RNA–Protein interactions for RNA: ENST00000426878.2

LMCD1-204, Transcript of LIM and cysteine rich domains 1, humanhuman

TSL 2 BASIC

Gene LMCD1, Length 1,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-204ENST00000426878 NISCHQ9Y2I1 1504 aa42.07■■■■■ 4.33
LMCD1-204ENST00000426878 CCDC180Q9P1Z9 1646 aa37.45■■■■□ 3.59
LMCD1-204ENST00000426878 ABCC9O60706 1549 aa36.66■■■■□ 3.46
LMCD1-204ENST00000426878 RB1CC1Q8TDY2 1594 aa35.28■■■■□ 3.24
LMCD1-204ENST00000426878 NACADO15069 1562 aa35.25■■■■□ 3.23
LMCD1-204ENST00000426878 DCAF8L2P0C7V8 631 aa35.1■■■■□ 3.21
LMCD1-204ENST00000426878 MYO15BQ96JP2 1530 aa35.06■■■■□ 3.2
LMCD1-204ENST00000426878 ZCCHC6Q5VYS8 1495 aaKnown RBP35.03■■■■□ 3.2
LMCD1-204ENST00000426878 DCAF1Q9Y4B6 1507 aa34.86■■■■□ 3.17
LMCD1-204ENST00000426878 UNC13AQ9UPW8 1703 aa34.44■■■■□ 3.1
LMCD1-204ENST00000426878 PABPN1Q86U42 306 aaKnown RBP eCLIP34.25■■■■□ 3.07
LMCD1-204ENST00000426878 BICRAQ9NZM4 1560 aa34.22■■■■□ 3.07
LMCD1-204ENST00000426878 SCRIBQ14160 1630 aa34.08■■■■□ 3.05
LMCD1-204ENST00000426878 SHROOM4Q9ULL8 1493 aa33.91■■■■□ 3.02
LMCD1-204ENST00000426878 DNAJC5BQ9UF47 199 aa33.78■■■■□ 3
LMCD1-204ENST00000426878 EIF4G1Q04637 1599 aaKnown RBP33.31■■■□□ 2.92
LMCD1-204ENST00000426878 CC2D2AQ9P2K1 1620 aa33.18■■■□□ 2.9
LMCD1-204ENST00000426878 CECR2Q9BXF3 1484 aa32.99■■■□□ 2.87
LMCD1-204ENST00000426878 SMARCA4P51532 1647 aa32.64■■■□□ 2.82
LMCD1-204ENST00000426878 BAZ1AQ9NRL2 1556 aaPredicted RBP32.62■■■□□ 2.81
LMCD1-204ENST00000426878 NCAPD3P42695 1498 aa32.54■■■□□ 2.8
LMCD1-204ENST00000426878 ATAD2BQ9ULI0 1458 aa32.51■■■□□ 2.8
LMCD1-204ENST00000426878 SMARCA2P51531 1590 aa32.47■■■□□ 2.79
LMCD1-204ENST00000426878 MROH2BQ7Z745 1585 aa32.4■■■□□ 2.78
LMCD1-204ENST00000426878 PEG3Q9GZU2 1588 aa32.38■■■□□ 2.77
LMCD1-204ENST00000426878 HMGXB3Q12766 1538 aa32.35■■■□□ 2.77
LMCD1-204ENST00000426878 BAZ1BQ9UIG0 1483 aaKnown RBP32.21■■■□□ 2.75
LMCD1-204ENST00000426878 RSF1Q96T23 1441 aaPredicted RBP32.02■■■□□ 2.72
LMCD1-204ENST00000426878 WIZO95785 1651 aa32.02■■■□□ 2.72
LMCD1-204ENST00000426878 NESP48681 1621 aa31.7■■■□□ 2.67
LMCD1-204ENST00000426878 TOP2AP11388 1531 aaKnown RBP31.7■■■□□ 2.67
LMCD1-204ENST00000426878 LAMC3Q9Y6N6 1575 aa31.67■■■□□ 2.66
LMCD1-204ENST00000426878 ERCC6Q03468 1493 aa31.62■■■□□ 2.65
LMCD1-204ENST00000426878 CADPSQ9ULU8 1353 aa31.57■■■□□ 2.64
LMCD1-204ENST00000426878 PDS5BQ9NTI5 1447 aa31.47■■■□□ 2.63
LMCD1-204ENST00000426878 CUX2O14529 1486 aa31.38■■■□□ 2.61
LMCD1-204ENST00000426878 CFTRP13569 1480 aa31.37■■■□□ 2.61
LMCD1-204ENST00000426878 CCDC88BA6NC98 1476 aa31.34■■■□□ 2.61
LMCD1-204ENST00000426878 KIF21AQ7Z4S6 1674 aa31.32■■■□□ 2.6
LMCD1-204ENST00000426878 THOC2Q8NI27 1593 aaKnown RBP31.27■■■□□ 2.6
LMCD1-204ENST00000426878 FANCD2Q9BXW9 1451 aa31.18■■■□□ 2.58
LMCD1-204ENST00000426878 CEP164Q9UPV0 1460 aa31.15■■■□□ 2.58
LMCD1-204ENST00000426878 MRC2Q9UBG0 1479 aa31.12■■■□□ 2.57
LMCD1-204ENST00000426878 PRDM2Q13029 1718 aa31.08■■■□□ 2.57
LMCD1-204ENST00000426878 SUPT5HO00267 1087 aaKnown RBP31.06■■■□□ 2.56
LMCD1-204ENST00000426878 WDR62O43379 1518 aa31.04■■■□□ 2.56
LMCD1-204ENST00000426878 URB2Q14146 1524 aaKnown RBP30.86■■■□□ 2.53
LMCD1-204ENST00000426878 ABCC8Q09428 1581 aa30.71■■■□□ 2.51
LMCD1-204ENST00000426878 TOPBP1Q92547 1522 aa30.66■■■□□ 2.5
LMCD1-204ENST00000426878 DNMBPQ6XZF7 1577 aa30.62■■■□□ 2.49
LMCD1-204ENST00000426878 DNAJC5Q9H3Z4 198 aa30.53■■■□□ 2.48
LMCD1-204ENST00000426878 IFT140Q96RY7 1462 aa30.52■■■□□ 2.48
LMCD1-204ENST00000426878 POLA1P09884 1462 aaPredicted RBP30.41■■■□□ 2.46
LMCD1-204ENST00000426878 CUX1P39880 1505 aa30.39■■■□□ 2.46
LMCD1-204ENST00000426878 TARBP1Q13395 1621 aaKnown RBP30.36■■■□□ 2.45
LMCD1-204ENST00000426878 ZNF608Q9ULD9 1512 aaPredicted RBP30.35■■■□□ 2.45
LMCD1-204ENST00000426878 FGD5Q6ZNL6 1462 aa30.3■■■□□ 2.44
LMCD1-204ENST00000426878 SOGA1O94964 1423 aa30.29■■■□□ 2.44
LMCD1-204ENST00000426878 RAD54L2Q9Y4B4 1467 aa30.25■■■□□ 2.43
LMCD1-204ENST00000426878 EIF4G3O43432 1585 aaKnown RBP30.22■■■□□ 2.43
LMCD1-204ENST00000426878 WRNQ14191 1432 aaPredicted RBP eCLIP30.17■■■□□ 2.42
LMCD1-204ENST00000426878 AQRO60306 1485 aaKnown RBP eCLIP30.17■■■□□ 2.42
LMCD1-204ENST00000426878 WDR97A6NE52 1622 aa30.14■■■□□ 2.42
LMCD1-204ENST00000426878 TOP2BQ02880 1626 aa30.12■■■□□ 2.41
LMCD1-204ENST00000426878 BIVM-ERCC5R4GMW8 1640 aa30.12■■■□□ 2.41
LMCD1-204ENST00000426878 TDRD9Q8NDG6 1382 aaKnown RBP30.1■■■□□ 2.41
LMCD1-204ENST00000426878 SYNJ1O43426 1573 aa30.08■■■□□ 2.41
LMCD1-204ENST00000426878 OSCARQ8IYS5 282 aa30.06■■■□□ 2.4
LMCD1-204ENST00000426878 ABCA10Q8WWZ4 1543 aa30.04■■■□□ 2.4
LMCD1-204ENST00000426878 GRIN2BQ13224 1484 aa29.95■■■□□ 2.38
LMCD1-204ENST00000426878 GAPVD1Q14C86 1478 aa29.93■■■□□ 2.38
LMCD1-204ENST00000426878 ABCA5Q8WWZ7 1642 aa29.91■■■□□ 2.38
LMCD1-204ENST00000426878 SNAPC4Q5SXM2 1469 aa29.88■■■□□ 2.37
LMCD1-204ENST00000426878 MAGI1Q96QZ7 1491 aaPredicted RBP29.88■■■□□ 2.37
LMCD1-204ENST00000426878 CHD1O14646 1710 aa29.84■■■□□ 2.37
LMCD1-204ENST00000426878 PBRM1Q86U86 1689 aa29.83■■■□□ 2.37
LMCD1-204ENST00000426878 FBLN2P98095 1184 aa29.79■■■□□ 2.36
LMCD1-204ENST00000426878 SYNJ2O15056 1496 aa29.76■■■□□ 2.35
LMCD1-204ENST00000426878 CHMP7Q8WUX9 453 aaPredicted RBP29.75■■■□□ 2.35
LMCD1-204ENST00000426878 ERICH3Q5RHP9 1530 aa29.68■■■□□ 2.34
LMCD1-204ENST00000426878 ADAMTS12P58397 1594 aa29.61■■■□□ 2.33
LMCD1-204ENST00000426878 FHAD1B1AJZ9 1412 aa29.6■■■□□ 2.33
LMCD1-204ENST00000426878 KIF27Q86VH2 1401 aa29.56■■■□□ 2.32
LMCD1-204ENST00000426878 CLASP1Q7Z460 1538 aa29.56■■■□□ 2.32
LMCD1-204ENST00000426878 GRIN2AQ12879 1464 aa29.54■■■□□ 2.32
LMCD1-204ENST00000426878 RIMBP3CA6NJZ7 1639 aa29.53■■■□□ 2.32
LMCD1-204ENST00000426878 RIMBP3BA6NNM3 1639 aa29.53■■■□□ 2.32
LMCD1-204ENST00000426878 RIMBP3Q9UFD9 1639 aa29.53■■■□□ 2.32
LMCD1-204ENST00000426878 ARHGEF11O15085 1522 aa29.53■■■□□ 2.32
LMCD1-204ENST00000426878 IGF1RP08069 1367 aa29.48■■■□□ 2.31
LMCD1-204ENST00000426878 NUP160Q12769 1436 aa29.45■■■□□ 2.31
LMCD1-204ENST00000426878 CEP170Q5SW79 1584 aa29.39■■■□□ 2.29
LMCD1-204ENST00000426878 TRIM41Q8WV44 630 aa29.38■■■□□ 2.29
LMCD1-204ENST00000426878 CUL7Q14999 1698 aa29.37■■■□□ 2.29
LMCD1-204ENST00000426878 ARAP1Q96P48 1450 aa29.3■■■□□ 2.28
LMCD1-204ENST00000426878 CARMIL1Q5VZK9 1371 aa29.28■■■□□ 2.28
LMCD1-204ENST00000426878 CYB5RLQ6IPT4 315 aa29.26■■■□□ 2.27
LMCD1-204ENST00000426878 RUSC2Q8N2Y8 1516 aa29.23■■■□□ 2.27
LMCD1-204ENST00000426878 SHROOM2Q13796 1616 aa29.23■■■□□ 2.27
LMCD1-204ENST00000426878 KIAA0586Q9BVV6 1533 aa29.14■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms