RNA–Protein interactions for RNA: ENST00000326470.9

SSH1-201, Transcript of slingshot protein phosphatase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SSH1, Length 2,432 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH1-201ENST00000326470 NISCHQ9Y2I1 1504 aa33.38■■■□□ 2.93
SSH1-201ENST00000326470 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
SSH1-201ENST00000326470 SHROOM4Q9ULL8 1493 aa28.76■■■□□ 2.19
SSH1-201ENST00000326470 SUPT5HO00267 1087 aaKnown RBP28.45■■■□□ 2.14
SSH1-201ENST00000326470 ZCCHC6Q5VYS8 1495 aaKnown RBP28.34■■■□□ 2.13
SSH1-201ENST00000326470 HRCP23327 699 aa27.96■■■□□ 2.07
SSH1-201ENST00000326470 CHIC1Q5VXU3 224 aa27.95■■■□□ 2.06
SSH1-201ENST00000326470 MYO15BQ96JP2 1530 aa27.95■■■□□ 2.06
SSH1-201ENST00000326470 PCGF6Q9BYE7 350 aa27.56■■■□□ 2
SSH1-201ENST00000326470 DCAF1Q9Y4B6 1507 aa27.5■■□□□ 1.99
SSH1-201ENST00000326470 DCAF8L2P0C7V8 631 aa27.47■■□□□ 1.99
SSH1-201ENST00000326470 PPARGC1BQ86YN6 1023 aaKnown RBP27.22■■□□□ 1.95
SSH1-201ENST00000326470 LOC105371045A0A1W2PR82 267 aa27.11■■□□□ 1.93
SSH1-201ENST00000326470 ABCC9O60706 1549 aa27.07■■□□□ 1.92
SSH1-201ENST00000326470 TRIM26Q12899 539 aaPredicted RBP26.96■■□□□ 1.91
SSH1-201ENST00000326470 NACADO15069 1562 aa26.77■■□□□ 1.88
SSH1-201ENST00000326470 ZEB1P37275 1124 aaPredicted RBP26.63■■□□□ 1.85
SSH1-201ENST00000326470 RSF1Q96T23 1441 aaPredicted RBP26.61■■□□□ 1.85
SSH1-201ENST00000326470 SCRIBQ14160 1630 aa26.54■■□□□ 1.84
SSH1-201ENST00000326470 TRIM41Q8WV44 630 aa26.49■■□□□ 1.83
SSH1-201ENST00000326470 RB1CC1Q8TDY2 1594 aa26.45■■□□□ 1.83
SSH1-201ENST00000326470 FAM9AQ8IZU1 332 aaPredicted RBP26.26■■□□□ 1.79
SSH1-201ENST00000326470 PELP1Q8IZL8 1130 aaKnown RBP26.17■■□□□ 1.78
SSH1-201ENST00000326470 SCAF1Q9H7N4 1312 aaKnown RBP26.04■■□□□ 1.76
SSH1-201ENST00000326470 CECR2Q9BXF3 1484 aa25.99■■□□□ 1.75
SSH1-201ENST00000326470 EHMT2Q96KQ7 1210 aa25.97■■□□□ 1.75
SSH1-201ENST00000326470 MROH2BQ7Z745 1585 aa25.96■■□□□ 1.75
SSH1-201ENST00000326470 UNC13AQ9UPW8 1703 aa25.84■■□□□ 1.73
SSH1-201ENST00000326470 WIZO95785 1651 aa25.83■■□□□ 1.73
SSH1-201ENST00000326470 BAZ1AQ9NRL2 1556 aaPredicted RBP25.74■■□□□ 1.71
SSH1-201ENST00000326470 EIF4G1Q04637 1599 aaKnown RBP25.74■■□□□ 1.71
SSH1-201ENST00000326470 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.74■■□□□ 1.71
SSH1-201ENST00000326470 CCER1Q8TC90 406 aaPredicted RBP25.72■■□□□ 1.71
SSH1-201ENST00000326470 ACIN1Q9UKV3 1341 aaKnown RBP25.65■■□□□ 1.7
SSH1-201ENST00000326470 PABPN1Q86U42 306 aaKnown RBP eCLIP25.65■■□□□ 1.7
SSH1-201ENST00000326470 WRNQ14191 1432 aaPredicted RBP eCLIP25.6■■□□□ 1.699e-6■■■■■ 50.1
SSH1-201ENST00000326470 BICRAQ9NZM4 1560 aa25.58■■□□□ 1.69
SSH1-201ENST00000326470 NEUROD1Q13562 356 aa25.54■■□□□ 1.68
SSH1-201ENST00000326470 DIEXFQ68CQ4 756 aaKnown RBP25.51■■□□□ 1.67
SSH1-201ENST00000326470 SMARCA4P51532 1647 aa25.47■■□□□ 1.67
SSH1-201ENST00000326470 TOP2AP11388 1531 aaKnown RBP25.46■■□□□ 1.67
SSH1-201ENST00000326470 CCDC88BA6NC98 1476 aa25.46■■□□□ 1.67
SSH1-201ENST00000326470 CEP162Q5TB80 1403 aa25.44■■□□□ 1.66
SSH1-201ENST00000326470 ABCC8Q09428 1581 aa25.43■■□□□ 1.66
SSH1-201ENST00000326470 CENPBP07199 599 aaPredicted RBP25.43■■□□□ 1.66
SSH1-201ENST00000326470 TNIKQ9UKE5 1360 aa25.4■■□□□ 1.66
SSH1-201ENST00000326470 GTF3C3Q9Y5Q9 886 aa25.34■■□□□ 1.65
SSH1-201ENST00000326470 SMARCA2P51531 1590 aa25.33■■□□□ 1.65
SSH1-201ENST00000326470 SOGA1O94964 1423 aa25.31■■□□□ 1.64
SSH1-201ENST00000326470 EEA1Q15075 1411 aa25.31■■□□□ 1.64
SSH1-201ENST00000326470 TTBK1Q5TCY1 1321 aaPredicted RBP25.29■■□□□ 1.64
SSH1-201ENST00000326470 CSRNP3Q8WYN3 585 aa25.24■■□□□ 1.63
SSH1-201ENST00000326470 ZNF316A6NFI3 1004 aaPredicted RBP25.21■■□□□ 1.63
SSH1-201ENST00000326470 UBTFP17480 764 aaKnown RBP25.16■■□□□ 1.62
SSH1-201ENST00000326470 RUSC2Q8N2Y8 1516 aa25.15■■□□□ 1.62
SSH1-201ENST00000326470 GOLGA3Q08378 1498 aa25.14■■□□□ 1.62
SSH1-201ENST00000326470 PEG3Q9GZU2 1588 aa25.14■■□□□ 1.62
SSH1-201ENST00000326470 MYT1Q01538 1121 aa25.01■■□□□ 1.59
SSH1-201ENST00000326470 ATAD2BQ9ULI0 1458 aa24.97■■□□□ 1.59
SSH1-201ENST00000326470 CEP164Q9UPV0 1460 aa24.95■■□□□ 1.58
SSH1-201ENST00000326470 KIF21BO75037 1637 aa24.92■■□□□ 1.58
SSH1-201ENST00000326470 MIER1Q8N108 512 aa24.88■■□□□ 1.57
SSH1-201ENST00000326470 HNRNPUL2Q1KMD3 747 aaKnown RBP24.88■■□□□ 1.57
SSH1-201ENST00000326470 YTHDC1Q96MU7 727 aaKnown RBP24.87■■□□□ 1.57
SSH1-201ENST00000326470 BAZ1BQ9UIG0 1483 aaKnown RBP24.87■■□□□ 1.57
SSH1-201ENST00000326470 CLIP1P30622 1438 aa24.87■■□□□ 1.57
SSH1-201ENST00000326470 VPS8Q8N3P4 1428 aa24.84■■□□□ 1.57
SSH1-201ENST00000326470 SYNJ1O43426 1573 aa24.82■■□□□ 1.56
SSH1-201ENST00000326470 APLP2Q06481 763 aa24.72■■□□□ 1.55
SSH1-201ENST00000326470 NCAPD3P42695 1498 aa24.71■■□□□ 1.55
SSH1-201ENST00000326470 HMGXB3Q12766 1538 aa24.69■■□□□ 1.54
SSH1-201ENST00000326470 RAPGEF2Q9Y4G8 1499 aa24.68■■□□□ 1.54
SSH1-201ENST00000326470 CLSPNQ9HAW4 1339 aa24.63■■□□□ 1.53
SSH1-201ENST00000326470 DHX57Q6P158 1386 aaKnown RBP24.52■■□□□ 1.52
SSH1-201ENST00000326470 TOP2BQ02880 1626 aa24.49■■□□□ 1.51
SSH1-201ENST00000326470 RANGAP1P46060 587 aaPredicted RBP24.46■■□□□ 1.51
SSH1-201ENST00000326470 ERICH3Q5RHP9 1530 aa24.45■■□□□ 1.5
SSH1-201ENST00000326470 ARAP1Q96P48 1450 aa24.41■■□□□ 1.5
SSH1-201ENST00000326470 PRXQ9BXM0 1461 aa24.41■■□□□ 1.5
SSH1-201ENST00000326470 BIVM-ERCC5R4GMW8 1640 aa24.38■■□□□ 1.49
SSH1-201ENST00000326470 CC2D2AQ9P2K1 1620 aa24.37■■□□□ 1.49
SSH1-201ENST00000326470 RRBP1Q9P2E9 1410 aaKnown RBP24.35■■□□□ 1.49
SSH1-201ENST00000326470 KANK4Q5T7N3 995 aaPredicted RBP24.34■■□□□ 1.49
SSH1-201ENST00000326470 SUPT16HQ9Y5B9 1047 aaKnown RBP24.32■■□□□ 1.48
SSH1-201ENST00000326470 CUX2O14529 1486 aa24.31■■□□□ 1.48
SSH1-201ENST00000326470 CFTRP13569 1480 aa24.26■■□□□ 1.47
SSH1-201ENST00000326470 DNAJC5BQ9UF47 199 aa24.22■■□□□ 1.47
SSH1-201ENST00000326470 CCNB3Q8WWL7 1395 aa24.2■■□□□ 1.46
SSH1-201ENST00000326470 KIF27Q86VH2 1401 aa24.17■■□□□ 1.46
SSH1-201ENST00000326470 CUX1P39880 1505 aa24.14■■□□□ 1.45
SSH1-201ENST00000326470 ARHGAP35Q9NRY4 1499 aa24.12■■□□□ 1.45
SSH1-201ENST00000326470 CADPSQ9ULU8 1353 aa24.12■■□□□ 1.45
SSH1-201ENST00000326470 PRDM2Q13029 1718 aa24.11■■□□□ 1.45
SSH1-201ENST00000326470 TSHZ2Q9NRE2 1034 aa24.04■■□□□ 1.44
SSH1-201ENST00000326470 RAB3GAP2Q9H2M9 1393 aa24.04■■□□□ 1.44
SSH1-201ENST00000326470 MAPKBP1O60336 1514 aa24.03■■□□□ 1.44
SSH1-201ENST00000326470 ITGAEP38570 1179 aa24.01■■□□□ 1.43
SSH1-201ENST00000326470 MAP3K1Q13233 1512 aa23.99■■□□□ 1.43
SSH1-201ENST00000326470 KCNH8Q96L42 1107 aa23.96■■□□□ 1.43
SSH1-201ENST00000326470 TIAM1Q13009 1591 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms