RNA–Protein interactions for RNA: ENST00000566296.1

TSR3-202, Transcript of TSR3, acp transferase ribosome maturation factor, humanhuman

TSL 3

Gene TSR3, Length 649 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSR3-202ENST00000566296 NISCHQ9Y2I1 1504 aa41.47■■■■■ 4.23
TSR3-202ENST00000566296 CCDC180Q9P1Z9 1646 aa37.31■■■■□ 3.56
TSR3-202ENST00000566296 ABCC9O60706 1549 aa37.28■■■■□ 3.56
TSR3-202ENST00000566296 RB1CC1Q8TDY2 1594 aa35.51■■■■□ 3.28
TSR3-202ENST00000566296 NACADO15069 1562 aa35.25■■■■□ 3.23
TSR3-202ENST00000566296 DCAF8L2P0C7V8 631 aa34.97■■■■□ 3.19
TSR3-202ENST00000566296 DNAJC5BQ9UF47 199 aa34.87■■■■□ 3.17
TSR3-202ENST00000566296 MYO15BQ96JP2 1530 aa34.74■■■■□ 3.15
TSR3-202ENST00000566296 UNC13AQ9UPW8 1703 aa34.69■■■■□ 3.14
TSR3-202ENST00000566296 PABPN1Q86U42 306 aaKnown RBP eCLIP34.63■■■■□ 3.13
TSR3-202ENST00000566296 BICRAQ9NZM4 1560 aa34.4■■■■□ 3.1
TSR3-202ENST00000566296 ZCCHC6Q5VYS8 1495 aaKnown RBP34.39■■■■□ 3.1
TSR3-202ENST00000566296 DCAF1Q9Y4B6 1507 aa34.28■■■■□ 3.08
TSR3-202ENST00000566296 SHROOM4Q9ULL8 1493 aa34.05■■■■□ 3.04
TSR3-202ENST00000566296 SCRIBQ14160 1630 aa33.96■■■■□ 3.03
TSR3-202ENST00000566296 CC2D2AQ9P2K1 1620 aa33.68■■■□□ 2.98
TSR3-202ENST00000566296 EIF4G1Q04637 1599 aaKnown RBP33.61■■■□□ 2.97
TSR3-202ENST00000566296 CECR2Q9BXF3 1484 aa33.6■■■□□ 2.97
TSR3-202ENST00000566296 NCAPD3P42695 1498 aa32.49■■■□□ 2.79
TSR3-202ENST00000566296 ATAD2BQ9ULI0 1458 aa32.4■■■□□ 2.78
TSR3-202ENST00000566296 SMARCA4P51532 1647 aa32.39■■■□□ 2.78
TSR3-202ENST00000566296 SMARCA2P51531 1590 aa32.36■■■□□ 2.77
TSR3-202ENST00000566296 HMGXB3Q12766 1538 aa32.31■■■□□ 2.76
TSR3-202ENST00000566296 ERCC6Q03468 1493 aa32.25■■■□□ 2.75
TSR3-202ENST00000566296 BAZ1AQ9NRL2 1556 aaPredicted RBP32.23■■■□□ 2.75
TSR3-202ENST00000566296 CUX2O14529 1486 aa32.19■■■□□ 2.74
TSR3-202ENST00000566296 BAZ1BQ9UIG0 1483 aaKnown RBP32.12■■■□□ 2.73
TSR3-202ENST00000566296 DNAJC5Q9H3Z4 198 aa32.11■■■□□ 2.73
TSR3-202ENST00000566296 PEG3Q9GZU2 1588 aa32.07■■■□□ 2.72
TSR3-202ENST00000566296 NESP48681 1621 aa31.97■■■□□ 2.71
TSR3-202ENST00000566296 MROH2BQ7Z745 1585 aa31.93■■■□□ 2.7
TSR3-202ENST00000566296 LAMC3Q9Y6N6 1575 aa31.82■■■□□ 2.68
TSR3-202ENST00000566296 THOC2Q8NI27 1593 aaKnown RBP31.73■■■□□ 2.67
TSR3-202ENST00000566296 PDS5BQ9NTI5 1447 aa31.63■■■□□ 2.65
TSR3-202ENST00000566296 KIF21AQ7Z4S6 1674 aa31.63■■■□□ 2.65
TSR3-202ENST00000566296 WIZO95785 1651 aa31.56■■■□□ 2.64
TSR3-202ENST00000566296 CADPSQ9ULU8 1353 aa31.51■■■□□ 2.63
TSR3-202ENST00000566296 MRC2Q9UBG0 1479 aa31.37■■■□□ 2.61
TSR3-202ENST00000566296 WDR62O43379 1518 aa31.29■■■□□ 2.6
TSR3-202ENST00000566296 CEP164Q9UPV0 1460 aa31.25■■■□□ 2.59
TSR3-202ENST00000566296 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
TSR3-202ENST00000566296 TOP2AP11388 1531 aaKnown RBP31.21■■■□□ 2.59
TSR3-202ENST00000566296 FANCD2Q9BXW9 1451 aa31.18■■■□□ 2.58
TSR3-202ENST00000566296 CFTRP13569 1480 aa31.14■■■□□ 2.58
TSR3-202ENST00000566296 PRDM2Q13029 1718 aa30.93■■■□□ 2.54
TSR3-202ENST00000566296 URB2Q14146 1524 aaKnown RBP30.89■■■□□ 2.54
TSR3-202ENST00000566296 CCDC88BA6NC98 1476 aa30.79■■■□□ 2.52
TSR3-202ENST00000566296 TRIM41Q8WV44 630 aa30.74■■■□□ 2.51
TSR3-202ENST00000566296 OSCARQ8IYS5 282 aa30.64■■■□□ 2.5
TSR3-202ENST00000566296 IFT140Q96RY7 1462 aa30.62■■■□□ 2.49
TSR3-202ENST00000566296 TOPBP1Q92547 1522 aa30.58■■■□□ 2.49
TSR3-202ENST00000566296 ABCC8Q09428 1581 aa30.54■■■□□ 2.48
TSR3-202ENST00000566296 ZNF608Q9ULD9 1512 aaPredicted RBP30.52■■■□□ 2.48
TSR3-202ENST00000566296 DNMBPQ6XZF7 1577 aa30.49■■■□□ 2.47
TSR3-202ENST00000566296 EIF4G3O43432 1585 aaKnown RBP30.41■■■□□ 2.46
TSR3-202ENST00000566296 RIMBP3CA6NJZ7 1639 aa30.3■■■□□ 2.44
TSR3-202ENST00000566296 RIMBP3BA6NNM3 1639 aa30.3■■■□□ 2.44
TSR3-202ENST00000566296 TARBP1Q13395 1621 aaKnown RBP30.3■■■□□ 2.44
TSR3-202ENST00000566296 RIMBP3Q9UFD9 1639 aa30.3■■■□□ 2.44
TSR3-202ENST00000566296 POLA1P09884 1462 aaPredicted RBP30.26■■■□□ 2.44
TSR3-202ENST00000566296 AQRO60306 1485 aaKnown RBP eCLIP30.22■■■□□ 2.439e-11■■■■■ 42.1
TSR3-202ENST00000566296 ARHGEF11O15085 1522 aa30.21■■■□□ 2.43
TSR3-202ENST00000566296 CHD1O14646 1710 aa30.19■■■□□ 2.42
TSR3-202ENST00000566296 RAD54L2Q9Y4B4 1467 aa30.12■■■□□ 2.41
TSR3-202ENST00000566296 SOGA1O94964 1423 aa30.1■■■□□ 2.41
TSR3-202ENST00000566296 FGD5Q6ZNL6 1462 aa30.07■■■□□ 2.4
TSR3-202ENST00000566296 WDR97A6NE52 1622 aa30.07■■■□□ 2.4
TSR3-202ENST00000566296 FBLN2P98095 1184 aa30.05■■■□□ 2.4
TSR3-202ENST00000566296 TDRD9Q8NDG6 1382 aaKnown RBP30.03■■■□□ 2.4
TSR3-202ENST00000566296 CUX1P39880 1505 aa30.02■■■□□ 2.4
TSR3-202ENST00000566296 SNAPC4Q5SXM2 1469 aa29.98■■■□□ 2.39
TSR3-202ENST00000566296 CYB5RLQ6IPT4 315 aa29.92■■■□□ 2.38
TSR3-202ENST00000566296 MAGI1Q96QZ7 1491 aaPredicted RBP29.91■■■□□ 2.38
TSR3-202ENST00000566296 ARAP1Q96P48 1450 aa29.89■■■□□ 2.38
TSR3-202ENST00000566296 GRIN2BQ13224 1484 aa29.88■■■□□ 2.37
TSR3-202ENST00000566296 SYNJ1O43426 1573 aa29.85■■■□□ 2.37
TSR3-202ENST00000566296 CHMP7Q8WUX9 453 aaPredicted RBP29.83■■■□□ 2.37
TSR3-202ENST00000566296 CLASP1Q7Z460 1538 aa29.82■■■□□ 2.36
TSR3-202ENST00000566296 SUPT5HO00267 1087 aaKnown RBP29.82■■■□□ 2.36
TSR3-202ENST00000566296 PBRM1Q86U86 1689 aa29.8■■■□□ 2.36
TSR3-202ENST00000566296 SYNJ2O15056 1496 aa29.8■■■□□ 2.36
TSR3-202ENST00000566296 GAPVD1Q14C86 1478 aa29.76■■■□□ 2.35
TSR3-202ENST00000566296 ABCA10Q8WWZ4 1543 aa29.74■■■□□ 2.35
TSR3-202ENST00000566296 ABCA5Q8WWZ7 1642 aa29.71■■■□□ 2.35
TSR3-202ENST00000566296 TRHP20396 242 aaPredicted RBP29.64■■■□□ 2.34
TSR3-202ENST00000566296 WRNQ14191 1432 aaPredicted RBP eCLIP29.6■■■□□ 2.33
TSR3-202ENST00000566296 BIVM-ERCC5R4GMW8 1640 aa29.57■■■□□ 2.32
TSR3-202ENST00000566296 TOP2BQ02880 1626 aa29.56■■■□□ 2.32
TSR3-202ENST00000566296 ADAMTS12P58397 1594 aa29.51■■■□□ 2.31
TSR3-202ENST00000566296 GRIN2AQ12879 1464 aa29.49■■■□□ 2.31
TSR3-202ENST00000566296 FHAD1B1AJZ9 1412 aa29.39■■■□□ 2.3
TSR3-202ENST00000566296 NUP160Q12769 1436 aa29.39■■■□□ 2.3
TSR3-202ENST00000566296 CEP170Q5SW79 1584 aa29.39■■■□□ 2.29
TSR3-202ENST00000566296 ERICH3Q5RHP9 1530 aa29.38■■■□□ 2.29
TSR3-202ENST00000566296 ERCC6L2Q5T890 1561 aa29.31■■■□□ 2.28
TSR3-202ENST00000566296 SHROOM2Q13796 1616 aa29.27■■■□□ 2.28
TSR3-202ENST00000566296 PRG4Q92954 1404 aaPredicted RBP29.1■■■□□ 2.25
TSR3-202ENST00000566296 RUSC2Q8N2Y8 1516 aa29.1■■■□□ 2.25
TSR3-202ENST00000566296 JPH4Q96JJ6 628 aa29.04■■■□□ 2.24
TSR3-202ENST00000566296 KIF27Q86VH2 1401 aa28.98■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms