Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.38□□□□□ -0.27
CX3CL1P78423 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CX3CL1P78423 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CX3CL1P78423 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CX3CL1P78423 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.38□□□□□ -0.27
CX3CL1P78423 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CX3CL1P78423 AL590627.1-203ENST00000421194 1026 ntBASIC13.38□□□□□ -0.27
CX3CL1P78423 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.38□□□□□ -0.27
CX3CL1P78423 AC091167.2-201ENST00000579581 588 ntBASIC13.38□□□□□ -0.27
CX3CL1P78423 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.38□□□□□ -0.27
CX3CL1P78423 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
CX3CL1P78423 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 Z83851.2-201ENST00000609564 659 ntBASIC13.38□□□□□ -0.27
CX3CL1P78423 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.38□□□□□ -0.27
CX3CL1P78423 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CX3CL1P78423 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CX3CL1P78423 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 AC006277.1-201ENST00000624348 1610 ntBASIC13.38□□□□□ -0.27
CX3CL1P78423 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CX3CL1P78423 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CX3CL1P78423 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.38□□□□□ -0.27
CX3CL1P78423 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CX3CL1P78423 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.37□□□□□ -0.27
CX3CL1P78423 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.37□□□□□ -0.27
CX3CL1P78423 AC105917.1-201ENST00000506637 2539 ntBASIC13.37□□□□□ -0.27
CX3CL1P78423 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC13.37□□□□□ -0.27
CX3CL1P78423 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CX3CL1P78423 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.37□□□□□ -0.27
CX3CL1P78423 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
CX3CL1P78423 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.37□□□□□ -0.27
CX3CL1P78423 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
CX3CL1P78423 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.37□□□□□ -0.27
CX3CL1P78423 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
CX3CL1P78423 CRYGEP-201ENST00000412192 528 ntBASIC13.37□□□□□ -0.27
CX3CL1P78423 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.37□□□□□ -0.27
CX3CL1P78423 VN2R19P-201ENST00000442399 1052 ntBASIC13.37□□□□□ -0.27
CX3CL1P78423 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC13.37□□□□□ -0.27
CX3CL1P78423 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.37□□□□□ -0.27
CX3CL1P78423 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.37□□□□□ -0.27
CX3CL1P78423 AC005412.3-201ENST00000580309 715 ntBASIC13.37□□□□□ -0.27
CX3CL1P78423 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13.37□□□□□ -0.27
CX3CL1P78423 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.37□□□□□ -0.27
CX3CL1P78423 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 AC092850.2-201ENST00000623821 2697 ntBASIC13.37□□□□□ -0.27
CX3CL1P78423 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.37□□□□□ -0.27
CX3CL1P78423 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC13.37□□□□□ -0.27
CX3CL1P78423 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CX3CL1P78423 AC104109.2-201ENST00000602919 1418 ntBASIC13.37□□□□□ -0.27
CX3CL1P78423 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms