RNA–Protein interactions for RNA: ENST00000417664.6

SSBP3-205, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 1,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-205ENST00000417664 NISCHQ9Y2I1 1504 aa37.55■■■■□ 3.6
SSBP3-205ENST00000417664 CCDC180Q9P1Z9 1646 aa32.68■■■□□ 2.82
SSBP3-205ENST00000417664 ZCCHC6Q5VYS8 1495 aaKnown RBP31.59■■■□□ 2.65
SSBP3-205ENST00000417664 DCAF1Q9Y4B6 1507 aa31.14■■■□□ 2.58
SSBP3-205ENST00000417664 DCAF8L2P0C7V8 631 aa30.84■■■□□ 2.53
SSBP3-205ENST00000417664 MYO15BQ96JP2 1530 aa30.72■■■□□ 2.51
SSBP3-205ENST00000417664 SHROOM4Q9ULL8 1493 aa30.62■■■□□ 2.49
SSBP3-205ENST00000417664 ABCC9O60706 1549 aa30.59■■■□□ 2.49
SSBP3-205ENST00000417664 NACADO15069 1562 aa30.4■■■□□ 2.46
SSBP3-205ENST00000417664 RB1CC1Q8TDY2 1594 aa30.06■■■□□ 2.4
SSBP3-205ENST00000417664 SCRIBQ14160 1630 aa29.96■■■□□ 2.39
SSBP3-205ENST00000417664 SUPT5HO00267 1087 aaKnown RBP29.63■■■□□ 2.33
SSBP3-205ENST00000417664 UNC13AQ9UPW8 1703 aa29.36■■■□□ 2.29
SSBP3-205ENST00000417664 RSF1Q96T23 1441 aaPredicted RBP29.19■■■□□ 2.26
SSBP3-205ENST00000417664 BICRAQ9NZM4 1560 aa29.09■■■□□ 2.25
SSBP3-205ENST00000417664 CECR2Q9BXF3 1484 aa29.08■■■□□ 2.25
SSBP3-205ENST00000417664 BAZ1AQ9NRL2 1556 aaPredicted RBP29■■■□□ 2.23
SSBP3-205ENST00000417664 MROH2BQ7Z745 1585 aa28.96■■■□□ 2.23
SSBP3-205ENST00000417664 PABPN1Q86U42 306 aaKnown RBP eCLIP28.86■■■□□ 2.21
SSBP3-205ENST00000417664 SMARCA4P51532 1647 aa28.8■■■□□ 2.2
SSBP3-205ENST00000417664 WIZO95785 1651 aa28.71■■■□□ 2.19
SSBP3-205ENST00000417664 CHIC1Q5VXU3 224 aa28.52■■■□□ 2.16
SSBP3-205ENST00000417664 PEG3Q9GZU2 1588 aa28.51■■■□□ 2.15
SSBP3-205ENST00000417664 TOP2AP11388 1531 aaKnown RBP28.5■■■□□ 2.15
SSBP3-205ENST00000417664 SMARCA2P51531 1590 aa28.33■■■□□ 2.13
SSBP3-205ENST00000417664 ATAD2BQ9ULI0 1458 aa28.29■■■□□ 2.12
SSBP3-205ENST00000417664 EIF4G1Q04637 1599 aaKnown RBP28.22■■■□□ 2.11
SSBP3-205ENST00000417664 CCDC88BA6NC98 1476 aa28.18■■■□□ 2.1
SSBP3-205ENST00000417664 BAZ1BQ9UIG0 1483 aaKnown RBP28.14■■■□□ 2.1
SSBP3-205ENST00000417664 NCAPD3P42695 1498 aa28.06■■■□□ 2.08
SSBP3-205ENST00000417664 HMGXB3Q12766 1538 aa28.03■■■□□ 2.08
SSBP3-205ENST00000417664 TRIM41Q8WV44 630 aa27.91■■■□□ 2.06
SSBP3-205ENST00000417664 CC2D2AQ9P2K1 1620 aa27.72■■■□□ 2.03
SSBP3-205ENST00000417664 ABCC8Q09428 1581 aa27.59■■■□□ 2.01
SSBP3-205ENST00000417664 WRNQ14191 1432 aaPredicted RBP eCLIP27.49■■□□□ 1.997e-6■■■■■ 31.3
SSBP3-205ENST00000417664 CFTRP13569 1480 aa27.48■■□□□ 1.99
SSBP3-205ENST00000417664 LOC105371045A0A1W2PR82 267 aa27.36■■□□□ 1.97
SSBP3-205ENST00000417664 CADPSQ9ULU8 1353 aa27.34■■□□□ 1.97
SSBP3-205ENST00000417664 PRDM2Q13029 1718 aa27.32■■□□□ 1.96
SSBP3-205ENST00000417664 EEA1Q15075 1411 aa27.3■■□□□ 1.96
SSBP3-205ENST00000417664 SYNJ1O43426 1573 aa27.3■■□□□ 1.96
SSBP3-205ENST00000417664 FAM9AQ8IZU1 332 aaPredicted RBP27.3■■□□□ 1.96
SSBP3-205ENST00000417664 TOP2BQ02880 1626 aa27.25■■□□□ 1.95
SSBP3-205ENST00000417664 BIVM-ERCC5R4GMW8 1640 aa27.2■■□□□ 1.95
SSBP3-205ENST00000417664 SOGA1O94964 1423 aa27.15■■□□□ 1.94
SSBP3-205ENST00000417664 CUX1P39880 1505 aa27.08■■□□□ 1.93
SSBP3-205ENST00000417664 LAMC3Q9Y6N6 1575 aa27.06■■□□□ 1.92
SSBP3-205ENST00000417664 CSRNP3Q8WYN3 585 aa27.05■■□□□ 1.92
SSBP3-205ENST00000417664 FANCD2Q9BXW9 1451 aa27■■□□□ 1.91
SSBP3-205ENST00000417664 RUSC2Q8N2Y8 1516 aa26.99■■□□□ 1.91
SSBP3-205ENST00000417664 NESP48681 1621 aa26.91■■□□□ 1.9
SSBP3-205ENST00000417664 PDS5BQ9NTI5 1447 aa26.86■■□□□ 1.89
SSBP3-205ENST00000417664 CEP164Q9UPV0 1460 aa26.86■■□□□ 1.89
SSBP3-205ENST00000417664 KIF21BO75037 1637 aa26.86■■□□□ 1.89
SSBP3-205ENST00000417664 GOLGA3Q08378 1498 aa26.85■■□□□ 1.89
SSBP3-205ENST00000417664 DNAJC5BQ9UF47 199 aa26.84■■□□□ 1.89
SSBP3-205ENST00000417664 TNIKQ9UKE5 1360 aa26.83■■□□□ 1.89
SSBP3-205ENST00000417664 EHMT2Q96KQ7 1210 aa26.82■■□□□ 1.88
SSBP3-205ENST00000417664 DNMBPQ6XZF7 1577 aa26.81■■□□□ 1.88
SSBP3-205ENST00000417664 KIF27Q86VH2 1401 aa26.81■■□□□ 1.88
SSBP3-205ENST00000417664 FGD5Q6ZNL6 1462 aa26.75■■□□□ 1.87
SSBP3-205ENST00000417664 TOPBP1Q92547 1522 aa26.73■■□□□ 1.87
SSBP3-205ENST00000417664 UBTFP17480 764 aaKnown RBP26.69■■□□□ 1.86
SSBP3-205ENST00000417664 ERICH3Q5RHP9 1530 aa26.67■■□□□ 1.86
SSBP3-205ENST00000417664 PRXQ9BXM0 1461 aa26.66■■□□□ 1.86
SSBP3-205ENST00000417664 CEP162Q5TB80 1403 aa26.65■■□□□ 1.86
SSBP3-205ENST00000417664 CUX2O14529 1486 aa26.63■■□□□ 1.85
SSBP3-205ENST00000417664 URB2Q14146 1524 aaKnown RBP26.62■■□□□ 1.85
SSBP3-205ENST00000417664 POLA1P09884 1462 aaPredicted RBP26.62■■□□□ 1.85
SSBP3-205ENST00000417664 RAPGEF2Q9Y4G8 1499 aa26.6■■□□□ 1.85
SSBP3-205ENST00000417664 KIF21AQ7Z4S6 1674 aa26.6■■□□□ 1.85
SSBP3-205ENST00000417664 ABCA10Q8WWZ4 1543 aa26.58■■□□□ 1.85
SSBP3-205ENST00000417664 IGF1RP08069 1367 aa26.51■■□□□ 1.83
SSBP3-205ENST00000417664 RAD54L2Q9Y4B4 1467 aa26.47■■□□□ 1.83
SSBP3-205ENST00000417664 MRC2Q9UBG0 1479 aa26.46■■□□□ 1.83
SSBP3-205ENST00000417664 WDR97A6NE52 1622 aa26.42■■□□□ 1.82
SSBP3-205ENST00000417664 TRIM26Q12899 539 aaPredicted RBP26.41■■□□□ 1.82
SSBP3-205ENST00000417664 CLIP1P30622 1438 aa26.41■■□□□ 1.82
SSBP3-205ENST00000417664 CARMIL1Q5VZK9 1371 aa26.4■■□□□ 1.82
SSBP3-205ENST00000417664 PCGF6Q9BYE7 350 aa26.36■■□□□ 1.81
SSBP3-205ENST00000417664 CUL7Q14999 1698 aa26.32■■□□□ 1.8
SSBP3-205ENST00000417664 WDR62O43379 1518 aa26.31■■□□□ 1.8
SSBP3-205ENST00000417664 ABCA5Q8WWZ7 1642 aa26.31■■□□□ 1.8
SSBP3-205ENST00000417664 TARBP1Q13395 1621 aaKnown RBP26.3■■□□□ 1.8
SSBP3-205ENST00000417664 ERCC6Q03468 1493 aa26.26■■□□□ 1.79
SSBP3-205ENST00000417664 GAPVD1Q14C86 1478 aa26.26■■□□□ 1.79
SSBP3-205ENST00000417664 VPS8Q8N3P4 1428 aa26.23■■□□□ 1.79
SSBP3-205ENST00000417664 TDRD9Q8NDG6 1382 aaKnown RBP26.21■■□□□ 1.79
SSBP3-205ENST00000417664 IFT140Q96RY7 1462 aa26.19■■□□□ 1.78
SSBP3-205ENST00000417664 THOC2Q8NI27 1593 aaKnown RBP26.14■■□□□ 1.78
SSBP3-205ENST00000417664 ARAP1Q96P48 1450 aa26.09■■□□□ 1.77
SSBP3-205ENST00000417664 ARHGAP35Q9NRY4 1499 aa26.06■■□□□ 1.76
SSBP3-205ENST00000417664 RANGAP1P46060 587 aaPredicted RBP26.06■■□□□ 1.76
SSBP3-205ENST00000417664 PBRM1Q86U86 1689 aa26.05■■□□□ 1.76
SSBP3-205ENST00000417664 GRIN2BQ13224 1484 aa26.04■■□□□ 1.76
SSBP3-205ENST00000417664 FHAD1B1AJZ9 1412 aa26.01■■□□□ 1.75
SSBP3-205ENST00000417664 AQRO60306 1485 aaKnown RBP eCLIP26.01■■□□□ 1.751e-7■■■■■ 27.3
SSBP3-205ENST00000417664 CTTNBP2Q8WZ74 1663 aa26■■□□□ 1.75
SSBP3-205ENST00000417664 APLP2Q06481 763 aa26■■□□□ 1.75
SSBP3-205ENST00000417664 PPARGC1BQ86YN6 1023 aaKnown RBP25.99■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms