Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
RPS28P62857 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC10.05□□□□□ -0.8
RPS28P62857 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC10.05□□□□□ -0.8
RPS28P62857 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
RPS28P62857 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC10.05□□□□□ -0.8
RPS28P62857 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC10.05□□□□□ -0.8
RPS28P62857 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
RPS28P62857 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC10.05□□□□□ -0.8
RPS28P62857 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC10.05□□□□□ -0.8
RPS28P62857 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
RPS28P62857 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
RPS28P62857 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
RPS28P62857 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
RPS28P62857 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
RPS28P62857 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC10.05□□□□□ -0.8
RPS28P62857 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 AMT-204ENST00000427987 1646 ntTSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC10.04□□□□□ -0.8
RPS28P62857 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 AC133963.1-201ENST00000504166 1679 ntBASIC10.04□□□□□ -0.8
RPS28P62857 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 AP001271.2-201ENST00000624018 1556 ntBASIC10.04□□□□□ -0.8
RPS28P62857 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC10.04□□□□□ -0.8
RPS28P62857 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
RPS28P62857 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 PCDHA3-202ENST00000532566 4594 ntBASIC10.04□□□□□ -0.8
RPS28P62857 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
RPS28P62857 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC10.04□□□□□ -0.8
RPS28P62857 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
RPS28P62857 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC10.03□□□□□ -0.8
RPS28P62857 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC10.03□□□□□ -0.8
RPS28P62857 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 RPUSD4-201ENST00000298317 2512 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
RPS28P62857 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
RPS28P62857 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
RPS28P62857 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
RPS28P62857 CALM3-209ENST00000597743 577 ntTSL 4 BASIC10.03□□□□□ -0.8
RPS28P62857 AP003680.1-201ENST00000598970 3660 ntBASIC10.03□□□□□ -0.8
RPS28P62857 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC10.03□□□□□ -0.8
RPS28P62857 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC10.03□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 435.4 ms