Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 CXXC1-214ENST00000590901 2562 ntTSL 216.88■□□□□ 0.293e-6■■■■□ 25.7
DDX55Q8NHQ9 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.31e-11■■■■□ 25.7
DDX55Q8NHQ9 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC15.79■□□□□ 0.122e-6■■■■□ 25.7
DDX55Q8NHQ9 COPS5-206ENST00000518747 676 ntTSL 315.14■□□□□ 0.012e-6■■■■□ 25.7
DDX55Q8NHQ9 COPS5-205ENST00000518374 1451 ntTSL 211.63□□□□□ -0.552e-6■■■■□ 25.7
DDX55Q8NHQ9 COPS5-213ENST00000523890 1086 ntTSL 310.27□□□□□ -0.772e-6■■■■□ 25.7
DDX55Q8NHQ9 COPS5-201ENST00000357849 1480 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.772e-6■■■■□ 25.7
DDX55Q8NHQ9 COPS5-211ENST00000521509 3826 ntTSL 59.44□□□□□ -0.92e-6■■■■□ 25.7
DDX55Q8NHQ9 COPS5-210ENST00000521386 5691 ntTSL 1 (best)8.13□□□□□ -1.112e-6■■■■□ 25.7
DDX55Q8NHQ9 COPS5-212ENST00000523086 717 ntTSL 25.61□□□□□ -1.512e-6■■■■□ 25.7
DDX55Q8NHQ9 PPP1R42-202ENST00000517834 610 ntTSL 45.02□□□□□ -1.612e-6■■■■□ 25.7
DDX55Q8NHQ9 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC24.42■■□□□ 1.51e-6■■■■□ 25.6
DDX55Q8NHQ9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.991e-6■■■■□ 25.6
DDX55Q8NHQ9 GLYCTK-208ENST00000486393 2019 ntTSL 1 (best)20.12■□□□□ 0.811e-6■■■■□ 25.6
DDX55Q8NHQ9 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.57■□□□□ 0.561e-6■■■■□ 25.6
DDX55Q8NHQ9 GLYCTK-209ENST00000489173 2083 ntTSL 518.04■□□□□ 0.481e-6■■■■□ 25.6
DDX55Q8NHQ9 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC17.32■□□□□ 0.361e-6■■■■□ 25.6
DDX55Q8NHQ9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.491e-29■■■■□ 25.6
DDX55Q8NHQ9 TSR3-202ENST00000566296 649 ntTSL 320.69■□□□□ 0.91e-29■■■■□ 25.6
DDX55Q8NHQ9 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.124e-11■■■■□ 25.5
DDX55Q8NHQ9 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.034e-11■■■■□ 25.5
DDX55Q8NHQ9 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.81■■■□□ 2.841e-7■■■■□ 25.5
DDX55Q8NHQ9 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.391e-7■■■■□ 25.5
DDX55Q8NHQ9 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.8■■■□□ 2.21e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC25.95■■□□□ 1.751e-9■■■■□ 25.5
DDX55Q8NHQ9 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC25.43■■□□□ 1.661e-8■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-227ENST00000533243 1558 ntTSL 224.08■■□□□ 1.441e-7■■■■□ 25.5
DDX55Q8NHQ9 C12orf57-203ENST00000538392 979 ntTSL 223.21■■□□□ 1.311e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-206ENST00000578279 875 ntTSL 522.02■■□□□ 1.121e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.99■■□□□ 1.111e-7■■■■□ 25.5
DDX55Q8NHQ9 PES1-212ENST00000488719 1732 ntTSL 221.56■■□□□ 1.041e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-209ENST00000551800 773 ntTSL 521.3■■□□□ 11e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-210ENST00000551888 636 ntTSL 221.22■□□□□ 0.991e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-207ENST00000550419 919 ntTSL 321.08■□□□□ 0.971e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-208ENST00000551706 984 ntTSL 1 (best)20.89■□□□□ 0.931e-7■■■■□ 25.5
DDX55Q8NHQ9 SFT2D1-202ENST00000478705 659 ntTSL 220.65■□□□□ 0.91e-7■■■■□ 25.5
DDX55Q8NHQ9 FBXL5-212ENST00000514541 592 ntTSL 420.04■□□□□ 0.81e-7■■■■□ 25.5
DDX55Q8NHQ9 FBXL5-213ENST00000515679 591 ntTSL 320.04■□□□□ 0.81e-7■■■■□ 25.5
DDX55Q8NHQ9 FBXL5-206ENST00000507899 741 ntTSL 520.04■□□□□ 0.81e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-204ENST00000547281 825 ntTSL 320.03■□□□□ 0.81e-7■■■■□ 25.5
DDX55Q8NHQ9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.798e-11■■■■□ 25.5
DDX55Q8NHQ9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.761e-9■■■■□ 25.5
DDX55Q8NHQ9 CDK4-215ENST00000553237 952 ntTSL 219.61■□□□□ 0.731e-7■■■■□ 25.5
DDX55Q8NHQ9 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.738e-11■■■■□ 25.5
DDX55Q8NHQ9 CDK4-206ENST00000549606 558 ntTSL 2 BASIC19.57■□□□□ 0.721e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-205ENST00000578168 583 ntTSL 219.36■□□□□ 0.691e-9■■■■□ 25.5
DDX55Q8NHQ9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.681e-8■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.21■□□□□ 0.671e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.661e-9■■■■□ 25.5
DDX55Q8NHQ9 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC19.08■□□□□ 0.651e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.641e-9■■■■□ 25.5
DDX55Q8NHQ9 FBXL5-208ENST00000510802 532 ntTSL 518.96■□□□□ 0.631e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-218ENST00000583486 796 ntTSL 218.84■□□□□ 0.611e-9■■■■□ 25.5
DDX55Q8NHQ9 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.61e-9■■■■□ 25.5
DDX55Q8NHQ9 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.68■□□□□ 0.581e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-224ENST00000584460 1855 ntTSL 218.56■□□□□ 0.561e-9■■■■□ 25.5
DDX55Q8NHQ9 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.36■□□□□ 0.531e-9■■■■□ 25.5
DDX55Q8NHQ9 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.521e-7■■■■□ 25.5
DDX55Q8NHQ9 PES1-208ENST00000441668 999 ntTSL 318.12■□□□□ 0.491e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.82■□□□□ 0.441e-9■■■■□ 25.5
DDX55Q8NHQ9 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.421e-7■■■■□ 25.5
DDX55Q8NHQ9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.411e-7■■■■□ 25.5
DDX55Q8NHQ9 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.58■□□□□ 0.41e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.41e-7■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-226ENST00000532478 940 ntTSL 517.13■□□□□ 0.331e-7■■■■□ 25.5
DDX55Q8NHQ9 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.321e-7■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.91■□□□□ 0.31e-7■■■■□ 25.5
DDX55Q8NHQ9 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.31e-7■■■■□ 25.5
DDX55Q8NHQ9 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.261e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-203ENST00000546489 776 ntTSL 515.74■□□□□ 0.111e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-212ENST00000552388 694 ntTSL 315.74■□□□□ 0.111e-7■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-201ENST00000395449 1772 ntTSL 515.58■□□□□ 0.081e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-214ENST00000552862 447 ntTSL 315.54■□□□□ 0.081e-7■■■■□ 25.5
DDX55Q8NHQ9 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.071e-7■■■■□ 25.5
DDX55Q8NHQ9 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.041e-7■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-208ENST00000525635 451 ntTSL 214.88□□□□□ -0.031e-7■■■■□ 25.5
DDX55Q8NHQ9 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.057e-12■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-214ENST00000527927 850 ntTSL 514.51□□□□□ -0.091e-7■■■■□ 25.5
DDX55Q8NHQ9 GPS1-203ENST00000392357 4076 ntTSL 1 (best)14.32□□□□□ -0.121e-9■■■■□ 25.5
DDX55Q8NHQ9 NFYB-201ENST00000240055 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.21e-7■■■■□ 25.5
DDX55Q8NHQ9 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC13.76□□□□□ -0.211e-7■■■■□ 25.5
DDX55Q8NHQ9 PES1-205ENST00000405677 2708 ntTSL 2 BASIC13.48□□□□□ -0.251e-7■■■■□ 25.5
DDX55Q8NHQ9 PES1-203ENST00000402281 2760 ntTSL 2 BASIC12.95□□□□□ -0.341e-7■■■■□ 25.5
DDX55Q8NHQ9 MAP2K1-203ENST00000566326 1432 ntTSL 5 BASIC12.44□□□□□ -0.421e-7■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-213ENST00000527776 709 ntTSL 212.43□□□□□ -0.421e-7■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-205ENST00000524782 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.441e-7■■■■□ 25.5
DDX55Q8NHQ9 LMBRD1-203ENST00000472827 1861 ntTSL 512.15□□□□□ -0.461e-7■■■■□ 25.5
DDX55Q8NHQ9 ARFGAP2-210ENST00000526342 474 ntTSL 511.99□□□□□ -0.491e-7■■■■□ 25.5
DDX55Q8NHQ9 ACAT2-203ENST00000472052 1641 ntTSL 211.71□□□□□ -0.541e-7■■■■□ 25.5
DDX55Q8NHQ9 C12orf57-207ENST00000545581 556 ntTSL 311.61□□□□□ -0.551e-7■■■■□ 25.5
DDX55Q8NHQ9 C12orf57-205ENST00000542222 640 ntTSL 211.28□□□□□ -0.61e-7■■■■□ 25.5
DDX55Q8NHQ9 CDK4-211ENST00000552254 769 ntTSL 211.1□□□□□ -0.631e-7■■■■□ 25.5
DDX55Q8NHQ9 SMC3-201ENST00000361804 4114 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.641e-7■■■■□ 25.5
DDX55Q8NHQ9 NFYA-201ENST00000341376 3811 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.761e-7■■■■□ 25.5
DDX55Q8NHQ9 SFT2D1-205ENST00000488773 546 ntTSL 57.01□□□□□ -1.291e-7■■■■□ 25.5
DDX55Q8NHQ9 SFT2D1-206ENST00000494682 359 ntTSL 35.1□□□□□ -1.591e-7■■■■□ 25.5
DDX55Q8NHQ9 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.35□□□□□ -1.871e-7■■■■□ 25.5
DDX55Q8NHQ9 MIR1244-1-201ENST00000612829 85 ntBASIC3.35□□□□□ -1.875e-14■■■■□ 25.5
DDX55Q8NHQ9 ARHGEF1-211ENST00000595723 872 ntTSL 519.27■□□□□ 0.689e-7■■■■□ 25.5
DDX55Q8NHQ9 ARHGEF1-222ENST00000600517 428 ntTSL 316.45■□□□□ 0.229e-7■■■■□ 25.5
Retrieved 100 of 15,504 protein–RNA pairs in 129.3 ms