RNA–Protein interactions for RNA: ENST00000204961.4

EFNB1-201, Transcript of ephrin B1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EFNB1, Length 3,314 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EFNB1-201ENST00000204961 NISCHQ9Y2I1 1504 aa29.65■■■□□ 2.34
EFNB1-201ENST00000204961 SHROOM4Q9ULL8 1493 aa26.99■■□□□ 1.91
EFNB1-201ENST00000204961 SUPT5HO00267 1087 aaKnown RBP26.6■■□□□ 1.85
EFNB1-201ENST00000204961 DCAF8L2P0C7V8 631 aa26.54■■□□□ 1.84
EFNB1-201ENST00000204961 CHIC1Q5VXU3 224 aa25.22■■□□□ 1.63
EFNB1-201ENST00000204961 PCGF6Q9BYE7 350 aa25.22■■□□□ 1.63
EFNB1-201ENST00000204961 EHMT2Q96KQ7 1210 aa25.22■■□□□ 1.63
EFNB1-201ENST00000204961 LOC105371045A0A1W2PR82 267 aa25.09■■□□□ 1.61
EFNB1-201ENST00000204961 MYO15BQ96JP2 1530 aa25.05■■□□□ 1.6
EFNB1-201ENST00000204961 ZCCHC6Q5VYS8 1495 aaKnown RBP24.94■■□□□ 1.58
EFNB1-201ENST00000204961 PPARGC1BQ86YN6 1023 aaKnown RBP24.94■■□□□ 1.58
EFNB1-201ENST00000204961 FAM9AQ8IZU1 332 aaPredicted RBP24.85■■□□□ 1.57
EFNB1-201ENST00000204961 HRCP23327 699 aa24.68■■□□□ 1.54
EFNB1-201ENST00000204961 CCDC180Q9P1Z9 1646 aa24.42■■□□□ 1.5
EFNB1-201ENST00000204961 TRIM41Q8WV44 630 aa24.32■■□□□ 1.48
EFNB1-201ENST00000204961 TTBK1Q5TCY1 1321 aaPredicted RBP24.3■■□□□ 1.48
EFNB1-201ENST00000204961 SCRIBQ14160 1630 aa24.06■■□□□ 1.44
EFNB1-201ENST00000204961 TRIM26Q12899 539 aaPredicted RBP24.04■■□□□ 1.44
EFNB1-201ENST00000204961 ABCC9O60706 1549 aa24.02■■□□□ 1.44
EFNB1-201ENST00000204961 RSF1Q96T23 1441 aaPredicted RBP23.82■■□□□ 1.4
EFNB1-201ENST00000204961 DCAF1Q9Y4B6 1507 aa23.72■■□□□ 1.39
EFNB1-201ENST00000204961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.7■■□□□ 1.38
EFNB1-201ENST00000204961 CECR2Q9BXF3 1484 aa23.67■■□□□ 1.38
EFNB1-201ENST00000204961 RANGAP1P46060 587 aaPredicted RBP23.65■■□□□ 1.38
EFNB1-201ENST00000204961 RB1CC1Q8TDY2 1594 aa23.64■■□□□ 1.37
EFNB1-201ENST00000204961 CCER1Q8TC90 406 aaPredicted RBP23.52■■□□□ 1.36
EFNB1-201ENST00000204961 PABPN1Q86U42 306 aaKnown RBP eCLIP23.51■■□□□ 1.35
EFNB1-201ENST00000204961 UBTFP17480 764 aaKnown RBP23.39■■□□□ 1.34
EFNB1-201ENST00000204961 MROH2BQ7Z745 1585 aa23.37■■□□□ 1.33
EFNB1-201ENST00000204961 ZEB1P37275 1124 aaPredicted RBP23.3■■□□□ 1.32
EFNB1-201ENST00000204961 WIZO95785 1651 aa23.25■■□□□ 1.31
EFNB1-201ENST00000204961 HNRNPUL2Q1KMD3 747 aaKnown RBP23.15■■□□□ 1.3
EFNB1-201ENST00000204961 SCAF1Q9H7N4 1312 aaKnown RBP23.13■■□□□ 1.29
EFNB1-201ENST00000204961 YTHDC1Q96MU7 727 aaKnown RBP23.12■■□□□ 1.29
EFNB1-201ENST00000204961 ABCC8Q09428 1581 aa23.1■■□□□ 1.29
EFNB1-201ENST00000204961 SOGA1O94964 1423 aa22.99■■□□□ 1.27
EFNB1-201ENST00000204961 CCDC88BA6NC98 1476 aa22.99■■□□□ 1.27
EFNB1-201ENST00000204961 DIEXFQ68CQ4 756 aaKnown RBP22.94■■□□□ 1.26
EFNB1-201ENST00000204961 PELP1Q8IZL8 1130 aaKnown RBP22.94■■□□□ 1.26
EFNB1-201ENST00000204961 RUSC2Q8N2Y8 1516 aa22.91■■□□□ 1.26
EFNB1-201ENST00000204961 CSRNP3Q8WYN3 585 aa22.91■■□□□ 1.26
EFNB1-201ENST00000204961 NEUROD1Q13562 356 aa22.9■■□□□ 1.26
EFNB1-201ENST00000204961 NACADO15069 1562 aa22.88■■□□□ 1.25
EFNB1-201ENST00000204961 CEP162Q5TB80 1403 aa22.78■■□□□ 1.24
EFNB1-201ENST00000204961 APLP2Q06481 763 aa22.77■■□□□ 1.24
EFNB1-201ENST00000204961 GTF3C3Q9Y5Q9 886 aa22.77■■□□□ 1.24
EFNB1-201ENST00000204961 ITGAEP38570 1179 aa22.75■■□□□ 1.23
EFNB1-201ENST00000204961 BAZ1AQ9NRL2 1556 aaPredicted RBP22.68■■□□□ 1.22
EFNB1-201ENST00000204961 ACIN1Q9UKV3 1341 aaKnown RBP22.67■■□□□ 1.22
EFNB1-201ENST00000204961 CENPBP07199 599 aaPredicted RBP22.56■■□□□ 1.2
EFNB1-201ENST00000204961 ATP1B4Q9UN42 357 aaPredicted RBP22.53■■□□□ 1.2
EFNB1-201ENST00000204961 MIER1Q8N108 512 aa22.52■■□□□ 1.2
EFNB1-201ENST00000204961 ZNF316A6NFI3 1004 aaPredicted RBP22.51■■□□□ 1.19
EFNB1-201ENST00000204961 SMARCA2P51531 1590 aa22.48■■□□□ 1.19
EFNB1-201ENST00000204961 SMARCA4P51532 1647 aa22.48■■□□□ 1.19
EFNB1-201ENST00000204961 WRNQ14191 1432 aaPredicted RBP eCLIP22.47■■□□□ 1.19
EFNB1-201ENST00000204961 TNIKQ9UKE5 1360 aa22.47■■□□□ 1.19
EFNB1-201ENST00000204961 TOP2AP11388 1531 aaKnown RBP22.47■■□□□ 1.19
EFNB1-201ENST00000204961 CLIP1P30622 1438 aa22.38■■□□□ 1.17
EFNB1-201ENST00000204961 P3H3Q8IVL6 736 aa22.34■■□□□ 1.17
EFNB1-201ENST00000204961 GOLGA3Q08378 1498 aa22.33■■□□□ 1.16
EFNB1-201ENST00000204961 KANK4Q5T7N3 995 aaPredicted RBP22.31■■□□□ 1.16
EFNB1-201ENST00000204961 EIF4G1Q04637 1599 aaKnown RBP22.29■■□□□ 1.16
EFNB1-201ENST00000204961 RAPGEF2Q9Y4G8 1499 aa22.27■■□□□ 1.16
EFNB1-201ENST00000204961 UNC13AQ9UPW8 1703 aa22.23■■□□□ 1.15
EFNB1-201ENST00000204961 SYNJ1O43426 1573 aa22.19■■□□□ 1.14
EFNB1-201ENST00000204961 BAZ1BQ9UIG0 1483 aaKnown RBP22.18■■□□□ 1.14
EFNB1-201ENST00000204961 HIRIP3Q9BW71 556 aaPredicted RBP22.17■■□□□ 1.14
EFNB1-201ENST00000204961 CEP164Q9UPV0 1460 aa22.12■■□□□ 1.13
EFNB1-201ENST00000204961 FAM50AQ14320 339 aaKnown RBP22.1■■□□□ 1.13
EFNB1-201ENST00000204961 EEA1Q15075 1411 aa22.1■■□□□ 1.13
EFNB1-201ENST00000204961 ATAD2BQ9ULI0 1458 aa22.08■■□□□ 1.13
EFNB1-201ENST00000204961 BICRAQ9NZM4 1560 aa22.07■■□□□ 1.12
EFNB1-201ENST00000204961 VPS8Q8N3P4 1428 aa22.04■■□□□ 1.12
EFNB1-201ENST00000204961 BCANQ96GW7 911 aa22.01■■□□□ 1.11
EFNB1-201ENST00000204961 KCNH8Q96L42 1107 aa22.01■■□□□ 1.11
EFNB1-201ENST00000204961 SIN3AQ96ST3 1273 aa21.95■■□□□ 1.1
EFNB1-201ENST00000204961 ARID3CA6NKF2 412 aa21.94■■□□□ 1.1
EFNB1-201ENST00000204961 KIF21BO75037 1637 aa21.88■■□□□ 1.09
EFNB1-201ENST00000204961 DDX10Q13206 875 aaKnown RBP21.87■■□□□ 1.09
EFNB1-201ENST00000204961 MYT1Q01538 1121 aa21.84■■□□□ 1.09
EFNB1-201ENST00000204961 CNGB1Q14028 1251 aaPredicted RBP21.83■■□□□ 1.09
EFNB1-201ENST00000204961 DHX57Q6P158 1386 aaKnown RBP21.82■■□□□ 1.08
EFNB1-201ENST00000204961 ARAP1Q96P48 1450 aa21.79■■□□□ 1.08
EFNB1-201ENST00000204961 KIF27Q86VH2 1401 aa21.72■■□□□ 1.07
EFNB1-201ENST00000204961 TRIM52Q96A61 297 aa21.71■■□□□ 1.07
EFNB1-201ENST00000204961 CUX2O14529 1486 aa21.7■■□□□ 1.07
EFNB1-201ENST00000204961 CCNB3Q8WWL7 1395 aa21.68■■□□□ 1.06
EFNB1-201ENST00000204961 RAB3GAP2Q9H2M9 1393 aa21.64■■□□□ 1.06
EFNB1-201ENST00000204961 CUX1P39880 1505 aa21.64■■□□□ 1.05
EFNB1-201ENST00000204961 CHIC2Q9UKJ5 165 aa21.64■■□□□ 1.05
EFNB1-201ENST00000204961 SUPT16HQ9Y5B9 1047 aaKnown RBP21.63■■□□□ 1.05
EFNB1-201ENST00000204961 SENP3-EIF4A1A0A087X0R7 540 aa21.58■■□□□ 1.05
EFNB1-201ENST00000204961 PRXQ9BXM0 1461 aa21.58■■□□□ 1.04
EFNB1-201ENST00000204961 CARMIL1Q5VZK9 1371 aa21.58■■□□□ 1.04
EFNB1-201ENST00000204961 TOP2BQ02880 1626 aa21.58■■□□□ 1.04
EFNB1-201ENST00000204961 ARHGAP35Q9NRY4 1499 aa21.56■■□□□ 1.04
EFNB1-201ENST00000204961 FKBP8Q14318 412 aa21.55■■□□□ 1.04
EFNB1-201ENST00000204961 IGF1RP08069 1367 aa21.54■■□□□ 1.04
EFNB1-201ENST00000204961 DNAJC5BQ9UF47 199 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms