RNA–Protein interactions for RNA: ENST00000508514.5

SKP2-204, Transcript of S-phase kinase associated protein 2, humanhuman

TSL 3 BASIC

Gene SKP2, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-204ENST00000508514 NISCHQ9Y2I1 1504 aa44.97■■■■■ 4.79
SKP2-204ENST00000508514 ABCC9O60706 1549 aa40.23■■■■■ 4.03
SKP2-204ENST00000508514 CCDC180Q9P1Z9 1646 aa40.19■■■■■ 4.02
SKP2-204ENST00000508514 RB1CC1Q8TDY2 1594 aa38.23■■■■□ 3.71
SKP2-204ENST00000508514 NACADO15069 1562 aa38.03■■■■□ 3.68
SKP2-204ENST00000508514 DCAF8L2P0C7V8 631 aa37.92■■■■□ 3.66
SKP2-204ENST00000508514 DNAJC5BQ9UF47 199 aa37.84■■■■□ 3.65
SKP2-204ENST00000508514 MYO15BQ96JP2 1530 aa37.56■■■■□ 3.6
SKP2-204ENST00000508514 PABPN1Q86U42 306 aaKnown RBP eCLIP37.54■■■■□ 3.6
SKP2-204ENST00000508514 UNC13AQ9UPW8 1703 aa37.41■■■■□ 3.58
SKP2-204ENST00000508514 ZCCHC6Q5VYS8 1495 aaKnown RBP37.28■■■■□ 3.56
SKP2-204ENST00000508514 BICRAQ9NZM4 1560 aa37.25■■■■□ 3.55
SKP2-204ENST00000508514 DCAF1Q9Y4B6 1507 aa37.11■■■■□ 3.53
SKP2-204ENST00000508514 SCRIBQ14160 1630 aa36.7■■■■□ 3.47
SKP2-204ENST00000508514 SHROOM4Q9ULL8 1493 aa36.61■■■■□ 3.45
SKP2-204ENST00000508514 CC2D2AQ9P2K1 1620 aa36.32■■■■□ 3.4
SKP2-204ENST00000508514 EIF4G1Q04637 1599 aaKnown RBP36.27■■■■□ 3.4
SKP2-204ENST00000508514 CECR2Q9BXF3 1484 aa36.21■■■■□ 3.39
SKP2-204ENST00000508514 NCAPD3P42695 1498 aa35.18■■■■□ 3.22
SKP2-204ENST00000508514 ATAD2BQ9ULI0 1458 aa35.09■■■■□ 3.21
SKP2-204ENST00000508514 SMARCA4P51532 1647 aa35.02■■■■□ 3.2
SKP2-204ENST00000508514 SMARCA2P51531 1590 aa34.9■■■■□ 3.18
SKP2-204ENST00000508514 HMGXB3Q12766 1538 aa34.85■■■■□ 3.17
SKP2-204ENST00000508514 BAZ1AQ9NRL2 1556 aaPredicted RBP34.83■■■■□ 3.17
SKP2-204ENST00000508514 PEG3Q9GZU2 1588 aa34.7■■■■□ 3.14
SKP2-204ENST00000508514 MROH2BQ7Z745 1585 aa34.69■■■■□ 3.14
SKP2-204ENST00000508514 BAZ1BQ9UIG0 1483 aaKnown RBP34.68■■■■□ 3.14
SKP2-204ENST00000508514 ERCC6Q03468 1493 aa34.65■■■■□ 3.14
SKP2-204ENST00000508514 NESP48681 1621 aa34.63■■■■□ 3.13
SKP2-204ENST00000508514 DNAJC5Q9H3Z4 198 aa34.57■■■■□ 3.12
SKP2-204ENST00000508514 CUX2O14529 1486 aa34.57■■■■□ 3.12
SKP2-204ENST00000508514 LAMC3Q9Y6N6 1575 aa34.28■■■■□ 3.08
SKP2-204ENST00000508514 WIZO95785 1651 aa34.24■■■■□ 3.07
SKP2-204ENST00000508514 THOC2Q8NI27 1593 aaKnown RBP34.19■■■■□ 3.06
SKP2-204ENST00000508514 CADPSQ9ULU8 1353 aa34.11■■■■□ 3.05
SKP2-204ENST00000508514 PDS5BQ9NTI5 1447 aa34.1■■■■□ 3.05
SKP2-204ENST00000508514 KIF21AQ7Z4S6 1674 aa34.08■■■■□ 3.05
SKP2-204ENST00000508514 RSF1Q96T23 1441 aaPredicted RBP34.02■■■■□ 3.04
SKP2-204ENST00000508514 MRC2Q9UBG0 1479 aa33.82■■■■□ 3
SKP2-204ENST00000508514 TOP2AP11388 1531 aaKnown RBP33.77■■■■□ 3
SKP2-204ENST00000508514 CFTRP13569 1480 aa33.75■■■□□ 2.99
SKP2-204ENST00000508514 WDR62O43379 1518 aa33.74■■■□□ 2.99
SKP2-204ENST00000508514 FANCD2Q9BXW9 1451 aa33.69■■■□□ 2.98
SKP2-204ENST00000508514 CEP164Q9UPV0 1460 aa33.68■■■□□ 2.98
SKP2-204ENST00000508514 CCDC88BA6NC98 1476 aa33.47■■■□□ 2.95
SKP2-204ENST00000508514 URB2Q14146 1524 aaKnown RBP33.46■■■□□ 2.95
SKP2-204ENST00000508514 PRDM2Q13029 1718 aa33.25■■■□□ 2.91
SKP2-204ENST00000508514 TOPBP1Q92547 1522 aa33.08■■■□□ 2.89
SKP2-204ENST00000508514 OSCARQ8IYS5 282 aa33.07■■■□□ 2.88
SKP2-204ENST00000508514 ZNF608Q9ULD9 1512 aaPredicted RBP33.05■■■□□ 2.88
SKP2-204ENST00000508514 TRIM41Q8WV44 630 aa33.03■■■□□ 2.88
SKP2-204ENST00000508514 IFT140Q96RY7 1462 aa33.02■■■□□ 2.88
SKP2-204ENST00000508514 ABCC8Q09428 1581 aa32.93■■■□□ 2.86
SKP2-204ENST00000508514 DNMBPQ6XZF7 1577 aa32.92■■■□□ 2.86
SKP2-204ENST00000508514 TARBP1Q13395 1621 aaKnown RBP32.78■■■□□ 2.84
SKP2-204ENST00000508514 EIF4G3O43432 1585 aaKnown RBP32.77■■■□□ 2.84
SKP2-204ENST00000508514 AQRO60306 1485 aaKnown RBP eCLIP32.75■■■□□ 2.834e-6■■■■□ 24.8
SKP2-204ENST00000508514 POLA1P09884 1462 aaPredicted RBP32.75■■■□□ 2.83
SKP2-204ENST00000508514 RAD54L2Q9Y4B4 1467 aa32.67■■■□□ 2.82
SKP2-204ENST00000508514 SOGA1O94964 1423 aa32.6■■■□□ 2.81
SKP2-204ENST00000508514 RIMBP3CA6NJZ7 1639 aa32.59■■■□□ 2.81
SKP2-204ENST00000508514 RIMBP3BA6NNM3 1639 aa32.59■■■□□ 2.81
SKP2-204ENST00000508514 RIMBP3Q9UFD9 1639 aa32.59■■■□□ 2.81
SKP2-204ENST00000508514 TDRD9Q8NDG6 1382 aaKnown RBP32.58■■■□□ 2.81
SKP2-204ENST00000508514 CUX1P39880 1505 aa32.57■■■□□ 2.8
SKP2-204ENST00000508514 FGD5Q6ZNL6 1462 aa32.55■■■□□ 2.8
SKP2-204ENST00000508514 SUPT5HO00267 1087 aaKnown RBP32.55■■■□□ 2.8
SKP2-204ENST00000508514 ARHGEF11O15085 1522 aa32.51■■■□□ 2.8
SKP2-204ENST00000508514 CHD1O14646 1710 aa32.48■■■□□ 2.79
SKP2-204ENST00000508514 FBLN2P98095 1184 aa32.46■■■□□ 2.79
SKP2-204ENST00000508514 SNAPC4Q5SXM2 1469 aa32.36■■■□□ 2.77
SKP2-204ENST00000508514 WDR97A6NE52 1622 aa32.33■■■□□ 2.77
SKP2-204ENST00000508514 CYB5RLQ6IPT4 315 aa32.32■■■□□ 2.76
SKP2-204ENST00000508514 GRIN2BQ13224 1484 aa32.28■■■□□ 2.76
SKP2-204ENST00000508514 MAGI1Q96QZ7 1491 aaPredicted RBP32.25■■■□□ 2.75
SKP2-204ENST00000508514 ARAP1Q96P48 1450 aa32.24■■■□□ 2.75
SKP2-204ENST00000508514 CHMP7Q8WUX9 453 aaPredicted RBP32.23■■■□□ 2.75
SKP2-204ENST00000508514 GAPVD1Q14C86 1478 aa32.19■■■□□ 2.74
SKP2-204ENST00000508514 CLASP1Q7Z460 1538 aa32.19■■■□□ 2.74
SKP2-204ENST00000508514 ABCA10Q8WWZ4 1543 aa32.19■■■□□ 2.74
SKP2-204ENST00000508514 SYNJ2O15056 1496 aa32.16■■■□□ 2.74
SKP2-204ENST00000508514 ABCA5Q8WWZ7 1642 aa32.11■■■□□ 2.73
SKP2-204ENST00000508514 PBRM1Q86U86 1689 aa32.09■■■□□ 2.73
SKP2-204ENST00000508514 SYNJ1O43426 1573 aa32.08■■■□□ 2.73
SKP2-204ENST00000508514 WRNQ14191 1432 aaPredicted RBP eCLIP32.05■■■□□ 2.72
SKP2-204ENST00000508514 TOP2BQ02880 1626 aa32.01■■■□□ 2.72
SKP2-204ENST00000508514 BIVM-ERCC5R4GMW8 1640 aa32■■■□□ 2.71
SKP2-204ENST00000508514 GRIN2AQ12879 1464 aa31.87■■■□□ 2.69
SKP2-204ENST00000508514 TRHP20396 242 aaPredicted RBP31.86■■■□□ 2.69
SKP2-204ENST00000508514 ADAMTS12P58397 1594 aa31.85■■■□□ 2.69
SKP2-204ENST00000508514 NUP160Q12769 1436 aa31.8■■■□□ 2.68
SKP2-204ENST00000508514 FHAD1B1AJZ9 1412 aa31.78■■■□□ 2.68
SKP2-204ENST00000508514 CEP170Q5SW79 1584 aa31.77■■■□□ 2.68
SKP2-204ENST00000508514 ERCC6L2Q5T890 1561 aa31.76■■■□□ 2.67
SKP2-204ENST00000508514 ERICH3Q5RHP9 1530 aa31.75■■■□□ 2.67
SKP2-204ENST00000508514 SHROOM2Q13796 1616 aa31.6■■■□□ 2.65
SKP2-204ENST00000508514 JPH4Q96JJ6 628 aa31.5■■■□□ 2.63
SKP2-204ENST00000508514 IGF1RP08069 1367 aa31.48■■■□□ 2.63
SKP2-204ENST00000508514 PRG4Q92954 1404 aaPredicted RBP31.47■■■□□ 2.63
SKP2-204ENST00000508514 RUSC2Q8N2Y8 1516 aa31.39■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms