RNA–Protein interactions for RNA: ENST00000335793.3

CDC42EP4-201, Transcript of CDC42 effector protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDC42EP4, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP4-201ENST00000335793 NISCHQ9Y2I1 1504 aa32.68■■■□□ 2.82
CDC42EP4-201ENST00000335793 SHROOM4Q9ULL8 1493 aa28.85■■■□□ 2.21
CDC42EP4-201ENST00000335793 SUPT5HO00267 1087 aaKnown RBP28.53■■■□□ 2.16
CDC42EP4-201ENST00000335793 DCAF8L2P0C7V8 631 aa28.26■■■□□ 2.12
CDC42EP4-201ENST00000335793 ZCCHC6Q5VYS8 1495 aaKnown RBP27.57■■■□□ 2
CDC42EP4-201ENST00000335793 CHIC1Q5VXU3 224 aa27.4■■□□□ 1.98
CDC42EP4-201ENST00000335793 CCDC180Q9P1Z9 1646 aa27.3■■□□□ 1.96
CDC42EP4-201ENST00000335793 PCGF6Q9BYE7 350 aa27.14■■□□□ 1.93
CDC42EP4-201ENST00000335793 MYO15BQ96JP2 1530 aa27.08■■□□□ 1.93
CDC42EP4-201ENST00000335793 HRCP23327 699 aa26.93■■□□□ 1.9
CDC42EP4-201ENST00000335793 LOC105371045A0A1W2PR82 267 aa26.87■■□□□ 1.89
CDC42EP4-201ENST00000335793 ABCC9O60706 1549 aa26.86■■□□□ 1.89
CDC42EP4-201ENST00000335793 PELP1Q8IZL8 1130 aaKnown RBP26.84■■□□□ 1.89
CDC42EP4-201ENST00000335793 PPARGC1BQ86YN6 1023 aaKnown RBP26.83■■□□□ 1.89
CDC42EP4-201ENST00000335793 EHMT2Q96KQ7 1210 aa26.51■■□□□ 1.83
CDC42EP4-201ENST00000335793 FAM9AQ8IZU1 332 aaPredicted RBP26.48■■□□□ 1.83
CDC42EP4-201ENST00000335793 DCAF1Q9Y4B6 1507 aa26.47■■□□□ 1.83
CDC42EP4-201ENST00000335793 TRIM41Q8WV44 630 aa26.39■■□□□ 1.82
CDC42EP4-201ENST00000335793 TRIM26Q12899 539 aaPredicted RBP26.29■■□□□ 1.8
CDC42EP4-201ENST00000335793 SCRIBQ14160 1630 aa26.19■■□□□ 1.78
CDC42EP4-201ENST00000335793 RSF1Q96T23 1441 aaPredicted RBP26.1■■□□□ 1.77
CDC42EP4-201ENST00000335793 SCAF1Q9H7N4 1312 aaKnown RBP26.06■■□□□ 1.76
CDC42EP4-201ENST00000335793 MYT1Q01538 1121 aa25.89■■□□□ 1.74
CDC42EP4-201ENST00000335793 ZEB1P37275 1124 aaPredicted RBP25.79■■□□□ 1.72
CDC42EP4-201ENST00000335793 RB1CC1Q8TDY2 1594 aa25.78■■□□□ 1.72
CDC42EP4-201ENST00000335793 CECR2Q9BXF3 1484 aa25.7■■□□□ 1.71
CDC42EP4-201ENST00000335793 TTBK1Q5TCY1 1321 aaPredicted RBP25.65■■□□□ 1.7
CDC42EP4-201ENST00000335793 PABPN1Q86U42 306 aaKnown RBP eCLIP25.6■■□□□ 1.69
CDC42EP4-201ENST00000335793 MROH2BQ7Z745 1585 aa25.52■■□□□ 1.68
CDC42EP4-201ENST00000335793 CCER1Q8TC90 406 aaPredicted RBP25.46■■□□□ 1.67
CDC42EP4-201ENST00000335793 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.45■■□□□ 1.66
CDC42EP4-201ENST00000335793 NACADO15069 1562 aa25.45■■□□□ 1.66
CDC42EP4-201ENST00000335793 WIZO95785 1651 aa25.36■■□□□ 1.65
CDC42EP4-201ENST00000335793 UBTFP17480 764 aaKnown RBP25.27■■□□□ 1.64
CDC42EP4-201ENST00000335793 GTF3C3Q9Y5Q9 886 aa25.15■■□□□ 1.62
CDC42EP4-201ENST00000335793 NEUROD1Q13562 356 aa25.12■■□□□ 1.61
CDC42EP4-201ENST00000335793 BAZ1AQ9NRL2 1556 aaPredicted RBP25.09■■□□□ 1.61
CDC42EP4-201ENST00000335793 ABCC8Q09428 1581 aa25.05■■□□□ 1.6
CDC42EP4-201ENST00000335793 RANGAP1P46060 587 aaPredicted RBP25.03■■□□□ 1.6
CDC42EP4-201ENST00000335793 ACIN1Q9UKV3 1341 aaKnown RBP25.02■■□□□ 1.6
CDC42EP4-201ENST00000335793 CCDC88BA6NC98 1476 aa25.01■■□□□ 1.59
CDC42EP4-201ENST00000335793 CSRNP3Q8WYN3 585 aa25■■□□□ 1.59
CDC42EP4-201ENST00000335793 SOGA1O94964 1423 aa24.95■■□□□ 1.58
CDC42EP4-201ENST00000335793 DIEXFQ68CQ4 756 aaKnown RBP24.92■■□□□ 1.58
CDC42EP4-201ENST00000335793 CEP162Q5TB80 1403 aa24.91■■□□□ 1.58
CDC42EP4-201ENST00000335793 HNRNPUL2Q1KMD3 747 aaKnown RBP24.85■■□□□ 1.57
CDC42EP4-201ENST00000335793 TOP2AP11388 1531 aaKnown RBP24.84■■□□□ 1.57
CDC42EP4-201ENST00000335793 APLP2Q06481 763 aa24.81■■□□□ 1.56
CDC42EP4-201ENST00000335793 SMARCA4P51532 1647 aa24.78■■□□□ 1.56
CDC42EP4-201ENST00000335793 RUSC2Q8N2Y8 1516 aa24.77■■□□□ 1.56
CDC42EP4-201ENST00000335793 TNIKQ9UKE5 1360 aa24.76■■□□□ 1.55
CDC42EP4-201ENST00000335793 CENPBP07199 599 aaPredicted RBP24.75■■□□□ 1.55
CDC42EP4-201ENST00000335793 BCL11AQ9H165 835 aa24.74■■□□□ 1.55
CDC42EP4-201ENST00000335793 UNC13AQ9UPW8 1703 aa24.74■■□□□ 1.55
CDC42EP4-201ENST00000335793 SMARCA2P51531 1590 aa24.72■■□□□ 1.55
CDC42EP4-201ENST00000335793 YTHDC1Q96MU7 727 aaKnown RBP24.68■■□□□ 1.54
CDC42EP4-201ENST00000335793 EIF4G1Q04637 1599 aaKnown RBP24.66■■□□□ 1.54
CDC42EP4-201ENST00000335793 WRNQ14191 1432 aaPredicted RBP eCLIP24.63■■□□□ 1.53
CDC42EP4-201ENST00000335793 BICRAQ9NZM4 1560 aa24.63■■□□□ 1.53
CDC42EP4-201ENST00000335793 EEA1Q15075 1411 aa24.62■■□□□ 1.53
CDC42EP4-201ENST00000335793 GOLGA3Q08378 1498 aa24.59■■□□□ 1.53
CDC42EP4-201ENST00000335793 ZNF316A6NFI3 1004 aaPredicted RBP24.58■■□□□ 1.53
CDC42EP4-201ENST00000335793 CLIP1P30622 1438 aa24.47■■□□□ 1.51
CDC42EP4-201ENST00000335793 CEP164Q9UPV0 1460 aa24.4■■□□□ 1.5
CDC42EP4-201ENST00000335793 PRKCSHP14314 528 aaPredicted RBP24.34■■□□□ 1.49
CDC42EP4-201ENST00000335793 BAZ1BQ9UIG0 1483 aaKnown RBP24.33■■□□□ 1.49
CDC42EP4-201ENST00000335793 MIER1Q8N108 512 aa24.31■■□□□ 1.48
CDC42EP4-201ENST00000335793 ITGAEP38570 1179 aa24.27■■□□□ 1.48
CDC42EP4-201ENST00000335793 DNAJC5BQ9UF47 199 aa24.27■■□□□ 1.48
CDC42EP4-201ENST00000335793 SYNJ1O43426 1573 aa24.26■■□□□ 1.47
CDC42EP4-201ENST00000335793 ATAD2BQ9ULI0 1458 aa24.26■■□□□ 1.47
CDC42EP4-201ENST00000335793 RAPGEF2Q9Y4G8 1499 aa24.26■■□□□ 1.47
CDC42EP4-201ENST00000335793 VPS8Q8N3P4 1428 aa24.24■■□□□ 1.47
CDC42EP4-201ENST00000335793 KANK4Q5T7N3 995 aaPredicted RBP24.08■■□□□ 1.45
CDC42EP4-201ENST00000335793 KIF21BO75037 1637 aa24.07■■□□□ 1.44
CDC42EP4-201ENST00000335793 ATP1B4Q9UN42 357 aaPredicted RBP24.06■■□□□ 1.44
CDC42EP4-201ENST00000335793 ANP32EQ9BTT0 268 aa24.04■■□□□ 1.44
CDC42EP4-201ENST00000335793 PEG3Q9GZU2 1588 aa24.03■■□□□ 1.44
CDC42EP4-201ENST00000335793 KIF27Q86VH2 1401 aa23.89■■□□□ 1.41
CDC42EP4-201ENST00000335793 P3H3Q8IVL6 736 aa23.87■■□□□ 1.41
CDC42EP4-201ENST00000335793 CC2D2AQ9P2K1 1620 aa23.86■■□□□ 1.41
CDC42EP4-201ENST00000335793 DHX57Q6P158 1386 aaKnown RBP23.85■■□□□ 1.41
CDC42EP4-201ENST00000335793 TOP2BQ02880 1626 aa23.84■■□□□ 1.41
CDC42EP4-201ENST00000335793 FAM50AQ14320 339 aaKnown RBP23.83■■□□□ 1.41
CDC42EP4-201ENST00000335793 PRXQ9BXM0 1461 aa23.79■■□□□ 1.4
CDC42EP4-201ENST00000335793 CLSPNQ9HAW4 1339 aa23.78■■□□□ 1.4
CDC42EP4-201ENST00000335793 ARAP1Q96P48 1450 aa23.78■■□□□ 1.4
CDC42EP4-201ENST00000335793 CCNB3Q8WWL7 1395 aa23.75■■□□□ 1.39
CDC42EP4-201ENST00000335793 CUX1P39880 1505 aa23.7■■□□□ 1.38
CDC42EP4-201ENST00000335793 ERICH3Q5RHP9 1530 aa23.68■■□□□ 1.38
CDC42EP4-201ENST00000335793 CUX2O14529 1486 aa23.67■■□□□ 1.38
CDC42EP4-201ENST00000335793 NCAPD3P42695 1498 aa23.65■■□□□ 1.38
CDC42EP4-201ENST00000335793 TSHZ2Q9NRE2 1034 aa23.64■■□□□ 1.37
CDC42EP4-201ENST00000335793 SIN3AQ96ST3 1273 aa23.6■■□□□ 1.37
CDC42EP4-201ENST00000335793 ARHGAP35Q9NRY4 1499 aa23.6■■□□□ 1.37
CDC42EP4-201ENST00000335793 BIVM-ERCC5R4GMW8 1640 aa23.6■■□□□ 1.37
CDC42EP4-201ENST00000335793 CARMIL1Q5VZK9 1371 aa23.59■■□□□ 1.37
CDC42EP4-201ENST00000335793 RAB3GAP2Q9H2M9 1393 aa23.59■■□□□ 1.37
CDC42EP4-201ENST00000335793 DDX10Q13206 875 aaKnown RBP23.58■■□□□ 1.37
CDC42EP4-201ENST00000335793 HIRIP3Q9BW71 556 aaPredicted RBP23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms