201ENST00000316052 EIF4G3O43432 1585 aaKnown RBP31.98■■■□□ 2.71
EXOSC4-201ENST00000316052 TARBP1Q13395 1621 aaKnown RBP31.96■■■□□ 2.71
EXOSC4-201ENST00000316052 AQRO60306 1485 aaKnown RBP eCLIP31.94■■■□□ 2.75e-8■■■■■ 28.9
EXOSC4-201ENST00000316052 POLA1P09884 1462 aaPredicted RBP31.91■■■□□ 2.7
EXOSC4-201ENST00000316052 RIMBP3CA6NJZ7 1639 aa31.86■■■□□ 2.69
EXOSC4-201ENST00000316052 RIMBP3BA6NNM3 1639 aa31.86■■■□□ 2.69
EXOSC4-201ENST00000316052 RIMBP3Q9UFD9 1639 aa31.86■■■□□ 2.69
EXOSC4-201ENST00000316052 RAD54L2Q9Y4B4 1467 aa31.84■■■□□ 2.69
EXOSC4-201ENST00000316052 SOGA1O94964 1423 aa31.79■■■□□ 2.68
EXOSC4-201ENST00000316052 ARHGEF11O15085 1522 aa31.76■■■□□ 2.68
EXOSC4-201ENST00000316052 TDRD9Q8NDG6 1382 aaKnown RBP31.76■■■□□ 2.67
EXOSC4-201ENST00000316052 CHD1O14646 1710 aa31.75■■■□□ 2.67
EXOSC4-201ENST00000316052 FBLN2P98095 1184 aa31.72■■■□□ 2.67
EXOSC4-201ENST00000316052 FGD5Q6ZNL6 1462 aa31.72■■■□□ 2.67
EXOSC4-201ENST00000316052 CUX1P39880 1505 aa31.71■■■□□ 2.67
EXOSC4-201ENST00000316052 SUPT5HO00267 1087 aaKnown RBP31.67■■■□□ 2.66
EXOSC4-201ENST00000316052 CYB5RLQ6IPT4 315 aa31.6■■■□□ 2.65
EXOSC4-201ENST00000316052 SNAPC4Q5SXM2 1469 aa31.57■■■□□ 2.64
EXOSC4-201ENST00000316052 WDR97A6NE52 1622 aa31.55■■■□□ 2.64
EXOSC4-201ENST00000316052 CHMP7Q8WUX9 453 aaPredicted RBP31.48■■■□□ 2.63
EXOSC4-201ENST00000316052 GRIN2BQ13224 1484 aa31.47■■■□□ 2.63
EXOSC4-201ENST00000316052 ARAP1Q96P48 1450 aa31.47■■■□□ 2.63
EXOSC4-201ENST00000316052 MAGI1Q96QZ7 1491 aaPredicted RBP31.46■■■□□ 2.63
EXOSC4-201ENST00000316052 GAPVD1Q14C86 1478 aa31.39■■■□□ 2.62
EXOSC4-201ENST00000316052 CLASP1Q7Z460 1538 aa31.39■■■□□ 2.61
EXOSC4-201ENST00000316052 SYNJ2O15056 1496 aa31.37■■■□□ 2.61
EXOSC4-201ENST00000316052 ABCA10Q8WWZ4 1543 aa31.35■■■□□ 2.61
EXOSC4-201ENST00000316052 SYNJ1O43426 1573 aa31.34■■■□□ 2.61
EXOSC4-201ENST00000316052 PBRM1Q86U86 1689 aa31.33■■■□□ 2.61
EXOSC4-201ENST00000316052 ABCA5Q8WWZ7 1642 aa31.28■■■□□ 2.6
EXOSC4-201ENST00000316052 WRNQ14191 1432 aaPredicted RBP eCLIP31.23■■■□□ 2.59
EXOSC4-201ENST00000316052 TRHP20396 242 aaPredicted RBP31.2■■■□□ 2.59
EXOSC4-201ENST00000316052 TOP2BQ02880 1626 aa31.17■■■□□ 2.58
EXOSC4-201ENST00000316052 BIVM-ERCC5R4GMW8 1640 aa31.16■■■□□ 2.58
EXOSC4-201ENST00000316052 GRIN2AQ12879 1464 aa31.08■■■□□ 2.57
EXOSC4-201ENST00000316052 ADAMTS12P58397 1594 aa31.05■■■□□ 2.56
EXOSC4-201ENST00000316052 NUP160Q12769 1436 aa30.98■■■□□ 2.55
EXOSC4-201ENST00000316052 FHAD1B1AJZ9 1412 aa30.98■■■□□ 2.55
EXOSC4-201ENST00000316052 CEP170Q5SW79 1584 aa30.97■■■□□ 2.55
EXOSC4-201ENST00000316052 ERCC6L2Q5T890 1561 aa30.96■■■□□ 2.55
EXOSC4-201ENST00000316052 ERICH3Q5RHP9 1530 aa30.94■■■□□ 2.54
EXOSC4-201ENST00000316052 SHROOM2Q13796 1616 aa30.82■■■□□ 2.52
EXOSC4-201ENST00000316052 JPH4Q96JJ6 628 aa30.72■■■□□ 2.51
EXOSC4-201ENST00000316052 PRG4Q92954 1404 aaPredicted RBP30.7■■■□□ 2.5
EXOSC4-201ENST00000316052 IGF1RP08069 1367 aa30.64■■■□□ 2.5
EXOSC4-201ENST00000316052 RUSC2Q8N2Y8 1516 aa30.59■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms