RNA–Protein interactions for RNA: ENST00000372146.4

GTF3C4-201, Transcript of general transcription factor IIIC subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C4, Length 9,043 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4-201ENST00000372146 PELP1Q8IZL8 1130 aaKnown RBP25.51■■□□□ 1.67
GTF3C4-201ENST00000372146 ERICH6Q7L0X2 663 aa24.65■■□□□ 1.54
GTF3C4-201ENST00000372146 MYT1Q01538 1121 aa24.64■■□□□ 1.53
GTF3C4-201ENST00000372146 DCAF8L2P0C7V8 631 aa24.42■■□□□ 1.5
GTF3C4-201ENST00000372146 CCER1Q8TC90 406 aaPredicted RBP24.25■■□□□ 1.47
GTF3C4-201ENST00000372146 CENPBP07199 599 aaPredicted RBP23.92■■□□□ 1.42
GTF3C4-201ENST00000372146 EHMT2Q96KQ7 1210 aa23.75■■□□□ 1.39
GTF3C4-201ENST00000372146 SUPT5HO00267 1087 aaKnown RBP23.72■■□□□ 1.39
GTF3C4-201ENST00000372146 TTBK1Q5TCY1 1321 aaPredicted RBP23.5■■□□□ 1.35
GTF3C4-201ENST00000372146 NEFLP07196 543 aa23.43■■□□□ 1.34
GTF3C4-201ENST00000372146 YTHDC1Q96MU7 727 aaKnown RBP23.39■■□□□ 1.34
GTF3C4-201ENST00000372146 PCGF6Q9BYE7 350 aa23.35■■□□□ 1.33
GTF3C4-201ENST00000372146 APLP2Q06481 763 aa23.32■■□□□ 1.32
GTF3C4-201ENST00000372146 DAXXQ9UER7 740 aaPredicted RBP23.2■■□□□ 1.3
GTF3C4-201ENST00000372146 ZEB1P37275 1124 aaPredicted RBP23.11■■□□□ 1.29
GTF3C4-201ENST00000372146 NISCHQ9Y2I1 1504 aa23.05■■□□□ 1.28
GTF3C4-201ENST00000372146 SHROOM4Q9ULL8 1493 aa22.9■■□□□ 1.26
GTF3C4-201ENST00000372146 RTL5Q5HYW3 569 aaPredicted RBP22.8■■□□□ 1.24
GTF3C4-201ENST00000372146 ZNF316A6NFI3 1004 aaPredicted RBP22.64■■□□□ 1.22
GTF3C4-201ENST00000372146 FAM9AQ8IZU1 332 aaPredicted RBP22.57■■□□□ 1.2
GTF3C4-201ENST00000372146 RANGAP1P46060 587 aaPredicted RBP22.38■■□□□ 1.17
GTF3C4-201ENST00000372146 ATP1B4Q9UN42 357 aaPredicted RBP22.23■■□□□ 1.15
GTF3C4-201ENST00000372146 EIF5BO60841 1220 aaKnown RBP22.21■■□□□ 1.15
GTF3C4-201ENST00000372146 CLSPNQ9HAW4 1339 aa22.21■■□□□ 1.15
GTF3C4-201ENST00000372146 GLIPR1L2Q4G1C9 344 aa22.15■■□□□ 1.14
GTF3C4-201ENST00000372146 HRCP23327 699 aa22.12■■□□□ 1.13
GTF3C4-201ENST00000372146 POLR3GLQ9BT43 218 aa22.05■■□□□ 1.12
GTF3C4-201ENST00000372146 CNGB1Q14028 1251 aaPredicted RBP21.94■■□□□ 1.1
GTF3C4-201ENST00000372146 PPARGC1BQ86YN6 1023 aaKnown RBP21.91■■□□□ 1.1
GTF3C4-201ENST00000372146 TRIM26Q12899 539 aaPredicted RBP21.86■■□□□ 1.09
GTF3C4-201ENST00000372146 UBTFP17480 764 aaKnown RBP21.84■■□□□ 1.09
GTF3C4-201ENST00000372146 BCANQ96GW7 911 aa21.84■■□□□ 1.09
GTF3C4-201ENST00000372146 GTF3C3Q9Y5Q9 886 aa21.8■■□□□ 1.08
GTF3C4-201ENST00000372146 CDK11AQ9UQ88 783 aaPredicted RBP21.8■■□□□ 1.08
GTF3C4-201ENST00000372146 TRIM41Q8WV44 630 aa21.8■■□□□ 1.08
GTF3C4-201ENST00000372146 DIEXFQ68CQ4 756 aaKnown RBP21.77■■□□□ 1.08
GTF3C4-201ENST00000372146 ANP32BQ92688 251 aaKnown RBP21.62■■□□□ 1.05
GTF3C4-201ENST00000372146 SLC4A1APQ9BWU0 796 aaKnown RBP21.61■■□□□ 1.05
GTF3C4-201ENST00000372146 ANP32AP39687 249 aaKnown RBP21.6■■□□□ 1.05
GTF3C4-201ENST00000372146 ITGAEP38570 1179 aa21.55■■□□□ 1.04
GTF3C4-201ENST00000372146 ZBTB47Q9UFB7 747 aaPredicted RBP21.47■■□□□ 1.03
GTF3C4-201ENST00000372146 NPM2Q86SE8 214 aaKnown RBP21.42■■□□□ 1.02
GTF3C4-201ENST00000372146 BCL11AQ9H165 835 aa21.42■■□□□ 1.02
GTF3C4-201ENST00000372146 NBR1Q14596 966 aa21.34■■□□□ 1.01
GTF3C4-201ENST00000372146 MYT1LQ9UL68 1186 aa21.33■■□□□ 1
GTF3C4-201ENST00000372146 HNRNPUL2Q1KMD3 747 aaKnown RBP21.32■■□□□ 1
GTF3C4-201ENST00000372146 CHIC1Q5VXU3 224 aa21.31■■□□□ 1
GTF3C4-201ENST00000372146 CANXP27824 592 aaKnown RBP21.28■■□□□ 1
GTF3C4-201ENST00000372146 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.28■■□□□ 1
GTF3C4-201ENST00000372146 ARXQ96QS3 562 aa21.26■□□□□ 0.99
GTF3C4-201ENST00000372146 HSP90AA1P07900 732 aaKnown RBP21.24■□□□□ 0.99
GTF3C4-201ENST00000372146 TNNT2P45379 298 aaPredicted RBP21.21■□□□□ 0.99
GTF3C4-201ENST00000372146 ANP32CO43423 234 aa21.17■□□□□ 0.98
GTF3C4-201ENST00000372146 ACIN1Q9UKV3 1341 aaKnown RBP21.15■□□□□ 0.98
GTF3C4-201ENST00000372146 SLC24A1O60721 1099 aa21.05■□□□□ 0.96
GTF3C4-201ENST00000372146 CDK11BP21127 795 aaKnown RBP21.02■□□□□ 0.96
GTF3C4-201ENST00000372146 UPF2Q9HAU5 1272 aaKnown RBP20.99■□□□□ 0.95
GTF3C4-201ENST00000372146 NEUROD1Q13562 356 aa20.94■□□□□ 0.94
GTF3C4-201ENST00000372146 AMER1Q5JTC6 1135 aaPredicted RBP20.91■□□□□ 0.94
GTF3C4-201ENST00000372146 FKBP8Q14318 412 aa20.91■□□□□ 0.94
GTF3C4-201ENST00000372146 LOC105371045A0A1W2PR82 267 aa20.9■□□□□ 0.94
GTF3C4-201ENST00000372146 TRIM44Q96DX7 344 aaPredicted RBP20.88■□□□□ 0.93
GTF3C4-201ENST00000372146 NAP1L5Q96NT1 182 aaPredicted RBP20.78■□□□□ 0.92
GTF3C4-201ENST00000372146 RTN4Q9NQC3 1192 aaKnown RBP20.78■□□□□ 0.92
GTF3C4-201ENST00000372146 ZNF326Q5BKZ1 582 aaKnown RBP20.77■□□□□ 0.92
GTF3C4-201ENST00000372146 FAM50AQ14320 339 aaKnown RBP20.76■□□□□ 0.91
GTF3C4-201ENST00000372146 NEFMP07197 916 aa20.73■□□□□ 0.91
GTF3C4-201ENST00000372146 TRIM52Q96A61 297 aa20.72■□□□□ 0.91
GTF3C4-201ENST00000372146 DNTTIP2Q5QJE6 756 aaKnown RBP20.69■□□□□ 0.9
GTF3C4-201ENST00000372146 ANP32EQ9BTT0 268 aa20.6■□□□□ 0.89
GTF3C4-201ENST00000372146 CCDC136Q96JN2 1154 aa20.59■□□□□ 0.89
GTF3C4-201ENST00000372146 ERICH6BQ5W0A0 696 aa20.58■□□□□ 0.89
GTF3C4-201ENST00000372146 PTMAP06454 111 aaKnown RBP20.58■□□□□ 0.88
GTF3C4-201ENST00000372146 SCAF1Q9H7N4 1312 aaKnown RBP20.54■□□□□ 0.88
GTF3C4-201ENST00000372146 NCLP19338 710 aaKnown RBP20.5■□□□□ 0.87
GTF3C4-201ENST00000372146 HNRNPUQ00839 825 aaKnown RBP eCLIP20.49■□□□□ 0.87
GTF3C4-201ENST00000372146 DDRGK1Q96HY6 314 aa20.48■□□□□ 0.87
GTF3C4-201ENST00000372146 BECN1Q14457 450 aa20.47■□□□□ 0.87
GTF3C4-201ENST00000372146 GOLGA6L22H0YM25 854 aa20.43■□□□□ 0.86
GTF3C4-201ENST00000372146 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.42■□□□□ 0.86
GTF3C4-201ENST00000372146 FAM9BQ8IZU0 186 aa20.37■□□□□ 0.85
GTF3C4-201ENST00000372146 ARID4BQ4LE39 1312 aaPredicted RBP20.36■□□□□ 0.85
GTF3C4-201ENST00000372146 IRX6P78412 446 aaPredicted RBP20.34■□□□□ 0.85
GTF3C4-201ENST00000372146 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.34■□□□□ 0.85
GTF3C4-201ENST00000372146 TPRNQ4KMQ1 711 aa20.34■□□□□ 0.85
GTF3C4-201ENST00000372146 SALL2Q9Y467 1007 aaPredicted RBP20.34■□□□□ 0.85
GTF3C4-201ENST00000372146 ZRSR1Q15695 479 aaKnown RBP20.34■□□□□ 0.85
GTF3C4-201ENST00000372146 CHAF1AQ13111 956 aaPredicted RBP20.28■□□□□ 0.84
GTF3C4-201ENST00000372146 TNNT3P45378 269 aaPredicted RBP20.25■□□□□ 0.83
GTF3C4-201ENST00000372146 LAS1LQ9Y4W2 734 aaKnown RBP20.24■□□□□ 0.83
GTF3C4-201ENST00000372146 ARID3AQ99856 593 aa20.23■□□□□ 0.83
GTF3C4-201ENST00000372146 MYH16Q9H6N6 1097 aa20.23■□□□□ 0.83
GTF3C4-201ENST00000372146 GOLGA6L6A8MZA4 724 aa20.2■□□□□ 0.82
GTF3C4-201ENST00000372146 MSNP26038 577 aaKnown RBP20.2■□□□□ 0.82
GTF3C4-201ENST00000372146 PLCB2Q00722 1185 aa20.19■□□□□ 0.82
GTF3C4-201ENST00000372146 PPM1GO15355 546 aaPredicted RBP20.16■□□□□ 0.82
GTF3C4-201ENST00000372146 DEKP35659 375 aaKnown RBP20.16■□□□□ 0.82
GTF3C4-201ENST00000372146 TULP1O00294 542 aaPredicted RBP20.16■□□□□ 0.82
GTF3C4-201ENST00000372146 NOP58Q9Y2X3 529 aaKnown RBP20.16■□□□□ 0.82
GTF3C4-201ENST00000372146 DDX10Q13206 875 aaKnown RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms