Protein–RNA interactions for Protein: Q86XP3

DDX42, ATP-dependent RNA helicase DDX42, humanhuman

Known RBP eCLIP

Length 938 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42Q86XP3 PPP6R3-203ENST00000393800 5093 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.613e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-202ENST00000265637 4783 ntTSL 5 BASIC10.96□□□□□ -0.653e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-219ENST00000529907 826 ntTSL 510.35□□□□□ -0.753e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-224ENST00000533127 551 ntTSL 410.35□□□□□ -0.753e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-218ENST00000529710 3228 ntTSL 1 (best) BASIC8.83□□□□□ -13e-6■■□□□ 12.8
DDX42Q86XP3 PPP6R3-206ENST00000524904 4292 ntAPPRIS ALT1 TSL 1 (best) BASIC8.19□□□□□ -1.13e-6■■□□□ 12.8
DDX42Q86XP3 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.051e-6■■□□□ 12.8
DDX42Q86XP3 TRIM25-202ENST00000537230 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.181e-6■■□□□ 12.8
DDX42Q86XP3 TRIM25-205ENST00000572021 1555 ntTSL 1 (best)12.44□□□□□ -0.421e-6■■□□□ 12.8
DDX42Q86XP3 RTN4-210ENST00000427710 589 ntTSL 415.63■□□□□ 0.091e-6■■□□□ 12.7
DDX42Q86XP3 WARS-220ENST00000554950 1376 ntTSL 210.14□□□□□ -0.791e-8■■□□□ 12.7
DDX42Q86XP3 EGFL7-206ENST00000492002 654 ntTSL 524.63■■□□□ 1.536e-8■■□□□ 12.6
DDX42Q86XP3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.066e-8■■□□□ 12.6
DDX42Q86XP3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.996e-8■■□□□ 12.6
DDX42Q86XP3 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.916e-8■■□□□ 12.6
DDX42Q86XP3 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.656e-8■■□□□ 12.6
DDX42Q86XP3 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.77■□□□□ 0.442e-6■■□□□ 12.5
DDX42Q86XP3 CCNL2-210ENST00000473872 557 ntTSL 213.54□□□□□ -0.242e-6■■□□□ 12.5
DDX42Q86XP3 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC7.46□□□□□ -1.217e-7■■□□□ 12.5
DDX42Q86XP3 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC15.57■□□□□ 0.081e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.041e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC14.73□□□□□ -0.051e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC14.43□□□□□ -0.11e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC14.19□□□□□ -0.141e-10■■□□□ 12.4
DDX42Q86XP3 DNMT3B-201ENST00000201963 4255 ntTSL 1 (best) BASIC12.47□□□□□ -0.411e-10■■□□□ 12.4
DDX42Q86XP3 VCL-202ENST00000372755 6489 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.481e-10■■□□□ 12.4
DDX42Q86XP3 VCL-201ENST00000211998 5490 ntAPPRIS P4 TSL 1 (best) BASIC11.06□□□□□ -0.641e-10■■□□□ 12.4
DDX42Q86XP3 VCL-207ENST00000624354 3307 ntTSL 29.47□□□□□ -0.891e-10■■□□□ 12.4
DDX42Q86XP3 VCL-206ENST00000623461 7995 ntTSL 1 (best)9.4□□□□□ -0.91e-10■■□□□ 12.4
DDX42Q86XP3 OAZ1-204ENST00000588673 780 ntTSL 321.47■■□□□ 1.035e-11■■□□□ 12.4
DDX42Q86XP3 SCART1-205ENST00000488261 4709 ntTSL 220.39■□□□□ 0.864e-8■■□□□ 12.4
DDX42Q86XP3 SCART1-204ENST00000482993 4904 ntTSL 220.25■□□□□ 0.834e-8■■□□□ 12.4
DDX42Q86XP3 SCART1-202ENST00000463137 4756 ntTSL 219.85■□□□□ 0.774e-8■■□□□ 12.4
DDX42Q86XP3 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.384e-8■■□□□ 12.4
DDX42Q86XP3 TMC6-209ENST00000588087 2384 ntTSL 223.48■■□□□ 1.353e-6■■□□□ 12.4
DDX42Q86XP3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC22.8■■□□□ 1.243e-6■■□□□ 12.4
DDX42Q86XP3 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.67■□□□□ 0.93e-6■■□□□ 12.4
DDX42Q86XP3 EIF4A1-206ENST00000577929 696 ntTSL 220.01■□□□□ 0.791e-7■■□□□ 12.4
DDX42Q86XP3 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.733e-6■■□□□ 12.4
DDX42Q86XP3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.631e-7■■□□□ 12.4
DDX42Q86XP3 PPIF-203ENST00000472580 761 ntTSL 517.81■□□□□ 0.441e-7■■□□□ 12.4
DDX42Q86XP3 PPIF-205ENST00000498681 518 ntTSL 217.81■□□□□ 0.441e-7■■□□□ 12.4
DDX42Q86XP3 TMC6-224ENST00000593044 3070 ntTSL 217.44■□□□□ 0.383e-6■■□□□ 12.4
DDX42Q86XP3 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.263e-6■■□□□ 12.4
DDX42Q86XP3 PPIF-202ENST00000448165 821 ntTSL 216.44■□□□□ 0.221e-7■■□□□ 12.4
DDX42Q86XP3 ARAP1-210ENST00000465814 5612 ntTSL 215.71■□□□□ 0.19e-9■■□□□ 12.4
DDX42Q86XP3 ARAP1-208ENST00000452383 994 ntTSL 315.67■□□□□ 0.19e-9■■□□□ 12.4
DDX42Q86XP3 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.059e-9■■□□□ 12.4
DDX42Q86XP3 EIF4A1-219ENST00000581770 447 ntTSL 214.78□□□□□ -0.041e-7■■□□□ 12.4
DDX42Q86XP3 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.19e-9■■□□□ 12.4
DDX42Q86XP3 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.149e-9■■□□□ 12.4
DDX42Q86XP3 USP20-207ENST00000491731 821 ntTSL 213.91□□□□□ -0.181e-7■■□□□ 12.4
DDX42Q86XP3 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.29e-9■■□□□ 12.4
DDX42Q86XP3 USP20-205ENST00000474895 825 ntTSL 513.66□□□□□ -0.221e-7■■□□□ 12.4
DDX42Q86XP3 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.261e-7■■□□□ 12.4
DDX42Q86XP3 EIF4A1-205ENST00000577738 531 ntTSL 213.4□□□□□ -0.261e-7■■□□□ 12.4
DDX42Q86XP3 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.261e-7■■□□□ 12.4
DDX42Q86XP3 USP20-203ENST00000372429 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.321e-7■■□□□ 12.4
DDX42Q86XP3 ARAP1-205ENST00000426523 4066 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.539e-9■■□□□ 12.4
DDX42Q86XP3 ARAP1-207ENST00000429686 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.629e-9■■□□□ 12.4
DDX42Q86XP3 EIF4A1-217ENST00000581384 642 ntTSL 510.33□□□□□ -0.761e-7■■□□□ 12.4
DDX42Q86XP3 CALR-205ENST00000587486 957 ntTSL 217.62■□□□□ 0.418e-7■■□□□ 12.3
DDX42Q86XP3 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.238e-7■■□□□ 12.3
DDX42Q86XP3 CALR-207ENST00000590325 781 ntTSL 215□□□□□ -0.018e-7■■□□□ 12.3
DDX42Q86XP3 CALR-206ENST00000588454 776 ntTSL 311.81□□□□□ -0.528e-7■■□□□ 12.3
DDX42Q86XP3 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.552e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.98■■□□□ 1.432e-6■■□□□ 12.3
DDX42Q86XP3 GPCPD1-206ENST00000481690 819 ntTSL 323.53■■□□□ 1.362e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-225ENST00000473680 1232 ntTSL 223.05■■□□□ 1.282e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.222e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-204ENST00000378332 1982 ntTSL 222.13■■□□□ 1.132e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-211ENST00000566973 442 ntTSL 221.68■■□□□ 1.062e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-221ENST00000466074 1564 ntTSL 221.17■□□□□ 0.982e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-208ENST00000422811 771 ntTSL 321.01■□□□□ 0.952e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.852e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-207ENST00000470046 1211 ntTSL 219.59■□□□□ 0.732e-6■■□□□ 12.3
DDX42Q86XP3 ANAPC2-207ENST00000495611 747 ntTSL 219.57■□□□□ 0.722e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-231ENST00000488994 1437 ntTSL 219.03■□□□□ 0.642e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-224ENST00000472324 2143 ntTSL 1 (best)19.01■□□□□ 0.632e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-206ENST00000427222 1811 ntTSL 518.81■□□□□ 0.62e-6■■□□□ 12.3
DDX42Q86XP3 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.582e-6■■□□□ 12.3
DDX42Q86XP3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.582e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.58■□□□□ 0.572e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-230ENST00000488168 976 ntTSL 318.41■□□□□ 0.542e-6■■□□□ 12.3
DDX42Q86XP3 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.42e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-222ENST00000466638 1204 ntTSL 217.36■□□□□ 0.372e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.06■□□□□ 0.322e-6■■□□□ 12.3
DDX42Q86XP3 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.112e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.072e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.072e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.062e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-232ENST00000489536 836 ntTSL 215.39■□□□□ 0.052e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-214ENST00000439087 754 ntTSL 515.35■□□□□ 0.052e-6■■□□□ 12.3
DDX42Q86XP3 PNCK-211ENST00000433470 717 ntTSL 514.94□□□□□ -0.022e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.052e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-205ENST00000401672 2199 ntTSL 214.43□□□□□ -0.12e-6■■□□□ 12.3
DDX42Q86XP3 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.112e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.22e-6■■□□□ 12.3
DDX42Q86XP3 PPP6R2-201ENST00000216061 3415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.342e-6■■□□□ 12.3
DDX42Q86XP3 RNF213-202ENST00000411702 6428 ntTSL 212.4□□□□□ -0.422e-6■■□□□ 12.3
Retrieved 100 of 2,477 protein–RNA pairs in 117.8 ms