RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1-210ENST00000449058 NISCHQ9Y2I1 1504 aa35.78■■■■□ 3.32
TOM1-210ENST00000449058 CCDC180Q9P1Z9 1646 aa30.63■■■□□ 2.49
TOM1-210ENST00000449058 ZCCHC6Q5VYS8 1495 aaKnown RBP30.26■■■□□ 2.43
TOM1-210ENST00000449058 SHROOM4Q9ULL8 1493 aa30.08■■■□□ 2.41
TOM1-210ENST00000449058 DCAF1Q9Y4B6 1507 aa29.5■■■□□ 2.31
TOM1-210ENST00000449058 SUPT5HO00267 1087 aaKnown RBP29.43■■■□□ 2.3
TOM1-210ENST00000449058 DCAF8L2P0C7V8 631 aa29.31■■■□□ 2.28
TOM1-210ENST00000449058 MYO15BQ96JP2 1530 aa28.72■■■□□ 2.19
TOM1-210ENST00000449058 CHIC1Q5VXU3 224 aa28.7■■■□□ 2.18
TOM1-210ENST00000449058 ABCC9O60706 1549 aa28.55■■■□□ 2.16
TOM1-210ENST00000449058 SCRIBQ14160 1630 aa28.46■■■□□ 2.15
TOM1-210ENST00000449058 NACADO15069 1562 aa28.28■■■□□ 2.12
TOM1-210ENST00000449058 RSF1Q96T23 1441 aaPredicted RBP28.2■■■□□ 2.1
TOM1-210ENST00000449058 RB1CC1Q8TDY2 1594 aa27.94■■■□□ 2.06
TOM1-210ENST00000449058 CECR2Q9BXF3 1484 aa27.81■■■□□ 2.04
TOM1-210ENST00000449058 MROH2BQ7Z745 1585 aa27.75■■■□□ 2.03
TOM1-210ENST00000449058 LOC105371045A0A1W2PR82 267 aa27.72■■■□□ 2.03
TOM1-210ENST00000449058 WIZO95785 1651 aa27.6■■■□□ 2.01
TOM1-210ENST00000449058 HRCP23327 699 aa27.58■■■□□ 2.01
TOM1-210ENST00000449058 PCGF6Q9BYE7 350 aa27.54■■■□□ 2
TOM1-210ENST00000449058 TRIM41Q8WV44 630 aa27.52■■■□□ 2
TOM1-210ENST00000449058 BAZ1AQ9NRL2 1556 aaPredicted RBP27.51■■□□□ 1.99
TOM1-210ENST00000449058 UNC13AQ9UPW8 1703 aa27.44■■□□□ 1.98
TOM1-210ENST00000449058 EIF4G1Q04637 1599 aaKnown RBP27.3■■□□□ 1.96
TOM1-210ENST00000449058 SMARCA4P51532 1647 aa27.29■■□□□ 1.96
TOM1-210ENST00000449058 TOP2AP11388 1531 aaKnown RBP27.24■■□□□ 1.95
TOM1-210ENST00000449058 TRIM26Q12899 539 aaPredicted RBP27.19■■□□□ 1.94
TOM1-210ENST00000449058 FAM9AQ8IZU1 332 aaPredicted RBP27.15■■□□□ 1.94
TOM1-210ENST00000449058 SMARCA2P51531 1590 aa27.07■■□□□ 1.92
TOM1-210ENST00000449058 BICRAQ9NZM4 1560 aa27.06■■□□□ 1.92
TOM1-210ENST00000449058 CCDC88BA6NC98 1476 aa27.04■■□□□ 1.92
TOM1-210ENST00000449058 PPARGC1BQ86YN6 1023 aaKnown RBP26.87■■□□□ 1.89
TOM1-210ENST00000449058 ABCC8Q09428 1581 aa26.87■■□□□ 1.89
TOM1-210ENST00000449058 PEG3Q9GZU2 1588 aa26.87■■□□□ 1.89
TOM1-210ENST00000449058 PABPN1Q86U42 306 aaKnown RBP eCLIP26.82■■□□□ 1.88
TOM1-210ENST00000449058 EHMT2Q96KQ7 1210 aa26.8■■□□□ 1.88
TOM1-210ENST00000449058 ZEB1P37275 1124 aaPredicted RBP26.58■■□□□ 1.85
TOM1-210ENST00000449058 EEA1Q15075 1411 aa26.58■■□□□ 1.85
TOM1-210ENST00000449058 SOGA1O94964 1423 aa26.57■■□□□ 1.84
TOM1-210ENST00000449058 ATAD2BQ9ULI0 1458 aa26.57■■□□□ 1.84
TOM1-210ENST00000449058 WRNQ14191 1432 aaPredicted RBP eCLIP26.48■■□□□ 1.83
TOM1-210ENST00000449058 BAZ1BQ9UIG0 1483 aaKnown RBP26.47■■□□□ 1.83
TOM1-210ENST00000449058 TNIKQ9UKE5 1360 aa26.45■■□□□ 1.82
TOM1-210ENST00000449058 RUSC2Q8N2Y8 1516 aa26.45■■□□□ 1.82
TOM1-210ENST00000449058 CEP162Q5TB80 1403 aa26.43■■□□□ 1.82
TOM1-210ENST00000449058 CSRNP3Q8WYN3 585 aa26.41■■□□□ 1.82
TOM1-210ENST00000449058 SYNJ1O43426 1573 aa26.39■■□□□ 1.82
TOM1-210ENST00000449058 GOLGA3Q08378 1498 aa26.32■■□□□ 1.8
TOM1-210ENST00000449058 KIF21BO75037 1637 aa26.25■■□□□ 1.79
TOM1-210ENST00000449058 CEP164Q9UPV0 1460 aa26.2■■□□□ 1.78
TOM1-210ENST00000449058 UBTFP17480 764 aaKnown RBP26.19■■□□□ 1.78
TOM1-210ENST00000449058 HMGXB3Q12766 1538 aa26.16■■□□□ 1.78
TOM1-210ENST00000449058 TOP2BQ02880 1626 aa26.14■■□□□ 1.78
TOM1-210ENST00000449058 NCAPD3P42695 1498 aa26.13■■□□□ 1.77
TOM1-210ENST00000449058 BIVM-ERCC5R4GMW8 1640 aa26.09■■□□□ 1.77
TOM1-210ENST00000449058 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.01■■□□□ 1.75
TOM1-210ENST00000449058 RAPGEF2Q9Y4G8 1499 aa25.96■■□□□ 1.75
TOM1-210ENST00000449058 CLIP1P30622 1438 aa25.96■■□□□ 1.75
TOM1-210ENST00000449058 CCER1Q8TC90 406 aaPredicted RBP25.96■■□□□ 1.75
TOM1-210ENST00000449058 TTBK1Q5TCY1 1321 aaPredicted RBP25.93■■□□□ 1.74
TOM1-210ENST00000449058 VPS8Q8N3P4 1428 aa25.88■■□□□ 1.73
TOM1-210ENST00000449058 CFTRP13569 1480 aa25.86■■□□□ 1.73
TOM1-210ENST00000449058 CUX1P39880 1505 aa25.86■■□□□ 1.73
TOM1-210ENST00000449058 ERICH3Q5RHP9 1530 aa25.85■■□□□ 1.73
TOM1-210ENST00000449058 PRXQ9BXM0 1461 aa25.81■■□□□ 1.72
TOM1-210ENST00000449058 PRDM2Q13029 1718 aa25.8■■□□□ 1.72
TOM1-210ENST00000449058 KIF27Q86VH2 1401 aa25.68■■□□□ 1.7
TOM1-210ENST00000449058 ARAP1Q96P48 1450 aa25.61■■□□□ 1.69
TOM1-210ENST00000449058 APLP2Q06481 763 aa25.6■■□□□ 1.69
TOM1-210ENST00000449058 RANGAP1P46060 587 aaPredicted RBP25.55■■□□□ 1.68
TOM1-210ENST00000449058 CADPSQ9ULU8 1353 aa25.55■■□□□ 1.68
TOM1-210ENST00000449058 HNRNPUL2Q1KMD3 747 aaKnown RBP25.49■■□□□ 1.67
TOM1-210ENST00000449058 CC2D2AQ9P2K1 1620 aa25.49■■□□□ 1.67
TOM1-210ENST00000449058 CUX2O14529 1486 aa25.43■■□□□ 1.66
TOM1-210ENST00000449058 ARHGAP35Q9NRY4 1499 aa25.4■■□□□ 1.66
TOM1-210ENST00000449058 DIEXFQ68CQ4 756 aaKnown RBP25.4■■□□□ 1.66
TOM1-210ENST00000449058 IGF1RP08069 1367 aa25.4■■□□□ 1.66
TOM1-210ENST00000449058 FGD5Q6ZNL6 1462 aa25.39■■□□□ 1.66
TOM1-210ENST00000449058 KANK4Q5T7N3 995 aaPredicted RBP25.32■■□□□ 1.64
TOM1-210ENST00000449058 ZNF316A6NFI3 1004 aaPredicted RBP25.3■■□□□ 1.64
TOM1-210ENST00000449058 FANCD2Q9BXW9 1451 aa25.3■■□□□ 1.64
TOM1-210ENST00000449058 RRBP1Q9P2E9 1410 aaKnown RBP25.28■■□□□ 1.64
TOM1-210ENST00000449058 CARMIL1Q5VZK9 1371 aa25.27■■□□□ 1.64
TOM1-210ENST00000449058 SCAF1Q9H7N4 1312 aaKnown RBP25.25■■□□□ 1.63
TOM1-210ENST00000449058 DNMBPQ6XZF7 1577 aa25.24■■□□□ 1.63
TOM1-210ENST00000449058 MAP3K1Q13233 1512 aa25.2■■□□□ 1.62
TOM1-210ENST00000449058 CLSPNQ9HAW4 1339 aa25.18■■□□□ 1.62
TOM1-210ENST00000449058 ABCA10Q8WWZ4 1543 aa25.16■■□□□ 1.62
TOM1-210ENST00000449058 TIAM1Q13009 1591 aa25.15■■□□□ 1.62
TOM1-210ENST00000449058 TOPBP1Q92547 1522 aa25.15■■□□□ 1.62
TOM1-210ENST00000449058 DHX57Q6P158 1386 aaKnown RBP25.14■■□□□ 1.62
TOM1-210ENST00000449058 ACIN1Q9UKV3 1341 aaKnown RBP25.12■■□□□ 1.61
TOM1-210ENST00000449058 POLA1P09884 1462 aaPredicted RBP25.11■■□□□ 1.61
TOM1-210ENST00000449058 CCNB3Q8WWL7 1395 aa25.11■■□□□ 1.61
TOM1-210ENST00000449058 NESP48681 1621 aa25.1■■□□□ 1.61
TOM1-210ENST00000449058 RAD54L2Q9Y4B4 1467 aa25.09■■□□□ 1.61
TOM1-210ENST00000449058 CUL7Q14999 1698 aa25.06■■□□□ 1.6
TOM1-210ENST00000449058 LAMC3Q9Y6N6 1575 aa25.05■■□□□ 1.6
TOM1-210ENST00000449058 NEUROD1Q13562 356 aa25.05■■□□□ 1.6
TOM1-210ENST00000449058 CFAP43Q8NDM7 1665 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms