Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PCDH1Q08174 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.61■□□□□ 0.25
PCDH1Q08174 KRT18P31-201ENST00000506277 1292 ntBASIC16.61■□□□□ 0.25
PCDH1Q08174 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.61■□□□□ 0.25
PCDH1Q08174 AC138894.3-201ENST00000603787 634 ntBASIC16.61■□□□□ 0.25
PCDH1Q08174 AL121772.3-201ENST00000610840 674 ntBASIC16.61■□□□□ 0.25
PCDH1Q08174 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
PCDH1Q08174 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDH1Q08174 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.61■□□□□ 0.25
PCDH1Q08174 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
PCDH1Q08174 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 HCG4P8-203ENST00000443049 980 ntBASIC16.6■□□□□ 0.25
PCDH1Q08174 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH1Q08174 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDH1Q08174 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDH1Q08174 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH1Q08174 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDH1Q08174 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH1Q08174 AL139288.1-201ENST00000623748 933 ntBASIC16.6■□□□□ 0.25
PCDH1Q08174 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH1Q08174 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.6■□□□□ 0.25
PCDH1Q08174 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
PCDH1Q08174 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH1Q08174 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDH1Q08174 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDH1Q08174 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDH1Q08174 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
PCDH1Q08174 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
PCDH1Q08174 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PCDH1Q08174 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.59■□□□□ 0.25
PCDH1Q08174 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
PCDH1Q08174 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PCDH1Q08174 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PCDH1Q08174 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDH1Q08174 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PCDH1Q08174 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PCDH1Q08174 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms