Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AL139011.1-202ENST00000642063 584 ntBASIC16.16■□□□□ 0.18
SEMA3DO95025 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
SEMA3DO95025 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SEMA3DO95025 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.16■□□□□ 0.18
SEMA3DO95025 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 AL391256.1-201ENST00000443260 1855 ntBASIC16.16■□□□□ 0.18
SEMA3DO95025 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.16■□□□□ 0.18
SEMA3DO95025 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 FLJ38576-201ENST00000623820 2459 ntBASIC16.16■□□□□ 0.18
SEMA3DO95025 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
SEMA3DO95025 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
SEMA3DO95025 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 HLA-J-202ENST00000469281 1241 ntBASIC16.15■□□□□ 0.18
SEMA3DO95025 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 AC105339.3-201ENST00000560043 636 ntBASIC16.15■□□□□ 0.18
SEMA3DO95025 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.15■□□□□ 0.18
SEMA3DO95025 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SEMA3DO95025 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.14■□□□□ 0.18
SEMA3DO95025 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.14■□□□□ 0.18
SEMA3DO95025 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.14■□□□□ 0.17
SEMA3DO95025 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.14■□□□□ 0.17
SEMA3DO95025 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.14■□□□□ 0.17
SEMA3DO95025 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 AC091167.2-201ENST00000579581 588 ntBASIC16.14■□□□□ 0.17
SEMA3DO95025 AC008667.4-201ENST00000607370 168 ntBASIC16.14■□□□□ 0.17
SEMA3DO95025 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.14■□□□□ 0.17
SEMA3DO95025 REXO1L3P-201ENST00000622202 1288 ntBASIC16.14■□□□□ 0.17
SEMA3DO95025 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 AC006277.1-201ENST00000624348 1610 ntBASIC16.14■□□□□ 0.17
SEMA3DO95025 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 PCDHB19P-201ENST00000570871 2371 ntBASIC16.14■□□□□ 0.17
SEMA3DO95025 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SEMA3DO95025 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.14■□□□□ 0.17
SEMA3DO95025 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms