RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 NISCHQ9Y2I1 1504 aa35.9■■■■□ 3.34
COL9A1-201ENST00000320755 SHROOM4Q9ULL8 1493 aa31.04■■■□□ 2.56
COL9A1-201ENST00000320755 SUPT5HO00267 1087 aaKnown RBP30.46■■■□□ 2.47
COL9A1-201ENST00000320755 DCAF8L2P0C7V8 631 aa30.39■■■□□ 2.46
COL9A1-201ENST00000320755 CCDC180Q9P1Z9 1646 aa30.31■■■□□ 2.44
COL9A1-201ENST00000320755 ZCCHC6Q5VYS8 1495 aaKnown RBP30.3■■■□□ 2.44
COL9A1-201ENST00000320755 CHIC1Q5VXU3 224 aa29.39■■■□□ 2.3
COL9A1-201ENST00000320755 DCAF1Q9Y4B6 1507 aa29.24■■■□□ 2.27
COL9A1-201ENST00000320755 MYO15BQ96JP2 1530 aa29.19■■■□□ 2.26
COL9A1-201ENST00000320755 SCRIBQ14160 1630 aa28.74■■■□□ 2.19
COL9A1-201ENST00000320755 LOC105371045A0A1W2PR82 267 aa28.7■■■□□ 2.18
COL9A1-201ENST00000320755 PCGF6Q9BYE7 350 aa28.62■■■□□ 2.17
COL9A1-201ENST00000320755 ABCC9O60706 1549 aa28.57■■■□□ 2.16
COL9A1-201ENST00000320755 RSF1Q96T23 1441 aaPredicted RBP28.48■■■□□ 2.15
COL9A1-201ENST00000320755 HRCP23327 699 aa28.39■■■□□ 2.14
COL9A1-201ENST00000320755 TRIM41Q8WV44 630 aa28.26■■■□□ 2.11
COL9A1-201ENST00000320755 FAM9AQ8IZU1 332 aaPredicted RBP28.22■■■□□ 2.11
COL9A1-201ENST00000320755 RB1CC1Q8TDY2 1594 aa28.16■■■□□ 2.1
COL9A1-201ENST00000320755 CECR2Q9BXF3 1484 aa28.16■■■□□ 2.1
COL9A1-201ENST00000320755 NACADO15069 1562 aa28.15■■■□□ 2.1
COL9A1-201ENST00000320755 EHMT2Q96KQ7 1210 aa28.15■■■□□ 2.1
COL9A1-201ENST00000320755 PPARGC1BQ86YN6 1023 aaKnown RBP28.03■■■□□ 2.08
COL9A1-201ENST00000320755 MROH2BQ7Z745 1585 aa27.99■■■□□ 2.07
COL9A1-201ENST00000320755 TRIM26Q12899 539 aaPredicted RBP27.9■■■□□ 2.06
COL9A1-201ENST00000320755 WIZO95785 1651 aa27.83■■■□□ 2.05
COL9A1-201ENST00000320755 BAZ1AQ9NRL2 1556 aaPredicted RBP27.55■■■□□ 2
COL9A1-201ENST00000320755 PABPN1Q86U42 306 aaKnown RBP eCLIP27.48■■□□□ 1.99
COL9A1-201ENST00000320755 SMARCA4P51532 1647 aa27.32■■□□□ 1.96
COL9A1-201ENST00000320755 CCDC88BA6NC98 1476 aa27.3■■□□□ 1.96
COL9A1-201ENST00000320755 ABCC8Q09428 1581 aa27.29■■□□□ 1.96
COL9A1-201ENST00000320755 UNC13AQ9UPW8 1703 aa27.28■■□□□ 1.96
COL9A1-201ENST00000320755 TOP2AP11388 1531 aaKnown RBP27.28■■□□□ 1.96
COL9A1-201ENST00000320755 EIF4G1Q04637 1599 aaKnown RBP27.2■■□□□ 1.95
COL9A1-201ENST00000320755 ZEB1P37275 1124 aaPredicted RBP27.19■■□□□ 1.94
COL9A1-201ENST00000320755 TTBK1Q5TCY1 1321 aaPredicted RBP27.19■■□□□ 1.94
COL9A1-201ENST00000320755 SMARCA2P51531 1590 aa27.16■■□□□ 1.94
COL9A1-201ENST00000320755 SOGA1O94964 1423 aa27.06■■□□□ 1.92
COL9A1-201ENST00000320755 UBTFP17480 764 aaKnown RBP27■■□□□ 1.91
COL9A1-201ENST00000320755 BICRAQ9NZM4 1560 aa27■■□□□ 1.91
COL9A1-201ENST00000320755 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.98■■□□□ 1.91
COL9A1-201ENST00000320755 CSRNP3Q8WYN3 585 aa26.94■■□□□ 1.9
COL9A1-201ENST00000320755 RUSC2Q8N2Y8 1516 aa26.93■■□□□ 1.9
COL9A1-201ENST00000320755 CCER1Q8TC90 406 aaPredicted RBP26.88■■□□□ 1.89
COL9A1-201ENST00000320755 CEP162Q5TB80 1403 aa26.87■■□□□ 1.89
COL9A1-201ENST00000320755 WRNQ14191 1432 aaPredicted RBP eCLIP26.79■■□□□ 1.88
COL9A1-201ENST00000320755 TNIKQ9UKE5 1360 aa26.76■■□□□ 1.87
COL9A1-201ENST00000320755 ATAD2BQ9ULI0 1458 aa26.7■■□□□ 1.87
COL9A1-201ENST00000320755 EEA1Q15075 1411 aa26.69■■□□□ 1.86
COL9A1-201ENST00000320755 RANGAP1P46060 587 aaPredicted RBP26.69■■□□□ 1.86
COL9A1-201ENST00000320755 BAZ1BQ9UIG0 1483 aaKnown RBP26.67■■□□□ 1.86
COL9A1-201ENST00000320755 PEG3Q9GZU2 1588 aa26.64■■□□□ 1.86
COL9A1-201ENST00000320755 GOLGA3Q08378 1498 aa26.61■■□□□ 1.85
COL9A1-201ENST00000320755 SYNJ1O43426 1573 aa26.59■■□□□ 1.85
COL9A1-201ENST00000320755 CEP164Q9UPV0 1460 aa26.45■■□□□ 1.82
COL9A1-201ENST00000320755 HNRNPUL2Q1KMD3 747 aaKnown RBP26.42■■□□□ 1.82
COL9A1-201ENST00000320755 CLIP1P30622 1438 aa26.4■■□□□ 1.82
COL9A1-201ENST00000320755 APLP2Q06481 763 aa26.36■■□□□ 1.81
COL9A1-201ENST00000320755 RAPGEF2Q9Y4G8 1499 aa26.36■■□□□ 1.81
COL9A1-201ENST00000320755 KIF21BO75037 1637 aa26.29■■□□□ 1.8
COL9A1-201ENST00000320755 DIEXFQ68CQ4 756 aaKnown RBP26.26■■□□□ 1.79
COL9A1-201ENST00000320755 VPS8Q8N3P4 1428 aa26.2■■□□□ 1.78
COL9A1-201ENST00000320755 SCAF1Q9H7N4 1312 aaKnown RBP26.2■■□□□ 1.78
COL9A1-201ENST00000320755 TOP2BQ02880 1626 aa26.18■■□□□ 1.78
COL9A1-201ENST00000320755 NCAPD3P42695 1498 aa26.12■■□□□ 1.77
COL9A1-201ENST00000320755 CUX1P39880 1505 aa26.03■■□□□ 1.76
COL9A1-201ENST00000320755 HMGXB3Q12766 1538 aa26.02■■□□□ 1.76
COL9A1-201ENST00000320755 ZNF316A6NFI3 1004 aaPredicted RBP26.02■■□□□ 1.76
COL9A1-201ENST00000320755 BIVM-ERCC5R4GMW8 1640 aa26.01■■□□□ 1.75
COL9A1-201ENST00000320755 NEUROD1Q13562 356 aa25.99■■□□□ 1.75
COL9A1-201ENST00000320755 PRXQ9BXM0 1461 aa25.97■■□□□ 1.75
COL9A1-201ENST00000320755 KANK4Q5T7N3 995 aaPredicted RBP25.96■■□□□ 1.75
COL9A1-201ENST00000320755 KIF27Q86VH2 1401 aa25.96■■□□□ 1.75
COL9A1-201ENST00000320755 ACIN1Q9UKV3 1341 aaKnown RBP25.94■■□□□ 1.74
COL9A1-201ENST00000320755 CFTRP13569 1480 aa25.93■■□□□ 1.74
COL9A1-201ENST00000320755 ARAP1Q96P48 1450 aa25.88■■□□□ 1.73
COL9A1-201ENST00000320755 ERICH3Q5RHP9 1530 aa25.87■■□□□ 1.73
COL9A1-201ENST00000320755 YTHDC1Q96MU7 727 aaKnown RBP25.83■■□□□ 1.73
COL9A1-201ENST00000320755 CENPBP07199 599 aaPredicted RBP25.83■■□□□ 1.73
COL9A1-201ENST00000320755 ITGAEP38570 1179 aa25.82■■□□□ 1.72
COL9A1-201ENST00000320755 CUX2O14529 1486 aa25.78■■□□□ 1.72
COL9A1-201ENST00000320755 GTF3C3Q9Y5Q9 886 aa25.74■■□□□ 1.71
COL9A1-201ENST00000320755 CADPSQ9ULU8 1353 aa25.74■■□□□ 1.71
COL9A1-201ENST00000320755 MIER1Q8N108 512 aa25.72■■□□□ 1.71
COL9A1-201ENST00000320755 IGF1RP08069 1367 aa25.71■■□□□ 1.71
COL9A1-201ENST00000320755 ARHGAP35Q9NRY4 1499 aa25.69■■□□□ 1.7
COL9A1-201ENST00000320755 P3H3Q8IVL6 736 aa25.67■■□□□ 1.7
COL9A1-201ENST00000320755 ATP1B4Q9UN42 357 aaPredicted RBP25.66■■□□□ 1.7
COL9A1-201ENST00000320755 CARMIL1Q5VZK9 1371 aa25.64■■□□□ 1.69
COL9A1-201ENST00000320755 FGD5Q6ZNL6 1462 aa25.62■■□□□ 1.69
COL9A1-201ENST00000320755 DHX57Q6P158 1386 aaKnown RBP25.62■■□□□ 1.69
COL9A1-201ENST00000320755 CCNB3Q8WWL7 1395 aa25.56■■□□□ 1.68
COL9A1-201ENST00000320755 CC2D2AQ9P2K1 1620 aa25.54■■□□□ 1.68
COL9A1-201ENST00000320755 RRBP1Q9P2E9 1410 aaKnown RBP25.52■■□□□ 1.68
COL9A1-201ENST00000320755 FANCD2Q9BXW9 1451 aa25.49■■□□□ 1.67
COL9A1-201ENST00000320755 PRDM2Q13029 1718 aa25.49■■□□□ 1.67
COL9A1-201ENST00000320755 CLSPNQ9HAW4 1339 aa25.47■■□□□ 1.67
COL9A1-201ENST00000320755 FAM50AQ14320 339 aaKnown RBP25.46■■□□□ 1.67
COL9A1-201ENST00000320755 RAD54L2Q9Y4B4 1467 aa25.46■■□□□ 1.67
COL9A1-201ENST00000320755 NESP48681 1621 aa25.42■■□□□ 1.66
COL9A1-201ENST00000320755 PELP1Q8IZL8 1130 aaKnown RBP25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms