RNA–Protein interactions for RNA: ENST00000345436.8

CKLF-202, Transcript of chemokine like factor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CKLF, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKLF-202ENST00000345436 NISCHQ9Y2I1 1504 aa43.64■■■■■ 4.58
CKLF-202ENST00000345436 CCDC180Q9P1Z9 1646 aa38.97■■■■□ 3.83
CKLF-202ENST00000345436 ABCC9O60706 1549 aa38.71■■■■□ 3.79
CKLF-202ENST00000345436 RB1CC1Q8TDY2 1594 aa37.04■■■■□ 3.52
CKLF-202ENST00000345436 DCAF8L2P0C7V8 631 aa36.92■■■■□ 3.5
CKLF-202ENST00000345436 NACADO15069 1562 aa36.88■■■■□ 3.49
CKLF-202ENST00000345436 MYO15BQ96JP2 1530 aa36.49■■■■□ 3.43
CKLF-202ENST00000345436 ZCCHC6Q5VYS8 1495 aaKnown RBP36.19■■■■□ 3.38
CKLF-202ENST00000345436 PABPN1Q86U42 306 aaKnown RBP eCLIP36.16■■■■□ 3.38
CKLF-202ENST00000345436 DCAF1Q9Y4B6 1507 aa36.11■■■■□ 3.37
CKLF-202ENST00000345436 DNAJC5BQ9UF47 199 aa35.99■■■■□ 3.35
CKLF-202ENST00000345436 UNC13AQ9UPW8 1703 aa35.92■■■■□ 3.34
CKLF-202ENST00000345436 BICRAQ9NZM4 1560 aa35.77■■■■□ 3.32
CKLF-202ENST00000345436 SHROOM4Q9ULL8 1493 aa35.56■■■■□ 3.28
CKLF-202ENST00000345436 SCRIBQ14160 1630 aa35.51■■■■□ 3.28
CKLF-202ENST00000345436 EIF4G1Q04637 1599 aaKnown RBP34.96■■■■□ 3.19
CKLF-202ENST00000345436 CC2D2AQ9P2K1 1620 aa34.94■■■■□ 3.18
CKLF-202ENST00000345436 CECR2Q9BXF3 1484 aa34.89■■■■□ 3.18
CKLF-202ENST00000345436 NCAPD3P42695 1498 aa34.05■■■■□ 3.04
CKLF-202ENST00000345436 ATAD2BQ9ULI0 1458 aa33.95■■■■□ 3.02
CKLF-202ENST00000345436 SMARCA2P51531 1590 aa33.92■■■■□ 3.02
CKLF-202ENST00000345436 SMARCA4P51532 1647 aa33.92■■■■□ 3.02
CKLF-202ENST00000345436 BAZ1AQ9NRL2 1556 aaPredicted RBP33.9■■■■□ 3.02
CKLF-202ENST00000345436 HMGXB3Q12766 1538 aa33.76■■■■□ 3
CKLF-202ENST00000345436 BAZ1BQ9UIG0 1483 aaKnown RBP33.68■■■□□ 2.98
CKLF-202ENST00000345436 PEG3Q9GZU2 1588 aa33.61■■■□□ 2.97
CKLF-202ENST00000345436 MROH2BQ7Z745 1585 aa33.56■■■□□ 2.96
CKLF-202ENST00000345436 ERCC6Q03468 1493 aa33.52■■■□□ 2.96
CKLF-202ENST00000345436 CUX2O14529 1486 aa33.32■■■□□ 2.92
CKLF-202ENST00000345436 NESP48681 1621 aa33.27■■■□□ 2.92
CKLF-202ENST00000345436 LAMC3Q9Y6N6 1575 aa33.21■■■□□ 2.91
CKLF-202ENST00000345436 WIZO95785 1651 aa33.13■■■□□ 2.89
CKLF-202ENST00000345436 PDS5BQ9NTI5 1447 aa33.13■■■□□ 2.89
CKLF-202ENST00000345436 CADPSQ9ULU8 1353 aa33.08■■■□□ 2.89
CKLF-202ENST00000345436 RSF1Q96T23 1441 aaPredicted RBP33.07■■■□□ 2.88
CKLF-202ENST00000345436 DNAJC5Q9H3Z4 198 aa32.99■■■□□ 2.87
CKLF-202ENST00000345436 TOP2AP11388 1531 aaKnown RBP32.83■■■□□ 2.85
CKLF-202ENST00000345436 THOC2Q8NI27 1593 aaKnown RBP32.83■■■□□ 2.85
CKLF-202ENST00000345436 KIF21AQ7Z4S6 1674 aa32.78■■■□□ 2.84
CKLF-202ENST00000345436 MRC2Q9UBG0 1479 aa32.71■■■□□ 2.83
CKLF-202ENST00000345436 CFTRP13569 1480 aa32.7■■■□□ 2.83
CKLF-202ENST00000345436 CEP164Q9UPV0 1460 aa32.67■■■□□ 2.82
CKLF-202ENST00000345436 FANCD2Q9BXW9 1451 aa32.64■■■□□ 2.82
CKLF-202ENST00000345436 WDR62O43379 1518 aa32.55■■■□□ 2.8
CKLF-202ENST00000345436 CCDC88BA6NC98 1476 aa32.48■■■□□ 2.79
CKLF-202ENST00000345436 URB2Q14146 1524 aaKnown RBP32.26■■■□□ 2.76
CKLF-202ENST00000345436 PRDM2Q13029 1718 aa32.23■■■□□ 2.75
CKLF-202ENST00000345436 ABCC8Q09428 1581 aa32.14■■■□□ 2.74
CKLF-202ENST00000345436 IFT140Q96RY7 1462 aa32.03■■■□□ 2.72
CKLF-202ENST00000345436 TOPBP1Q92547 1522 aa32.01■■■□□ 2.72
CKLF-202ENST00000345436 OSCARQ8IYS5 282 aa31.99■■■□□ 2.71
CKLF-202ENST00000345436 SUPT5HO00267 1087 aaKnown RBP31.97■■■□□ 2.71
CKLF-202ENST00000345436 DNMBPQ6XZF7 1577 aa31.93■■■□□ 2.7
CKLF-202ENST00000345436 ZNF608Q9ULD9 1512 aaPredicted RBP31.8■■■□□ 2.68
CKLF-202ENST00000345436 POLA1P09884 1462 aaPredicted RBP31.7■■■□□ 2.66
CKLF-202ENST00000345436 SOGA1O94964 1423 aa31.68■■■□□ 2.66
CKLF-202ENST00000345436 TRIM41Q8WV44 630 aa31.68■■■□□ 2.66
CKLF-202ENST00000345436 AQRO60306 1485 aaKnown RBP eCLIP31.63■■■□□ 2.65
CKLF-202ENST00000345436 TARBP1Q13395 1621 aaKnown RBP31.63■■■□□ 2.65
CKLF-202ENST00000345436 EIF4G3O43432 1585 aaKnown RBP31.62■■■□□ 2.65
CKLF-202ENST00000345436 RAD54L2Q9Y4B4 1467 aa31.56■■■□□ 2.64
CKLF-202ENST00000345436 FGD5Q6ZNL6 1462 aa31.55■■■□□ 2.64
CKLF-202ENST00000345436 FBLN2P98095 1184 aa31.53■■■□□ 2.64
CKLF-202ENST00000345436 CUX1P39880 1505 aa31.53■■■□□ 2.64
CKLF-202ENST00000345436 TDRD9Q8NDG6 1382 aaKnown RBP31.53■■■□□ 2.64
CKLF-202ENST00000345436 WDR97A6NE52 1622 aa31.47■■■□□ 2.63
CKLF-202ENST00000345436 CHMP7Q8WUX9 453 aaPredicted RBP31.37■■■□□ 2.61
CKLF-202ENST00000345436 GRIN2BQ13224 1484 aa31.34■■■□□ 2.61
CKLF-202ENST00000345436 MAGI1Q96QZ7 1491 aaPredicted RBP31.31■■■□□ 2.6
CKLF-202ENST00000345436 SNAPC4Q5SXM2 1469 aa31.3■■■□□ 2.6
CKLF-202ENST00000345436 WRNQ14191 1432 aaPredicted RBP eCLIP31.29■■■□□ 2.6
CKLF-202ENST00000345436 CHD1O14646 1710 aa31.28■■■□□ 2.6
CKLF-202ENST00000345436 RIMBP3CA6NJZ7 1639 aa31.27■■■□□ 2.6
CKLF-202ENST00000345436 RIMBP3BA6NNM3 1639 aa31.27■■■□□ 2.6
CKLF-202ENST00000345436 RIMBP3Q9UFD9 1639 aa31.27■■■□□ 2.6
CKLF-202ENST00000345436 GAPVD1Q14C86 1478 aa31.27■■■□□ 2.6
CKLF-202ENST00000345436 ARHGEF11O15085 1522 aa31.25■■■□□ 2.59
CKLF-202ENST00000345436 ABCA10Q8WWZ4 1543 aa31.24■■■□□ 2.59
CKLF-202ENST00000345436 SYNJ2O15056 1496 aa31.18■■■□□ 2.58
CKLF-202ENST00000345436 CYB5RLQ6IPT4 315 aa31.16■■■□□ 2.58
CKLF-202ENST00000345436 TOP2BQ02880 1626 aa31.13■■■□□ 2.57
CKLF-202ENST00000345436 SYNJ1O43426 1573 aa31.13■■■□□ 2.57
CKLF-202ENST00000345436 BIVM-ERCC5R4GMW8 1640 aa31.09■■■□□ 2.57
CKLF-202ENST00000345436 ABCA5Q8WWZ7 1642 aa31.06■■■□□ 2.56
CKLF-202ENST00000345436 PBRM1Q86U86 1689 aa31.05■■■□□ 2.56
CKLF-202ENST00000345436 CLASP1Q7Z460 1538 aa30.98■■■□□ 2.55
CKLF-202ENST00000345436 ARAP1Q96P48 1450 aa30.94■■■□□ 2.54
CKLF-202ENST00000345436 FHAD1B1AJZ9 1412 aa30.91■■■□□ 2.54
CKLF-202ENST00000345436 GRIN2AQ12879 1464 aa30.89■■■□□ 2.53
CKLF-202ENST00000345436 ERICH3Q5RHP9 1530 aa30.88■■■□□ 2.53
CKLF-202ENST00000345436 ADAMTS12P58397 1594 aa30.83■■■□□ 2.53
CKLF-202ENST00000345436 TRHP20396 242 aaPredicted RBP30.78■■■□□ 2.52
CKLF-202ENST00000345436 NUP160Q12769 1436 aa30.76■■■□□ 2.51
CKLF-202ENST00000345436 KIF27Q86VH2 1401 aa30.71■■■□□ 2.51
CKLF-202ENST00000345436 CEP170Q5SW79 1584 aa30.66■■■□□ 2.5
CKLF-202ENST00000345436 JPH4Q96JJ6 628 aa30.6■■■□□ 2.49
CKLF-202ENST00000345436 IGF1RP08069 1367 aa30.59■■■□□ 2.49
CKLF-202ENST00000345436 PRG4Q92954 1404 aaPredicted RBP30.5■■■□□ 2.47
CKLF-202ENST00000345436 SHROOM2Q13796 1616 aa30.5■■■□□ 2.47
CKLF-202ENST00000345436 CUL7Q14999 1698 aa30.46■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms