RNA–Protein interactions for RNA: ENST00000374342.6

PTPN20-203, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best) BASIC

Gene PTPN20, Length 1,929 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-203ENST00000374342 NISCHQ9Y2I1 1504 aa37.85■■■■□ 3.65
PTPN20-203ENST00000374342 CCDC180Q9P1Z9 1646 aa32.98■■■□□ 2.87
PTPN20-203ENST00000374342 ZCCHC6Q5VYS8 1495 aaKnown RBP31.87■■■□□ 2.69
PTPN20-203ENST00000374342 DCAF1Q9Y4B6 1507 aa31.24■■■□□ 2.59
PTPN20-203ENST00000374342 DCAF8L2P0C7V8 631 aa31.2■■■□□ 2.58
PTPN20-203ENST00000374342 SHROOM4Q9ULL8 1493 aa31.13■■■□□ 2.57
PTPN20-203ENST00000374342 ABCC9O60706 1549 aa30.99■■■□□ 2.55
PTPN20-203ENST00000374342 MYO15BQ96JP2 1530 aa30.76■■■□□ 2.51
PTPN20-203ENST00000374342 NACADO15069 1562 aa30.58■■■□□ 2.49
PTPN20-203ENST00000374342 SCRIBQ14160 1630 aa30.43■■■□□ 2.46
PTPN20-203ENST00000374342 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.44
PTPN20-203ENST00000374342 SUPT5HO00267 1087 aaKnown RBP29.99■■■□□ 2.39
PTPN20-203ENST00000374342 UNC13AQ9UPW8 1703 aa29.87■■■□□ 2.37
PTPN20-203ENST00000374342 RSF1Q96T23 1441 aaPredicted RBP29.43■■■□□ 2.3
PTPN20-203ENST00000374342 CECR2Q9BXF3 1484 aa29.42■■■□□ 2.3
PTPN20-203ENST00000374342 BICRAQ9NZM4 1560 aa29.41■■■□□ 2.3
PTPN20-203ENST00000374342 MROH2BQ7Z745 1585 aa29.29■■■□□ 2.28
PTPN20-203ENST00000374342 BAZ1AQ9NRL2 1556 aaPredicted RBP29.23■■■□□ 2.27
PTPN20-203ENST00000374342 PABPN1Q86U42 306 aaKnown RBP eCLIP29.21■■■□□ 2.27
PTPN20-203ENST00000374342 WIZO95785 1651 aa29.14■■■□□ 2.25
PTPN20-203ENST00000374342 SMARCA4P51532 1647 aa29.13■■■□□ 2.25
PTPN20-203ENST00000374342 TOP2AP11388 1531 aaKnown RBP28.78■■■□□ 2.2
PTPN20-203ENST00000374342 CHIC1Q5VXU3 224 aa28.76■■■□□ 2.19
PTPN20-203ENST00000374342 PEG3Q9GZU2 1588 aa28.69■■■□□ 2.18
PTPN20-203ENST00000374342 SMARCA2P51531 1590 aa28.54■■■□□ 2.16
PTPN20-203ENST00000374342 EIF4G1Q04637 1599 aaKnown RBP28.51■■■□□ 2.16
PTPN20-203ENST00000374342 ATAD2BQ9ULI0 1458 aa28.51■■■□□ 2.15
PTPN20-203ENST00000374342 CCDC88BA6NC98 1476 aa28.45■■■□□ 2.14
PTPN20-203ENST00000374342 BAZ1BQ9UIG0 1483 aaKnown RBP28.41■■■□□ 2.14
PTPN20-203ENST00000374342 HMGXB3Q12766 1538 aa28.24■■■□□ 2.11
PTPN20-203ENST00000374342 NCAPD3P42695 1498 aa28.17■■■□□ 2.1
PTPN20-203ENST00000374342 TRIM41Q8WV44 630 aa28.13■■■□□ 2.09
PTPN20-203ENST00000374342 CC2D2AQ9P2K1 1620 aa28.06■■■□□ 2.08
PTPN20-203ENST00000374342 ABCC8Q09428 1581 aa28.03■■■□□ 2.08
PTPN20-203ENST00000374342 PRDM2Q13029 1718 aa27.72■■■□□ 2.03
PTPN20-203ENST00000374342 WRNQ14191 1432 aaPredicted RBP eCLIP27.72■■■□□ 2.03
PTPN20-203ENST00000374342 FAM9AQ8IZU1 332 aaPredicted RBP27.71■■■□□ 2.03
PTPN20-203ENST00000374342 LOC105371045A0A1W2PR82 267 aa27.7■■■□□ 2.02
PTPN20-203ENST00000374342 SYNJ1O43426 1573 aa27.69■■■□□ 2.02
PTPN20-203ENST00000374342 CFTRP13569 1480 aa27.64■■■□□ 2.02
PTPN20-203ENST00000374342 BIVM-ERCC5R4GMW8 1640 aa27.52■■■□□ 2
PTPN20-203ENST00000374342 TOP2BQ02880 1626 aa27.51■■□□□ 1.99
PTPN20-203ENST00000374342 CADPSQ9ULU8 1353 aa27.47■■□□□ 1.99
PTPN20-203ENST00000374342 SOGA1O94964 1423 aa27.46■■□□□ 1.99
PTPN20-203ENST00000374342 EEA1Q15075 1411 aa27.39■■□□□ 1.98
PTPN20-203ENST00000374342 CUX1P39880 1505 aa27.39■■□□□ 1.98
PTPN20-203ENST00000374342 EHMT2Q96KQ7 1210 aa27.37■■□□□ 1.97
PTPN20-203ENST00000374342 RUSC2Q8N2Y8 1516 aa27.37■■□□□ 1.97
PTPN20-203ENST00000374342 NESP48681 1621 aa27.28■■□□□ 1.96
PTPN20-203ENST00000374342 LAMC3Q9Y6N6 1575 aa27.26■■□□□ 1.96
PTPN20-203ENST00000374342 FANCD2Q9BXW9 1451 aa27.25■■□□□ 1.95
PTPN20-203ENST00000374342 DNAJC5BQ9UF47 199 aa27.2■■□□□ 1.94
PTPN20-203ENST00000374342 CSRNP3Q8WYN3 585 aa27.18■■□□□ 1.94
PTPN20-203ENST00000374342 KIF21BO75037 1637 aa27.13■■□□□ 1.93
PTPN20-203ENST00000374342 GOLGA3Q08378 1498 aa27.1■■□□□ 1.93
PTPN20-203ENST00000374342 DNMBPQ6XZF7 1577 aa27.08■■□□□ 1.93
PTPN20-203ENST00000374342 CEP164Q9UPV0 1460 aa27.07■■□□□ 1.92
PTPN20-203ENST00000374342 FGD5Q6ZNL6 1462 aa27.06■■□□□ 1.92
PTPN20-203ENST00000374342 KIF21AQ7Z4S6 1674 aa27.05■■□□□ 1.92
PTPN20-203ENST00000374342 TOPBP1Q92547 1522 aa26.99■■□□□ 1.91
PTPN20-203ENST00000374342 PDS5BQ9NTI5 1447 aa26.98■■□□□ 1.91
PTPN20-203ENST00000374342 KIF27Q86VH2 1401 aa26.98■■□□□ 1.91
PTPN20-203ENST00000374342 TNIKQ9UKE5 1360 aa26.97■■□□□ 1.91
PTPN20-203ENST00000374342 CEP162Q5TB80 1403 aa26.93■■□□□ 1.9
PTPN20-203ENST00000374342 URB2Q14146 1524 aaKnown RBP26.92■■□□□ 1.9
PTPN20-203ENST00000374342 UBTFP17480 764 aaKnown RBP26.92■■□□□ 1.9
PTPN20-203ENST00000374342 CUX2O14529 1486 aa26.91■■□□□ 1.9
PTPN20-203ENST00000374342 RAPGEF2Q9Y4G8 1499 aa26.91■■□□□ 1.9
PTPN20-203ENST00000374342 POLA1P09884 1462 aaPredicted RBP26.87■■□□□ 1.89
PTPN20-203ENST00000374342 ERICH3Q5RHP9 1530 aa26.87■■□□□ 1.89
PTPN20-203ENST00000374342 PRXQ9BXM0 1461 aa26.84■■□□□ 1.89
PTPN20-203ENST00000374342 WDR97A6NE52 1622 aa26.79■■□□□ 1.88
PTPN20-203ENST00000374342 RAD54L2Q9Y4B4 1467 aa26.79■■□□□ 1.88
PTPN20-203ENST00000374342 ABCA10Q8WWZ4 1543 aa26.77■■□□□ 1.88
PTPN20-203ENST00000374342 MRC2Q9UBG0 1479 aa26.69■■□□□ 1.86
PTPN20-203ENST00000374342 PCGF6Q9BYE7 350 aa26.69■■□□□ 1.86
PTPN20-203ENST00000374342 CLIP1P30622 1438 aa26.66■■□□□ 1.86
PTPN20-203ENST00000374342 IGF1RP08069 1367 aa26.66■■□□□ 1.86
PTPN20-203ENST00000374342 ABCA5Q8WWZ7 1642 aa26.62■■□□□ 1.85
PTPN20-203ENST00000374342 TARBP1Q13395 1621 aaKnown RBP26.6■■□□□ 1.85
PTPN20-203ENST00000374342 CUL7Q14999 1698 aa26.59■■□□□ 1.85
PTPN20-203ENST00000374342 TRIM26Q12899 539 aaPredicted RBP26.57■■□□□ 1.84
PTPN20-203ENST00000374342 CARMIL1Q5VZK9 1371 aa26.57■■□□□ 1.84
PTPN20-203ENST00000374342 WDR62O43379 1518 aa26.55■■□□□ 1.84
PTPN20-203ENST00000374342 ERCC6Q03468 1493 aa26.54■■□□□ 1.84
PTPN20-203ENST00000374342 RANGAP1P46060 587 aaPredicted RBP26.51■■□□□ 1.83
PTPN20-203ENST00000374342 THOC2Q8NI27 1593 aaKnown RBP26.49■■□□□ 1.83
PTPN20-203ENST00000374342 GAPVD1Q14C86 1478 aa26.48■■□□□ 1.83
PTPN20-203ENST00000374342 TDRD9Q8NDG6 1382 aaKnown RBP26.48■■□□□ 1.83
PTPN20-203ENST00000374342 PPARGC1BQ86YN6 1023 aaKnown RBP26.47■■□□□ 1.83
PTPN20-203ENST00000374342 PBRM1Q86U86 1689 aa26.46■■□□□ 1.83
PTPN20-203ENST00000374342 VPS8Q8N3P4 1428 aa26.45■■□□□ 1.82
PTPN20-203ENST00000374342 ARAP1Q96P48 1450 aa26.41■■□□□ 1.82
PTPN20-203ENST00000374342 CTTNBP2Q8WZ74 1663 aa26.4■■□□□ 1.82
PTPN20-203ENST00000374342 IFT140Q96RY7 1462 aa26.37■■□□□ 1.81
PTPN20-203ENST00000374342 ARHGAP35Q9NRY4 1499 aa26.33■■□□□ 1.81
PTPN20-203ENST00000374342 AQRO60306 1485 aaKnown RBP eCLIP26.29■■□□□ 1.8
PTPN20-203ENST00000374342 TTBK1Q5TCY1 1321 aaPredicted RBP26.27■■□□□ 1.8
PTPN20-203ENST00000374342 ADAMTS12P58397 1594 aa26.27■■□□□ 1.8
PTPN20-203ENST00000374342 ZNF608Q9ULD9 1512 aaPredicted RBP26.26■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms