RNA–Protein interactions for RNA: ENST00000571272.5

SCARF1-205, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCARF1, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-205ENST00000571272 NISCHQ9Y2I1 1504 aa35.08■■■■□ 3.21
SCARF1-205ENST00000571272 SHROOM4Q9ULL8 1493 aa30.5■■■□□ 2.47
SCARF1-205ENST00000571272 SUPT5HO00267 1087 aaKnown RBP30.09■■■□□ 2.41
SCARF1-205ENST00000571272 ZCCHC6Q5VYS8 1495 aaKnown RBP29.71■■■□□ 2.35
SCARF1-205ENST00000571272 CCDC180Q9P1Z9 1646 aa29.48■■■□□ 2.31
SCARF1-205ENST00000571272 DCAF8L2P0C7V8 631 aa29.39■■■□□ 2.3
SCARF1-205ENST00000571272 CHIC1Q5VXU3 224 aa29.3■■■□□ 2.28
SCARF1-205ENST00000571272 MYO15BQ96JP2 1530 aa29.27■■■□□ 2.28
SCARF1-205ENST00000571272 HRCP23327 699 aa29■■■□□ 2.23
SCARF1-205ENST00000571272 PCGF6Q9BYE7 350 aa28.88■■■□□ 2.21
SCARF1-205ENST00000571272 DCAF1Q9Y4B6 1507 aa28.62■■■□□ 2.17
SCARF1-205ENST00000571272 LOC105371045A0A1W2PR82 267 aa28.58■■■□□ 2.17
SCARF1-205ENST00000571272 PPARGC1BQ86YN6 1023 aaKnown RBP28.51■■■□□ 2.15
SCARF1-205ENST00000571272 TRIM26Q12899 539 aaPredicted RBP28.1■■■□□ 2.09
SCARF1-205ENST00000571272 ABCC9O60706 1549 aa28.08■■■□□ 2.09
SCARF1-205ENST00000571272 RSF1Q96T23 1441 aaPredicted RBP27.97■■■□□ 2.07
SCARF1-205ENST00000571272 SCRIBQ14160 1630 aa27.96■■■□□ 2.07
SCARF1-205ENST00000571272 TRIM41Q8WV44 630 aa27.91■■■□□ 2.06
SCARF1-205ENST00000571272 FAM9AQ8IZU1 332 aaPredicted RBP27.85■■■□□ 2.05
SCARF1-205ENST00000571272 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
SCARF1-205ENST00000571272 EHMT2Q96KQ7 1210 aa27.72■■■□□ 2.03
SCARF1-205ENST00000571272 ZEB1P37275 1124 aaPredicted RBP27.58■■■□□ 2
SCARF1-205ENST00000571272 CECR2Q9BXF3 1484 aa27.47■■□□□ 1.99
SCARF1-205ENST00000571272 MROH2BQ7Z745 1585 aa27.36■■□□□ 1.97
SCARF1-205ENST00000571272 NACADO15069 1562 aa27.25■■□□□ 1.95
SCARF1-205ENST00000571272 WIZO95785 1651 aa27.24■■□□□ 1.95
SCARF1-205ENST00000571272 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.05■■□□□ 1.92
SCARF1-205ENST00000571272 SCAF1Q9H7N4 1312 aaKnown RBP27.01■■□□□ 1.91
SCARF1-205ENST00000571272 BAZ1AQ9NRL2 1556 aaPredicted RBP26.98■■□□□ 1.91
SCARF1-205ENST00000571272 CCER1Q8TC90 406 aaPredicted RBP26.96■■□□□ 1.91
SCARF1-205ENST00000571272 TTBK1Q5TCY1 1321 aaPredicted RBP26.9■■□□□ 1.9
SCARF1-205ENST00000571272 EIF4G1Q04637 1599 aaKnown RBP26.88■■□□□ 1.89
SCARF1-205ENST00000571272 ABCC8Q09428 1581 aa26.82■■□□□ 1.88
SCARF1-205ENST00000571272 CCDC88BA6NC98 1476 aa26.79■■□□□ 1.88
SCARF1-205ENST00000571272 TOP2AP11388 1531 aaKnown RBP26.71■■□□□ 1.87
SCARF1-205ENST00000571272 PELP1Q8IZL8 1130 aaKnown RBP26.69■■□□□ 1.86
SCARF1-205ENST00000571272 SOGA1O94964 1423 aa26.66■■□□□ 1.86
SCARF1-205ENST00000571272 CEP162Q5TB80 1403 aa26.66■■□□□ 1.86
SCARF1-205ENST00000571272 SMARCA4P51532 1647 aa26.62■■□□□ 1.85
SCARF1-205ENST00000571272 WRNQ14191 1432 aaPredicted RBP eCLIP26.62■■□□□ 1.85
SCARF1-205ENST00000571272 SMARCA2P51531 1590 aa26.61■■□□□ 1.85
SCARF1-205ENST00000571272 DIEXFQ68CQ4 756 aaKnown RBP26.6■■□□□ 1.85
SCARF1-205ENST00000571272 ACIN1Q9UKV3 1341 aaKnown RBP26.59■■□□□ 1.85
SCARF1-205ENST00000571272 NEUROD1Q13562 356 aa26.59■■□□□ 1.85
SCARF1-205ENST00000571272 UBTFP17480 764 aaKnown RBP26.58■■□□□ 1.85
SCARF1-205ENST00000571272 TNIKQ9UKE5 1360 aa26.54■■□□□ 1.84
SCARF1-205ENST00000571272 CSRNP3Q8WYN3 585 aa26.54■■□□□ 1.84
SCARF1-205ENST00000571272 RUSC2Q8N2Y8 1516 aa26.53■■□□□ 1.84
SCARF1-205ENST00000571272 EEA1Q15075 1411 aa26.39■■□□□ 1.82
SCARF1-205ENST00000571272 UNC13AQ9UPW8 1703 aa26.39■■□□□ 1.82
SCARF1-205ENST00000571272 CENPBP07199 599 aaPredicted RBP26.36■■□□□ 1.81
SCARF1-205ENST00000571272 GTF3C3Q9Y5Q9 886 aa26.36■■□□□ 1.81
SCARF1-205ENST00000571272 PABPN1Q86U42 306 aaKnown RBP eCLIP26.35■■□□□ 1.81
SCARF1-205ENST00000571272 GOLGA3Q08378 1498 aa26.32■■□□□ 1.8
SCARF1-205ENST00000571272 ZNF316A6NFI3 1004 aaPredicted RBP26.27■■□□□ 1.8
SCARF1-205ENST00000571272 HNRNPUL2Q1KMD3 747 aaKnown RBP26.25■■□□□ 1.79
SCARF1-205ENST00000571272 YTHDC1Q96MU7 727 aaKnown RBP26.13■■□□□ 1.77
SCARF1-205ENST00000571272 CEP164Q9UPV0 1460 aa26.12■■□□□ 1.77
SCARF1-205ENST00000571272 RANGAP1P46060 587 aaPredicted RBP26.11■■□□□ 1.77
SCARF1-205ENST00000571272 SYNJ1O43426 1573 aa26.11■■□□□ 1.77
SCARF1-205ENST00000571272 CLIP1P30622 1438 aa26.1■■□□□ 1.77
SCARF1-205ENST00000571272 BICRAQ9NZM4 1560 aa26.07■■□□□ 1.76
SCARF1-205ENST00000571272 APLP2Q06481 763 aa26.02■■□□□ 1.76
SCARF1-205ENST00000571272 KIF21BO75037 1637 aa26.01■■□□□ 1.75
SCARF1-205ENST00000571272 MIER1Q8N108 512 aa26.01■■□□□ 1.75
SCARF1-205ENST00000571272 PEG3Q9GZU2 1588 aa25.99■■□□□ 1.75
SCARF1-205ENST00000571272 VPS8Q8N3P4 1428 aa25.99■■□□□ 1.75
SCARF1-205ENST00000571272 RAPGEF2Q9Y4G8 1499 aa25.96■■□□□ 1.75
SCARF1-205ENST00000571272 ATAD2BQ9ULI0 1458 aa25.9■■□□□ 1.74
SCARF1-205ENST00000571272 BAZ1BQ9UIG0 1483 aaKnown RBP25.87■■□□□ 1.73
SCARF1-205ENST00000571272 TOP2BQ02880 1626 aa25.68■■□□□ 1.7
SCARF1-205ENST00000571272 KANK4Q5T7N3 995 aaPredicted RBP25.66■■□□□ 1.7
SCARF1-205ENST00000571272 DHX57Q6P158 1386 aaKnown RBP25.62■■□□□ 1.69
SCARF1-205ENST00000571272 ARAP1Q96P48 1450 aa25.59■■□□□ 1.69
SCARF1-205ENST00000571272 PRXQ9BXM0 1461 aa25.57■■□□□ 1.68
SCARF1-205ENST00000571272 CLSPNQ9HAW4 1339 aa25.55■■□□□ 1.68
SCARF1-205ENST00000571272 BIVM-ERCC5R4GMW8 1640 aa25.53■■□□□ 1.68
SCARF1-205ENST00000571272 ERICH3Q5RHP9 1530 aa25.53■■□□□ 1.68
SCARF1-205ENST00000571272 ITGAEP38570 1179 aa25.46■■□□□ 1.67
SCARF1-205ENST00000571272 CUX1P39880 1505 aa25.42■■□□□ 1.66
SCARF1-205ENST00000571272 KIF27Q86VH2 1401 aa25.41■■□□□ 1.66
SCARF1-205ENST00000571272 RRBP1Q9P2E9 1410 aaKnown RBP25.4■■□□□ 1.66
SCARF1-205ENST00000571272 MYT1Q01538 1121 aa25.37■■□□□ 1.65
SCARF1-205ENST00000571272 CCNB3Q8WWL7 1395 aa25.36■■□□□ 1.65
SCARF1-205ENST00000571272 ARHGAP35Q9NRY4 1499 aa25.33■■□□□ 1.65
SCARF1-205ENST00000571272 NCAPD3P42695 1498 aa25.28■■□□□ 1.64
SCARF1-205ENST00000571272 SUPT16HQ9Y5B9 1047 aaKnown RBP25.27■■□□□ 1.64
SCARF1-205ENST00000571272 CUX2O14529 1486 aa25.24■■□□□ 1.63
SCARF1-205ENST00000571272 HMGXB3Q12766 1538 aa25.24■■□□□ 1.63
SCARF1-205ENST00000571272 CFTRP13569 1480 aa25.21■■□□□ 1.63
SCARF1-205ENST00000571272 RAB3GAP2Q9H2M9 1393 aa25.2■■□□□ 1.63
SCARF1-205ENST00000571272 KCNH8Q96L42 1107 aa25.17■■□□□ 1.62
SCARF1-205ENST00000571272 IGF1RP08069 1367 aa25.14■■□□□ 1.62
SCARF1-205ENST00000571272 MAPKBP1O60336 1514 aa25.09■■□□□ 1.61
SCARF1-205ENST00000571272 FAM50AQ14320 339 aaKnown RBP25.08■■□□□ 1.61
SCARF1-205ENST00000571272 SIN3AQ96ST3 1273 aa25.07■■□□□ 1.6
SCARF1-205ENST00000571272 TIAM1Q13009 1591 aa25.06■■□□□ 1.6
SCARF1-205ENST00000571272 P3H3Q8IVL6 736 aa25.06■■□□□ 1.6
SCARF1-205ENST00000571272 ATP1B4Q9UN42 357 aaPredicted RBP25.06■■□□□ 1.6
SCARF1-205ENST00000571272 CARMIL1Q5VZK9 1371 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms