RNA–Protein interactions for RNA: ENST00000308330.2

LEMD3-201, Transcript of LEM domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LEMD3, Length 4,764 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-201ENST00000308330 DCAF8L2P0C7V8 631 aa27.01■■□□□ 1.91
LEMD3-201ENST00000308330 NISCHQ9Y2I1 1504 aa26.56■■□□□ 1.84
LEMD3-201ENST00000308330 PELP1Q8IZL8 1130 aaKnown RBP26.31■■□□□ 1.8
LEMD3-201ENST00000308330 MYT1Q01538 1121 aa26.27■■□□□ 1.8
LEMD3-201ENST00000308330 SUPT5HO00267 1087 aaKnown RBP25.01■■□□□ 1.59
LEMD3-201ENST00000308330 SHROOM4Q9ULL8 1493 aa24.93■■□□□ 1.58
LEMD3-201ENST00000308330 TTBK1Q5TCY1 1321 aaPredicted RBP24.42■■□□□ 1.5
LEMD3-201ENST00000308330 ERICH6Q7L0X2 663 aa24.03■■□□□ 1.44
LEMD3-201ENST00000308330 EHMT2Q96KQ7 1210 aa23.99■■□□□ 1.43
LEMD3-201ENST00000308330 CENPBP07199 599 aaPredicted RBP23.88■■□□□ 1.41
LEMD3-201ENST00000308330 HRCP23327 699 aa23.59■■□□□ 1.37
LEMD3-201ENST00000308330 FAM9AQ8IZU1 332 aaPredicted RBP23.55■■□□□ 1.36
LEMD3-201ENST00000308330 PCGF6Q9BYE7 350 aa23.52■■□□□ 1.36
LEMD3-201ENST00000308330 ABCC9O60706 1549 aa23.38■■□□□ 1.33
LEMD3-201ENST00000308330 APLP2Q06481 763 aa23.33■■□□□ 1.33
LEMD3-201ENST00000308330 ZEB1P37275 1124 aaPredicted RBP23.26■■□□□ 1.31
LEMD3-201ENST00000308330 TRIM41Q8WV44 630 aa23.2■■□□□ 1.3
LEMD3-201ENST00000308330 RANGAP1P46060 587 aaPredicted RBP23.2■■□□□ 1.3
LEMD3-201ENST00000308330 CCER1Q8TC90 406 aaPredicted RBP23.2■■□□□ 1.3
LEMD3-201ENST00000308330 PABPN1Q86U42 306 aaKnown RBP eCLIP23.1■■□□□ 1.29
LEMD3-201ENST00000308330 ATP1B4Q9UN42 357 aaPredicted RBP22.96■■□□□ 1.27
LEMD3-201ENST00000308330 PPARGC1BQ86YN6 1023 aaKnown RBP22.93■■□□□ 1.26
LEMD3-201ENST00000308330 UBTFP17480 764 aaKnown RBP22.9■■□□□ 1.26
LEMD3-201ENST00000308330 BCL11AQ9H165 835 aa22.81■■□□□ 1.24
LEMD3-201ENST00000308330 YTHDC1Q96MU7 727 aaKnown RBP22.77■■□□□ 1.24
LEMD3-201ENST00000308330 GTF3C3Q9Y5Q9 886 aa22.77■■□□□ 1.24
LEMD3-201ENST00000308330 SCAF1Q9H7N4 1312 aaKnown RBP22.57■■□□□ 1.2
LEMD3-201ENST00000308330 ACIN1Q9UKV3 1341 aaKnown RBP22.51■■□□□ 1.19
LEMD3-201ENST00000308330 NEFLP07196 543 aa22.46■■□□□ 1.19
LEMD3-201ENST00000308330 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.38■■□□□ 1.17
LEMD3-201ENST00000308330 HNRNPUL2Q1KMD3 747 aaKnown RBP22.38■■□□□ 1.17
LEMD3-201ENST00000308330 PRKCSHP14314 528 aaPredicted RBP22.37■■□□□ 1.17
LEMD3-201ENST00000308330 SLC24A1O60721 1099 aa22.31■■□□□ 1.16
LEMD3-201ENST00000308330 RTL5Q5HYW3 569 aaPredicted RBP22.27■■□□□ 1.16
LEMD3-201ENST00000308330 EIF5BO60841 1220 aaKnown RBP22.27■■□□□ 1.16
LEMD3-201ENST00000308330 GLIPR1L2Q4G1C9 344 aa22.27■■□□□ 1.16
LEMD3-201ENST00000308330 CHIC1Q5VXU3 224 aa22.2■■□□□ 1.14
LEMD3-201ENST00000308330 MYT1LQ9UL68 1186 aa22.19■■□□□ 1.14
LEMD3-201ENST00000308330 ANP32EQ9BTT0 268 aa22.19■■□□□ 1.14
LEMD3-201ENST00000308330 TRIM26Q12899 539 aaPredicted RBP22.14■■□□□ 1.14
LEMD3-201ENST00000308330 LOC105371045A0A1W2PR82 267 aa22.1■■□□□ 1.13
LEMD3-201ENST00000308330 FBLN2P98095 1184 aa22.07■■□□□ 1.12
LEMD3-201ENST00000308330 DIEXFQ68CQ4 756 aaKnown RBP22.04■■□□□ 1.12
LEMD3-201ENST00000308330 SCRIBQ14160 1630 aa22.03■■□□□ 1.12
LEMD3-201ENST00000308330 ITGAEP38570 1179 aa22■■□□□ 1.11
LEMD3-201ENST00000308330 NEUROD1Q13562 356 aa21.95■■□□□ 1.1
LEMD3-201ENST00000308330 ZCCHC6Q5VYS8 1495 aaKnown RBP21.89■■□□□ 1.1
LEMD3-201ENST00000308330 CCDC180Q9P1Z9 1646 aa21.87■■□□□ 1.09
LEMD3-201ENST00000308330 RB1CC1Q8TDY2 1594 aa21.67■■□□□ 1.06
LEMD3-201ENST00000308330 DAXXQ9UER7 740 aaPredicted RBP21.66■■□□□ 1.06
LEMD3-201ENST00000308330 BCANQ96GW7 911 aa21.64■■□□□ 1.06
LEMD3-201ENST00000308330 CLSPNQ9HAW4 1339 aa21.6■■□□□ 1.05
LEMD3-201ENST00000308330 P3H3Q8IVL6 736 aa21.56■■□□□ 1.04
LEMD3-201ENST00000308330 FAM50AQ14320 339 aaKnown RBP21.53■■□□□ 1.04
LEMD3-201ENST00000308330 ARID3CA6NKF2 412 aa21.53■■□□□ 1.04
LEMD3-201ENST00000308330 CSRNP3Q8WYN3 585 aa21.53■■□□□ 1.04
LEMD3-201ENST00000308330 CDK11AQ9UQ88 783 aaPredicted RBP21.51■■□□□ 1.03
LEMD3-201ENST00000308330 NACADO15069 1562 aa21.45■■□□□ 1.02
LEMD3-201ENST00000308330 POLR3GLQ9BT43 218 aa21.44■■□□□ 1.02
LEMD3-201ENST00000308330 ZNF316A6NFI3 1004 aaPredicted RBP21.43■■□□□ 1.02
LEMD3-201ENST00000308330 TRIM52Q96A61 297 aa21.34■■□□□ 1.01
LEMD3-201ENST00000308330 PODXL2Q9NZ53 605 aa21.31■■□□□ 1
LEMD3-201ENST00000308330 NBR1Q14596 966 aa21.3■■□□□ 1
LEMD3-201ENST00000308330 RTN4Q9NQC3 1192 aaKnown RBP21.27■■□□□ 1
LEMD3-201ENST00000308330 NPM1P06748 294 aaKnown RBP eCLIP21.27■□□□□ 0.99
LEMD3-201ENST00000308330 CHMP7Q8WUX9 453 aaPredicted RBP21.24■□□□□ 0.99
LEMD3-201ENST00000308330 CNGB1Q14028 1251 aaPredicted RBP21.23■□□□□ 0.99
LEMD3-201ENST00000308330 ZNF777Q9ULD5 760 aaPredicted RBP21.21■□□□□ 0.99
LEMD3-201ENST00000308330 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.2■□□□□ 0.98
LEMD3-201ENST00000308330 SLC4A1APQ9BWU0 796 aaKnown RBP21.18■□□□□ 0.98
LEMD3-201ENST00000308330 DEKP35659 375 aaKnown RBP21.17■□□□□ 0.98
LEMD3-201ENST00000308330 CCDC136Q96JN2 1154 aa21.17■□□□□ 0.98
LEMD3-201ENST00000308330 PKNOX2Q96KN3 472 aa21.17■□□□□ 0.98
LEMD3-201ENST00000308330 ANP32AP39687 249 aaKnown RBP21.17■□□□□ 0.98
LEMD3-201ENST00000308330 ERICH6BQ5W0A0 696 aa21.14■□□□□ 0.98
LEMD3-201ENST00000308330 RSF1Q96T23 1441 aaPredicted RBP21.14■□□□□ 0.97
LEMD3-201ENST00000308330 BAZ1BQ9UIG0 1483 aaKnown RBP21.12■□□□□ 0.97
LEMD3-201ENST00000308330 FKBP8Q14318 412 aa21.06■□□□□ 0.96
LEMD3-201ENST00000308330 ANO8Q9HCE9 1232 aaPredicted RBP21.05■□□□□ 0.96
LEMD3-201ENST00000308330 ZNF326Q5BKZ1 582 aaKnown RBP21.02■□□□□ 0.96
LEMD3-201ENST00000308330 ESF1Q9H501 851 aaKnown RBP20.99■□□□□ 0.95
LEMD3-201ENST00000308330 ERCC6Q03468 1493 aa20.98■□□□□ 0.95
LEMD3-201ENST00000308330 CECR2Q9BXF3 1484 aa20.97■□□□□ 0.95
LEMD3-201ENST00000308330 DCAF1Q9Y4B6 1507 aa20.95■□□□□ 0.94
LEMD3-201ENST00000308330 PLPPR3Q6T4P5 718 aa20.93■□□□□ 0.94
LEMD3-201ENST00000308330 ZBTB47Q9UFB7 747 aaPredicted RBP20.9■□□□□ 0.94
LEMD3-201ENST00000308330 VSIG10Q8N0Z9 540 aa20.87■□□□□ 0.93
LEMD3-201ENST00000308330 BAZ1AQ9NRL2 1556 aaPredicted RBP20.87■□□□□ 0.93
LEMD3-201ENST00000308330 TNNT2P45379 298 aaPredicted RBP20.83■□□□□ 0.93
LEMD3-201ENST00000308330 A0A0U1RQG5 324 aaPredicted RBP20.82■□□□□ 0.92
LEMD3-201ENST00000308330 WRNQ14191 1432 aaPredicted RBP eCLIP20.82■□□□□ 0.922e-6■■■■■ 52.2
LEMD3-201ENST00000308330 KCNH8Q96L42 1107 aa20.81■□□□□ 0.92
LEMD3-201ENST00000308330 TSHZ2Q9NRE2 1034 aa20.79■□□□□ 0.92
LEMD3-201ENST00000308330 NEFMP07197 916 aa20.79■□□□□ 0.92
LEMD3-201ENST00000308330 SUPT16HQ9Y5B9 1047 aaKnown RBP20.78■□□□□ 0.92
LEMD3-201ENST00000308330 UBE2Q2Q8WVN8 375 aa20.77■□□□□ 0.92
LEMD3-201ENST00000308330 CHGAP10645 457 aaKnown RBP20.76■□□□□ 0.91
LEMD3-201ENST00000308330 STAG3Q9UJ98 1225 aa20.75■□□□□ 0.91
LEMD3-201ENST00000308330 NAP1L5Q96NT1 182 aaPredicted RBP20.74■□□□□ 0.91
LEMD3-201ENST00000308330 CHIC2Q9UKJ5 165 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms