RNA–Protein interactions for RNA: ENST00000539061.5

C2CD3-213, Transcript of C2 calcium dependent domain containing 3, humanhuman

TSL 2 BASIC

Gene C2CD3, Length 2,722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C2CD3-213ENST00000539061 NISCHQ9Y2I1 1504 aa33.47■■■□□ 2.95
C2CD3-213ENST00000539061 SHROOM4Q9ULL8 1493 aa29.15■■■□□ 2.26
C2CD3-213ENST00000539061 SUPT5HO00267 1087 aaKnown RBP28.98■■■□□ 2.23
C2CD3-213ENST00000539061 HRCP23327 699 aa28.96■■■□□ 2.23
C2CD3-213ENST00000539061 MYO15BQ96JP2 1530 aa28.54■■■□□ 2.16
C2CD3-213ENST00000539061 CHIC1Q5VXU3 224 aa28.52■■■□□ 2.16
C2CD3-213ENST00000539061 CCDC180Q9P1Z9 1646 aa28.49■■■□□ 2.15
C2CD3-213ENST00000539061 ZCCHC6Q5VYS8 1495 aaKnown RBP28.44■■■□□ 2.14
C2CD3-213ENST00000539061 PCGF6Q9BYE7 350 aa28.42■■■□□ 2.14
C2CD3-213ENST00000539061 PPARGC1BQ86YN6 1023 aaKnown RBP28.19■■■□□ 2.1
C2CD3-213ENST00000539061 DCAF1Q9Y4B6 1507 aa28.06■■■□□ 2.08
C2CD3-213ENST00000539061 TRIM26Q12899 539 aaPredicted RBP27.73■■■□□ 2.03
C2CD3-213ENST00000539061 LOC105371045A0A1W2PR82 267 aa27.72■■■□□ 2.03
C2CD3-213ENST00000539061 DCAF8L2P0C7V8 631 aa27.67■■■□□ 2.02
C2CD3-213ENST00000539061 PELP1Q8IZL8 1130 aaKnown RBP27.61■■■□□ 2.01
C2CD3-213ENST00000539061 ZEB1P37275 1124 aaPredicted RBP27.49■■□□□ 1.99
C2CD3-213ENST00000539061 ABCC9O60706 1549 aa27.28■■□□□ 1.96
C2CD3-213ENST00000539061 SCAF1Q9H7N4 1312 aaKnown RBP27.13■■□□□ 1.93
C2CD3-213ENST00000539061 TRIM41Q8WV44 630 aa26.94■■□□□ 1.9
C2CD3-213ENST00000539061 RSF1Q96T23 1441 aaPredicted RBP26.81■■□□□ 1.88
C2CD3-213ENST00000539061 FAM9AQ8IZU1 332 aaPredicted RBP26.75■■□□□ 1.87
C2CD3-213ENST00000539061 ACIN1Q9UKV3 1341 aaKnown RBP26.65■■□□□ 1.86
C2CD3-213ENST00000539061 RB1CC1Q8TDY2 1594 aa26.61■■□□□ 1.85
C2CD3-213ENST00000539061 NACADO15069 1562 aa26.59■■□□□ 1.85
C2CD3-213ENST00000539061 SCRIBQ14160 1630 aa26.52■■□□□ 1.84
C2CD3-213ENST00000539061 NEUROD1Q13562 356 aa26.52■■□□□ 1.84
C2CD3-213ENST00000539061 EHMT2Q96KQ7 1210 aa26.5■■□□□ 1.83
C2CD3-213ENST00000539061 MYT1Q01538 1121 aa26.49■■□□□ 1.83
C2CD3-213ENST00000539061 CCER1Q8TC90 406 aaPredicted RBP26.45■■□□□ 1.83
C2CD3-213ENST00000539061 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.44■■□□□ 1.82
C2CD3-213ENST00000539061 CENPBP07199 599 aaPredicted RBP26.42■■□□□ 1.82
C2CD3-213ENST00000539061 DIEXFQ68CQ4 756 aaKnown RBP26.36■■□□□ 1.81
C2CD3-213ENST00000539061 GTF3C3Q9Y5Q9 886 aa26.36■■□□□ 1.81
C2CD3-213ENST00000539061 CECR2Q9BXF3 1484 aa26.08■■□□□ 1.77
C2CD3-213ENST00000539061 MROH2BQ7Z745 1585 aa26.06■■□□□ 1.76
C2CD3-213ENST00000539061 WRNQ14191 1432 aaPredicted RBP eCLIP26.03■■□□□ 1.76
C2CD3-213ENST00000539061 ZNF316A6NFI3 1004 aaPredicted RBP25.97■■□□□ 1.75
C2CD3-213ENST00000539061 WIZO95785 1651 aa25.94■■□□□ 1.74
C2CD3-213ENST00000539061 UNC13AQ9UPW8 1703 aa25.93■■□□□ 1.74
C2CD3-213ENST00000539061 EIF4G1Q04637 1599 aaKnown RBP25.88■■□□□ 1.73
C2CD3-213ENST00000539061 PABPN1Q86U42 306 aaKnown RBP eCLIP25.87■■□□□ 1.73
C2CD3-213ENST00000539061 TTBK1Q5TCY1 1321 aaPredicted RBP25.85■■□□□ 1.73
C2CD3-213ENST00000539061 CEP162Q5TB80 1403 aa25.85■■□□□ 1.73
C2CD3-213ENST00000539061 BAZ1AQ9NRL2 1556 aaPredicted RBP25.84■■□□□ 1.73
C2CD3-213ENST00000539061 TNIKQ9UKE5 1360 aa25.77■■□□□ 1.72
C2CD3-213ENST00000539061 YTHDC1Q96MU7 727 aaKnown RBP25.76■■□□□ 1.71
C2CD3-213ENST00000539061 CCDC88BA6NC98 1476 aa25.71■■□□□ 1.71
C2CD3-213ENST00000539061 BICRAQ9NZM4 1560 aa25.68■■□□□ 1.7
C2CD3-213ENST00000539061 MIER1Q8N108 512 aa25.67■■□□□ 1.7
C2CD3-213ENST00000539061 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
C2CD3-213ENST00000539061 EEA1Q15075 1411 aa25.62■■□□□ 1.69
C2CD3-213ENST00000539061 SOGA1O94964 1423 aa25.6■■□□□ 1.69
C2CD3-213ENST00000539061 CSRNP3Q8WYN3 585 aa25.58■■□□□ 1.69
C2CD3-213ENST00000539061 UBTFP17480 764 aaKnown RBP25.57■■□□□ 1.68
C2CD3-213ENST00000539061 TOP2AP11388 1531 aaKnown RBP25.54■■□□□ 1.68
C2CD3-213ENST00000539061 GOLGA3Q08378 1498 aa25.47■■□□□ 1.67
C2CD3-213ENST00000539061 HNRNPUL2Q1KMD3 747 aaKnown RBP25.44■■□□□ 1.66
C2CD3-213ENST00000539061 SMARCA2P51531 1590 aa25.43■■□□□ 1.66
C2CD3-213ENST00000539061 RUSC2Q8N2Y8 1516 aa25.42■■□□□ 1.66
C2CD3-213ENST00000539061 CLSPNQ9HAW4 1339 aa25.38■■□□□ 1.65
C2CD3-213ENST00000539061 SMARCA4P51532 1647 aa25.31■■□□□ 1.64
C2CD3-213ENST00000539061 CEP164Q9UPV0 1460 aa25.24■■□□□ 1.63
C2CD3-213ENST00000539061 CLIP1P30622 1438 aa25.22■■□□□ 1.63
C2CD3-213ENST00000539061 APLP2Q06481 763 aa25.2■■□□□ 1.62
C2CD3-213ENST00000539061 VPS8Q8N3P4 1428 aa25.2■■□□□ 1.62
C2CD3-213ENST00000539061 SUPT16HQ9Y5B9 1047 aaKnown RBP25.2■■□□□ 1.62
C2CD3-213ENST00000539061 KIF21BO75037 1637 aa25.17■■□□□ 1.62
C2CD3-213ENST00000539061 BAZ1BQ9UIG0 1483 aaKnown RBP25.06■■□□□ 1.6
C2CD3-213ENST00000539061 DHX57Q6P158 1386 aaKnown RBP25.03■■□□□ 1.6
C2CD3-213ENST00000539061 TSHZ2Q9NRE2 1034 aa25■■□□□ 1.59
C2CD3-213ENST00000539061 SYNJ1O43426 1573 aa24.96■■□□□ 1.59
C2CD3-213ENST00000539061 ANP32EQ9BTT0 268 aa24.95■■□□□ 1.58
C2CD3-213ENST00000539061 RAPGEF2Q9Y4G8 1499 aa24.93■■□□□ 1.58
C2CD3-213ENST00000539061 ATAD2BQ9ULI0 1458 aa24.91■■□□□ 1.58
C2CD3-213ENST00000539061 PEG3Q9GZU2 1588 aa24.85■■□□□ 1.57
C2CD3-213ENST00000539061 RANGAP1P46060 587 aaPredicted RBP24.85■■□□□ 1.57
C2CD3-213ENST00000539061 RRBP1Q9P2E9 1410 aaKnown RBP24.72■■□□□ 1.55
C2CD3-213ENST00000539061 KANK4Q5T7N3 995 aaPredicted RBP24.7■■□□□ 1.55
C2CD3-213ENST00000539061 CUX2O14529 1486 aa24.7■■□□□ 1.55
C2CD3-213ENST00000539061 ARAP1Q96P48 1450 aa24.68■■□□□ 1.54
C2CD3-213ENST00000539061 ERICH3Q5RHP9 1530 aa24.65■■□□□ 1.54
C2CD3-213ENST00000539061 KCNH8Q96L42 1107 aa24.64■■□□□ 1.54
C2CD3-213ENST00000539061 NCAPD3P42695 1498 aa24.6■■□□□ 1.53
C2CD3-213ENST00000539061 CCNB3Q8WWL7 1395 aa24.6■■□□□ 1.53
C2CD3-213ENST00000539061 PRXQ9BXM0 1461 aa24.6■■□□□ 1.53
C2CD3-213ENST00000539061 BCL11AQ9H165 835 aa24.6■■□□□ 1.53
C2CD3-213ENST00000539061 TOP2BQ02880 1626 aa24.6■■□□□ 1.53
C2CD3-213ENST00000539061 BCANQ96GW7 911 aa24.59■■□□□ 1.53
C2CD3-213ENST00000539061 FKBP8Q14318 412 aa24.59■■□□□ 1.53
C2CD3-213ENST00000539061 CC2D2AQ9P2K1 1620 aa24.55■■□□□ 1.52
C2CD3-213ENST00000539061 HMGXB3Q12766 1538 aa24.51■■□□□ 1.51
C2CD3-213ENST00000539061 NEFLP07196 543 aa24.48■■□□□ 1.51
C2CD3-213ENST00000539061 RAB3GAP2Q9H2M9 1393 aa24.47■■□□□ 1.51
C2CD3-213ENST00000539061 ITGAEP38570 1179 aa24.47■■□□□ 1.51
C2CD3-213ENST00000539061 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
C2CD3-213ENST00000539061 MAPKBP1O60336 1514 aa24.46■■□□□ 1.51
C2CD3-213ENST00000539061 RBM19Q9Y4C8 960 aaKnown RBP24.46■■□□□ 1.51
C2CD3-213ENST00000539061 DDX10Q13206 875 aaKnown RBP24.45■■□□□ 1.5
C2CD3-213ENST00000539061 PPP1R15AO75807 674 aaPredicted RBP24.37■■□□□ 1.49
C2CD3-213ENST00000539061 CCER2I3L3R5 266 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms