Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CX3CL1P78423 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
CX3CL1P78423 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CX3CL1P78423 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CX3CL1P78423 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CX3CL1P78423 AC068587.6-202ENST00000641839 5619 ntBASIC13.41□□□□□ -0.26
CX3CL1P78423 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 AL513523.2-202ENST00000427283 2040 ntBASIC13.4□□□□□ -0.26
CX3CL1P78423 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 AC078925.2-201ENST00000624013 1973 ntBASIC13.4□□□□□ -0.26
CX3CL1P78423 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 HYMAI-201ENST00000635591 3347 ntBASIC13.4□□□□□ -0.26
CX3CL1P78423 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CX3CL1P78423 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 PRSS29P-201ENST00000440800 595 ntBASIC13.4□□□□□ -0.26
CX3CL1P78423 AC009947.1-201ENST00000444350 727 ntBASIC13.4□□□□□ -0.26
CX3CL1P78423 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.4□□□□□ -0.26
CX3CL1P78423 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.4□□□□□ -0.26
CX3CL1P78423 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.4□□□□□ -0.26
CX3CL1P78423 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.4□□□□□ -0.26
CX3CL1P78423 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.4□□□□□ -0.26
CX3CL1P78423 MIR4751-201ENST00000578027 74 ntBASIC13.4□□□□□ -0.26
CX3CL1P78423 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
CX3CL1P78423 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.4□□□□□ -0.26
CX3CL1P78423 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC13.4□□□□□ -0.26
CX3CL1P78423 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CX3CL1P78423 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.27
CX3CL1P78423 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.27
CX3CL1P78423 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 LINC00895-201ENST00000629028 1637 ntBASIC13.39□□□□□ -0.27
CX3CL1P78423 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.39□□□□□ -0.27
CX3CL1P78423 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 ATP6V0CP3-201ENST00000417255 467 ntBASIC13.39□□□□□ -0.27
CX3CL1P78423 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 AC107918.2-201ENST00000530817 355 ntBASIC13.39□□□□□ -0.27
CX3CL1P78423 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC13.39□□□□□ -0.27
CX3CL1P78423 OR7E47P-204ENST00000575924 449 ntBASIC13.39□□□□□ -0.27
CX3CL1P78423 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 MPDU1-223ENST00000582151 728 ntBASIC13.39□□□□□ -0.27
CX3CL1P78423 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 AC010654.1-201ENST00000615722 808 ntBASIC13.39□□□□□ -0.27
CX3CL1P78423 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.39□□□□□ -0.27
CX3CL1P78423 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.39□□□□□ -0.27
CX3CL1P78423 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CX3CL1P78423 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms