RNA–Protein interactions for RNA: ENST00000257904.10

CDK4-201, Transcript of cyclin dependent kinase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK4, Length 2,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK4-201ENST00000257904 NISCHQ9Y2I1 1504 aa34.96■■■■□ 3.19
CDK4-201ENST00000257904 CCDC180Q9P1Z9 1646 aa30.35■■■□□ 2.45
CDK4-201ENST00000257904 SHROOM4Q9ULL8 1493 aa29.44■■■□□ 2.3
CDK4-201ENST00000257904 ZCCHC6Q5VYS8 1495 aaKnown RBP29.39■■■□□ 2.3
CDK4-201ENST00000257904 SUPT5HO00267 1087 aaKnown RBP29.03■■■□□ 2.24
CDK4-201ENST00000257904 DCAF8L2P0C7V8 631 aa28.95■■■□□ 2.22
CDK4-201ENST00000257904 DCAF1Q9Y4B6 1507 aa28.88■■■□□ 2.21
CDK4-201ENST00000257904 ABCC9O60706 1549 aa28.64■■■□□ 2.17
CDK4-201ENST00000257904 MYO15BQ96JP2 1530 aa28.48■■■□□ 2.15
CDK4-201ENST00000257904 CHIC1Q5VXU3 224 aa28.44■■■□□ 2.14
CDK4-201ENST00000257904 NACADO15069 1562 aa28.26■■■□□ 2.11
CDK4-201ENST00000257904 HRCP23327 699 aa28.17■■■□□ 2.1
CDK4-201ENST00000257904 SCRIBQ14160 1630 aa27.99■■■□□ 2.07
CDK4-201ENST00000257904 RB1CC1Q8TDY2 1594 aa27.97■■■□□ 2.07
CDK4-201ENST00000257904 PCGF6Q9BYE7 350 aa27.87■■■□□ 2.05
CDK4-201ENST00000257904 LOC105371045A0A1W2PR82 267 aa27.57■■■□□ 2
CDK4-201ENST00000257904 PPARGC1BQ86YN6 1023 aaKnown RBP27.47■■□□□ 1.99
CDK4-201ENST00000257904 UNC13AQ9UPW8 1703 aa27.43■■□□□ 1.98
CDK4-201ENST00000257904 TRIM26Q12899 539 aaPredicted RBP27.31■■□□□ 1.96
CDK4-201ENST00000257904 RSF1Q96T23 1441 aaPredicted RBP27.31■■□□□ 1.96
CDK4-201ENST00000257904 CECR2Q9BXF3 1484 aa27.19■■□□□ 1.94
CDK4-201ENST00000257904 BICRAQ9NZM4 1560 aa27.17■■□□□ 1.94
CDK4-201ENST00000257904 PABPN1Q86U42 306 aaKnown RBP eCLIP27.08■■□□□ 1.93
CDK4-201ENST00000257904 TRIM41Q8WV44 630 aa27.04■■□□□ 1.92
CDK4-201ENST00000257904 MROH2BQ7Z745 1585 aa27.04■■□□□ 1.92
CDK4-201ENST00000257904 BAZ1AQ9NRL2 1556 aaPredicted RBP26.97■■□□□ 1.91
CDK4-201ENST00000257904 ZEB1P37275 1124 aaPredicted RBP26.89■■□□□ 1.89
CDK4-201ENST00000257904 WIZO95785 1651 aa26.87■■□□□ 1.89
CDK4-201ENST00000257904 SMARCA4P51532 1647 aa26.83■■□□□ 1.89
CDK4-201ENST00000257904 FAM9AQ8IZU1 332 aaPredicted RBP26.78■■□□□ 1.88
CDK4-201ENST00000257904 TOP2AP11388 1531 aaKnown RBP26.52■■□□□ 1.84
CDK4-201ENST00000257904 EHMT2Q96KQ7 1210 aa26.51■■□□□ 1.83
CDK4-201ENST00000257904 PEG3Q9GZU2 1588 aa26.49■■□□□ 1.83
CDK4-201ENST00000257904 EIF4G1Q04637 1599 aaKnown RBP26.44■■□□□ 1.82
CDK4-201ENST00000257904 ATAD2BQ9ULI0 1458 aa26.37■■□□□ 1.81
CDK4-201ENST00000257904 SMARCA2P51531 1590 aa26.33■■□□□ 1.81
CDK4-201ENST00000257904 CCDC88BA6NC98 1476 aa26.32■■□□□ 1.8
CDK4-201ENST00000257904 BAZ1BQ9UIG0 1483 aaKnown RBP26.22■■□□□ 1.79
CDK4-201ENST00000257904 SCAF1Q9H7N4 1312 aaKnown RBP26.15■■□□□ 1.78
CDK4-201ENST00000257904 NCAPD3P42695 1498 aa26.11■■□□□ 1.77
CDK4-201ENST00000257904 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.11■■□□□ 1.77
CDK4-201ENST00000257904 ABCC8Q09428 1581 aa26.1■■□□□ 1.77
CDK4-201ENST00000257904 WRNQ14191 1432 aaPredicted RBP eCLIP26.09■■□□□ 1.77
CDK4-201ENST00000257904 CCER1Q8TC90 406 aaPredicted RBP26.07■■□□□ 1.76
CDK4-201ENST00000257904 HMGXB3Q12766 1538 aa26.06■■□□□ 1.76
CDK4-201ENST00000257904 PELP1Q8IZL8 1130 aaKnown RBP26.06■■□□□ 1.76
CDK4-201ENST00000257904 CEP162Q5TB80 1403 aa25.99■■□□□ 1.75
CDK4-201ENST00000257904 TNIKQ9UKE5 1360 aa25.93■■□□□ 1.74
CDK4-201ENST00000257904 SOGA1O94964 1423 aa25.93■■□□□ 1.74
CDK4-201ENST00000257904 EEA1Q15075 1411 aa25.9■■□□□ 1.74
CDK4-201ENST00000257904 CC2D2AQ9P2K1 1620 aa25.89■■□□□ 1.74
CDK4-201ENST00000257904 ACIN1Q9UKV3 1341 aaKnown RBP25.8■■□□□ 1.72
CDK4-201ENST00000257904 CSRNP3Q8WYN3 585 aa25.79■■□□□ 1.72
CDK4-201ENST00000257904 TTBK1Q5TCY1 1321 aaPredicted RBP25.78■■□□□ 1.72
CDK4-201ENST00000257904 RUSC2Q8N2Y8 1516 aa25.77■■□□□ 1.72
CDK4-201ENST00000257904 DIEXFQ68CQ4 756 aaKnown RBP25.76■■□□□ 1.71
CDK4-201ENST00000257904 GOLGA3Q08378 1498 aa25.73■■□□□ 1.71
CDK4-201ENST00000257904 NEUROD1Q13562 356 aa25.72■■□□□ 1.71
CDK4-201ENST00000257904 UBTFP17480 764 aaKnown RBP25.69■■□□□ 1.7
CDK4-201ENST00000257904 CENPBP07199 599 aaPredicted RBP25.6■■□□□ 1.69
CDK4-201ENST00000257904 CFTRP13569 1480 aa25.58■■□□□ 1.69
CDK4-201ENST00000257904 SYNJ1O43426 1573 aa25.57■■□□□ 1.68
CDK4-201ENST00000257904 CEP164Q9UPV0 1460 aa25.55■■□□□ 1.68
CDK4-201ENST00000257904 KIF21BO75037 1637 aa25.54■■□□□ 1.68
CDK4-201ENST00000257904 ZNF316A6NFI3 1004 aaPredicted RBP25.5■■□□□ 1.67
CDK4-201ENST00000257904 GTF3C3Q9Y5Q9 886 aa25.49■■□□□ 1.67
CDK4-201ENST00000257904 CADPSQ9ULU8 1353 aa25.46■■□□□ 1.67
CDK4-201ENST00000257904 CLIP1P30622 1438 aa25.43■■□□□ 1.66
CDK4-201ENST00000257904 PRDM2Q13029 1718 aa25.4■■□□□ 1.66
CDK4-201ENST00000257904 VPS8Q8N3P4 1428 aa25.38■■□□□ 1.65
CDK4-201ENST00000257904 TOP2BQ02880 1626 aa25.37■■□□□ 1.65
CDK4-201ENST00000257904 HNRNPUL2Q1KMD3 747 aaKnown RBP25.32■■□□□ 1.64
CDK4-201ENST00000257904 BIVM-ERCC5R4GMW8 1640 aa25.32■■□□□ 1.64
CDK4-201ENST00000257904 RAPGEF2Q9Y4G8 1499 aa25.29■■□□□ 1.64
CDK4-201ENST00000257904 DNAJC5BQ9UF47 199 aa25.28■■□□□ 1.64
CDK4-201ENST00000257904 CUX1P39880 1505 aa25.26■■□□□ 1.63
CDK4-201ENST00000257904 APLP2Q06481 763 aa25.21■■□□□ 1.63
CDK4-201ENST00000257904 NESP48681 1621 aa25.2■■□□□ 1.62
CDK4-201ENST00000257904 FANCD2Q9BXW9 1451 aa25.18■■□□□ 1.62
CDK4-201ENST00000257904 LAMC3Q9Y6N6 1575 aa25.17■■□□□ 1.62
CDK4-201ENST00000257904 MIER1Q8N108 512 aa25.16■■□□□ 1.62
CDK4-201ENST00000257904 YTHDC1Q96MU7 727 aaKnown RBP25.13■■□□□ 1.61
CDK4-201ENST00000257904 ERICH3Q5RHP9 1530 aa25.08■■□□□ 1.6
CDK4-201ENST00000257904 RANGAP1P46060 587 aaPredicted RBP25.04■■□□□ 1.6
CDK4-201ENST00000257904 PRXQ9BXM0 1461 aa25.03■■□□□ 1.6
CDK4-201ENST00000257904 CLSPNQ9HAW4 1339 aa25.02■■□□□ 1.6
CDK4-201ENST00000257904 ARAP1Q96P48 1450 aa25■■□□□ 1.59
CDK4-201ENST00000257904 PDS5BQ9NTI5 1447 aa24.99■■□□□ 1.59
CDK4-201ENST00000257904 KIF27Q86VH2 1401 aa24.97■■□□□ 1.59
CDK4-201ENST00000257904 DNMBPQ6XZF7 1577 aa24.96■■□□□ 1.59
CDK4-201ENST00000257904 DHX57Q6P158 1386 aaKnown RBP24.96■■□□□ 1.59
CDK4-201ENST00000257904 FGD5Q6ZNL6 1462 aa24.95■■□□□ 1.59
CDK4-201ENST00000257904 TOPBP1Q92547 1522 aa24.92■■□□□ 1.58
CDK4-201ENST00000257904 KIF21AQ7Z4S6 1674 aa24.86■■□□□ 1.57
CDK4-201ENST00000257904 URB2Q14146 1524 aaKnown RBP24.86■■□□□ 1.57
CDK4-201ENST00000257904 RRBP1Q9P2E9 1410 aaKnown RBP24.86■■□□□ 1.57
CDK4-201ENST00000257904 KANK4Q5T7N3 995 aaPredicted RBP24.85■■□□□ 1.57
CDK4-201ENST00000257904 CUX2O14529 1486 aa24.84■■□□□ 1.57
CDK4-201ENST00000257904 MYT1Q01538 1121 aa24.83■■□□□ 1.57
CDK4-201ENST00000257904 POLA1P09884 1462 aaPredicted RBP24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms