RNA–Protein interactions for RNA: ENST00000552862.1

CDK4-214, Transcript of cyclin dependent kinase 4, humanhuman

TSL 3

Gene CDK4, Length 447 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK4-214ENST00000552862 NISCHQ9Y2I1 1504 aa30.78■■■□□ 2.52
CDK4-214ENST00000552862 CCDC180Q9P1Z9 1646 aa27.64■■■□□ 2.02
CDK4-214ENST00000552862 ABCC9O60706 1549 aa27.55■■■□□ 2
CDK4-214ENST00000552862 RB1CC1Q8TDY2 1594 aa26.41■■□□□ 1.82
CDK4-214ENST00000552862 NACADO15069 1562 aa26.26■■□□□ 1.79
CDK4-214ENST00000552862 DCAF8L2P0C7V8 631 aa26.14■■□□□ 1.78
CDK4-214ENST00000552862 MYO15BQ96JP2 1530 aa25.97■■□□□ 1.75
CDK4-214ENST00000552862 DNAJC5BQ9UF47 199 aa25.77■■□□□ 1.72
CDK4-214ENST00000552862 PABPN1Q86U42 306 aaKnown RBP eCLIP25.69■■□□□ 1.7
CDK4-214ENST00000552862 DCAF1Q9Y4B6 1507 aa25.57■■□□□ 1.68
CDK4-214ENST00000552862 SHROOM4Q9ULL8 1493 aa25.46■■□□□ 1.67
CDK4-214ENST00000552862 ZCCHC6Q5VYS8 1495 aaKnown RBP25.45■■□□□ 1.66
CDK4-214ENST00000552862 UNC13AQ9UPW8 1703 aa25.41■■□□□ 1.66
CDK4-214ENST00000552862 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
CDK4-214ENST00000552862 SCRIBQ14160 1630 aa25■■□□□ 1.59
CDK4-214ENST00000552862 CECR2Q9BXF3 1484 aa24.94■■□□□ 1.58
CDK4-214ENST00000552862 CC2D2AQ9P2K1 1620 aa24.89■■□□□ 1.57
CDK4-214ENST00000552862 EIF4G1Q04637 1599 aaKnown RBP24.87■■□□□ 1.57
CDK4-214ENST00000552862 NCAPD3P42695 1498 aa24.24■■□□□ 1.47
CDK4-214ENST00000552862 SMARCA2P51531 1590 aa24.11■■□□□ 1.45
CDK4-214ENST00000552862 ATAD2BQ9ULI0 1458 aa24.05■■□□□ 1.44
CDK4-214ENST00000552862 DNAJC5Q9H3Z4 198 aa24■■□□□ 1.43
CDK4-214ENST00000552862 ERCC6Q03468 1493 aa23.99■■□□□ 1.43
CDK4-214ENST00000552862 HMGXB3Q12766 1538 aa23.99■■□□□ 1.43
CDK4-214ENST00000552862 CUX2O14529 1486 aa23.98■■□□□ 1.43
CDK4-214ENST00000552862 BAZ1AQ9NRL2 1556 aaPredicted RBP23.98■■□□□ 1.43
CDK4-214ENST00000552862 SMARCA4P51532 1647 aa23.94■■□□□ 1.42
CDK4-214ENST00000552862 BAZ1BQ9UIG0 1483 aaKnown RBP23.87■■□□□ 1.41
CDK4-214ENST00000552862 PEG3Q9GZU2 1588 aa23.8■■□□□ 1.4
CDK4-214ENST00000552862 PDS5BQ9NTI5 1447 aa23.67■■□□□ 1.38
CDK4-214ENST00000552862 LAMC3Q9Y6N6 1575 aa23.67■■□□□ 1.38
CDK4-214ENST00000552862 MROH2BQ7Z745 1585 aa23.57■■□□□ 1.36
CDK4-214ENST00000552862 NESP48681 1621 aa23.55■■□□□ 1.36
CDK4-214ENST00000552862 CADPSQ9ULU8 1353 aa23.52■■□□□ 1.36
CDK4-214ENST00000552862 THOC2Q8NI27 1593 aaKnown RBP23.34■■□□□ 1.33
CDK4-214ENST00000552862 MRC2Q9UBG0 1479 aa23.29■■□□□ 1.32
CDK4-214ENST00000552862 WIZO95785 1651 aa23.23■■□□□ 1.31
CDK4-214ENST00000552862 KIF21AQ7Z4S6 1674 aa23.22■■□□□ 1.31
CDK4-214ENST00000552862 CEP164Q9UPV0 1460 aa23.22■■□□□ 1.31
CDK4-214ENST00000552862 RSF1Q96T23 1441 aaPredicted RBP23.2■■□□□ 1.3
CDK4-214ENST00000552862 CFTRP13569 1480 aa23.17■■□□□ 1.3
CDK4-214ENST00000552862 WDR62O43379 1518 aa23.17■■□□□ 1.3
CDK4-214ENST00000552862 FANCD2Q9BXW9 1451 aa23.15■■□□□ 1.3
CDK4-214ENST00000552862 TOP2AP11388 1531 aaKnown RBP23.11■■□□□ 1.29
CDK4-214ENST00000552862 OSCARQ8IYS5 282 aa23.02■■□□□ 1.28
CDK4-214ENST00000552862 ABCC8Q09428 1581 aa22.93■■□□□ 1.26
CDK4-214ENST00000552862 TRIM41Q8WV44 630 aa22.84■■□□□ 1.25
CDK4-214ENST00000552862 CCDC88BA6NC98 1476 aa22.84■■□□□ 1.25
CDK4-214ENST00000552862 URB2Q14146 1524 aaKnown RBP22.82■■□□□ 1.24
CDK4-214ENST00000552862 IFT140Q96RY7 1462 aa22.8■■□□□ 1.24
CDK4-214ENST00000552862 PRDM2Q13029 1718 aa22.78■■□□□ 1.24
CDK4-214ENST00000552862 TOPBP1Q92547 1522 aa22.66■■□□□ 1.22
CDK4-214ENST00000552862 DNMBPQ6XZF7 1577 aa22.6■■□□□ 1.21
CDK4-214ENST00000552862 ZNF608Q9ULD9 1512 aaPredicted RBP22.51■■□□□ 1.19
CDK4-214ENST00000552862 SOGA1O94964 1423 aa22.46■■□□□ 1.19
CDK4-214ENST00000552862 FBLN2P98095 1184 aa22.45■■□□□ 1.18
CDK4-214ENST00000552862 WDR97A6NE52 1622 aa22.43■■□□□ 1.18
CDK4-214ENST00000552862 POLA1P09884 1462 aaPredicted RBP22.41■■□□□ 1.18
CDK4-214ENST00000552862 AQRO60306 1485 aaKnown RBP eCLIP22.41■■□□□ 1.18
CDK4-214ENST00000552862 EIF4G3O43432 1585 aaKnown RBP22.4■■□□□ 1.18
CDK4-214ENST00000552862 CHMP7Q8WUX9 453 aaPredicted RBP22.38■■□□□ 1.17
CDK4-214ENST00000552862 TARBP1Q13395 1621 aaKnown RBP22.38■■□□□ 1.17
CDK4-214ENST00000552862 CYB5RLQ6IPT4 315 aa22.34■■□□□ 1.17
CDK4-214ENST00000552862 ARHGEF11O15085 1522 aa22.34■■□□□ 1.17
CDK4-214ENST00000552862 RIMBP3CA6NJZ7 1639 aa22.34■■□□□ 1.17
CDK4-214ENST00000552862 RIMBP3BA6NNM3 1639 aa22.34■■□□□ 1.17
CDK4-214ENST00000552862 RIMBP3Q9UFD9 1639 aa22.34■■□□□ 1.17
CDK4-214ENST00000552862 TDRD9Q8NDG6 1382 aaKnown RBP22.31■■□□□ 1.16
CDK4-214ENST00000552862 MAGI1Q96QZ7 1491 aaPredicted RBP22.28■■□□□ 1.16
CDK4-214ENST00000552862 GRIN2BQ13224 1484 aa22.27■■□□□ 1.16
CDK4-214ENST00000552862 FGD5Q6ZNL6 1462 aa22.27■■□□□ 1.16
CDK4-214ENST00000552862 RAD54L2Q9Y4B4 1467 aa22.26■■□□□ 1.15
CDK4-214ENST00000552862 SUPT5HO00267 1087 aaKnown RBP22.22■■□□□ 1.15
CDK4-214ENST00000552862 SYNJ1O43426 1573 aa22.19■■□□□ 1.14
CDK4-214ENST00000552862 TRHP20396 242 aaPredicted RBP22.18■■□□□ 1.14
CDK4-214ENST00000552862 CHD1O14646 1710 aa22.17■■□□□ 1.14
CDK4-214ENST00000552862 SYNJ2O15056 1496 aa22.17■■□□□ 1.14
CDK4-214ENST00000552862 CUX1P39880 1505 aa22.16■■□□□ 1.14
CDK4-214ENST00000552862 SNAPC4Q5SXM2 1469 aa22.16■■□□□ 1.14
CDK4-214ENST00000552862 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
CDK4-214ENST00000552862 WRNQ14191 1432 aaPredicted RBP eCLIP22.14■■□□□ 1.13
CDK4-214ENST00000552862 ABCA10Q8WWZ4 1543 aa22.1■■□□□ 1.13
CDK4-214ENST00000552862 ARAP1Q96P48 1450 aa22.05■■□□□ 1.12
CDK4-214ENST00000552862 CLASP1Q7Z460 1538 aa22.02■■□□□ 1.12
CDK4-214ENST00000552862 FHAD1B1AJZ9 1412 aa21.92■■□□□ 1.1
CDK4-214ENST00000552862 PBRM1Q86U86 1689 aa21.91■■□□□ 1.1
CDK4-214ENST00000552862 ABCA5Q8WWZ7 1642 aa21.91■■□□□ 1.1
CDK4-214ENST00000552862 TOP2BQ02880 1626 aa21.9■■□□□ 1.1
CDK4-214ENST00000552862 GRIN2AQ12879 1464 aa21.9■■□□□ 1.1
CDK4-214ENST00000552862 ERICH3Q5RHP9 1530 aa21.87■■□□□ 1.09
CDK4-214ENST00000552862 BIVM-ERCC5R4GMW8 1640 aa21.84■■□□□ 1.09
CDK4-214ENST00000552862 NUP160Q12769 1436 aa21.83■■□□□ 1.09
CDK4-214ENST00000552862 NPM1P06748 294 aaKnown RBP eCLIP21.78■■□□□ 1.08
CDK4-214ENST00000552862 JPH4Q96JJ6 628 aa21.77■■□□□ 1.08
CDK4-214ENST00000552862 ADAMTS12P58397 1594 aa21.76■■□□□ 1.07
CDK4-214ENST00000552862 KIF27Q86VH2 1401 aa21.68■■□□□ 1.06
CDK4-214ENST00000552862 CEP170Q5SW79 1584 aa21.68■■□□□ 1.06
CDK4-214ENST00000552862 AEBP2Q6ZN18 517 aaPredicted RBP21.67■■□□□ 1.06
CDK4-214ENST00000552862 PRG4Q92954 1404 aaPredicted RBP21.65■■□□□ 1.06
CDK4-214ENST00000552862 SHROOM2Q13796 1616 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms