RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 DCAF8L2P0C7V8 631 aa17.5■□□□□ 0.39
VCL-201ENST00000211998 PELP1Q8IZL8 1130 aaKnown RBP16.95■□□□□ 0.3
VCL-201ENST00000211998 MYT1Q01538 1121 aa16.83■□□□□ 0.28
VCL-201ENST00000211998 NISCHQ9Y2I1 1504 aa16.71■□□□□ 0.27
VCL-201ENST00000211998 SUPT5HO00267 1087 aaKnown RBP16.61■□□□□ 0.25
VCL-201ENST00000211998 PCGF6Q9BYE7 350 aa16.38■□□□□ 0.21
VCL-201ENST00000211998 CENPBP07199 599 aaPredicted RBP16.38■□□□□ 0.21
VCL-201ENST00000211998 ERICH6Q7L0X2 663 aa16.33■□□□□ 0.2
VCL-201ENST00000211998 SHROOM4Q9ULL8 1493 aa16.23■□□□□ 0.19
VCL-201ENST00000211998 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
VCL-201ENST00000211998 ZEB1P37275 1124 aaPredicted RBP16.11■□□□□ 0.17
VCL-201ENST00000211998 CCER1Q8TC90 406 aaPredicted RBP16.11■□□□□ 0.17
VCL-201ENST00000211998 APLP2Q06481 763 aa16■□□□□ 0.15
VCL-201ENST00000211998 YTHDC1Q96MU7 727 aaKnown RBP15.91■□□□□ 0.14
VCL-201ENST00000211998 FAM9AQ8IZU1 332 aaPredicted RBP15.88■□□□□ 0.13
VCL-201ENST00000211998 HRCP23327 699 aa15.87■□□□□ 0.13
VCL-201ENST00000211998 TTBK1Q5TCY1 1321 aaPredicted RBP15.77■□□□□ 0.12
VCL-201ENST00000211998 NEFLP07196 543 aa15.77■□□□□ 0.11
VCL-201ENST00000211998 PPARGC1BQ86YN6 1023 aaKnown RBP15.57■□□□□ 0.08
VCL-201ENST00000211998 TRIM26Q12899 539 aaPredicted RBP15.49■□□□□ 0.07
VCL-201ENST00000211998 TRIM41Q8WV44 630 aa15.44■□□□□ 0.06
VCL-201ENST00000211998 RANGAP1P46060 587 aaPredicted RBP15.34■□□□□ 0.05
VCL-201ENST00000211998 GTF3C3Q9Y5Q9 886 aa15.34■□□□□ 0.05
VCL-201ENST00000211998 ATP1B4Q9UN42 357 aaPredicted RBP15.32■□□□□ 0.04
VCL-201ENST00000211998 DAXXQ9UER7 740 aaPredicted RBP15.31■□□□□ 0.04
VCL-201ENST00000211998 RTL5Q5HYW3 569 aaPredicted RBP15.3■□□□□ 0.04
VCL-201ENST00000211998 UBTFP17480 764 aaKnown RBP15.28■□□□□ 0.04
VCL-201ENST00000211998 DIEXFQ68CQ4 756 aaKnown RBP15.23■□□□□ 0.03
VCL-201ENST00000211998 ACIN1Q9UKV3 1341 aaKnown RBP15.09■□□□□ 0.01
VCL-201ENST00000211998 BCANQ96GW7 911 aa15.04■□□□□ -0
VCL-201ENST00000211998 LOC105371045A0A1W2PR82 267 aa15.02■□□□□ -0
VCL-201ENST00000211998 ZNF316A6NFI3 1004 aaPredicted RBP14.99□□□□□ -0.01
VCL-201ENST00000211998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.99□□□□□ -0.01
VCL-201ENST00000211998 EIF5BO60841 1220 aaKnown RBP14.92□□□□□ -0.02
VCL-201ENST00000211998 CDK11AQ9UQ88 783 aaPredicted RBP14.9□□□□□ -0.02
VCL-201ENST00000211998 CHIC1Q5VXU3 224 aa14.88□□□□□ -0.03
VCL-201ENST00000211998 HNRNPUL2Q1KMD3 747 aaKnown RBP14.86□□□□□ -0.03
VCL-201ENST00000211998 SCAF1Q9H7N4 1312 aaKnown RBP14.83□□□□□ -0.04
VCL-201ENST00000211998 MYT1LQ9UL68 1186 aa14.82□□□□□ -0.04
VCL-201ENST00000211998 POLR3GLQ9BT43 218 aa14.78□□□□□ -0.04
VCL-201ENST00000211998 CLSPNQ9HAW4 1339 aa14.76□□□□□ -0.05
VCL-201ENST00000211998 CNGB1Q14028 1251 aaPredicted RBP14.76□□□□□ -0.05
VCL-201ENST00000211998 ITGAEP38570 1179 aa14.76□□□□□ -0.05
VCL-201ENST00000211998 GLIPR1L2Q4G1C9 344 aa14.75□□□□□ -0.05
VCL-201ENST00000211998 NEUROD1Q13562 356 aa14.7□□□□□ -0.06
VCL-201ENST00000211998 ANP32AP39687 249 aaKnown RBP14.65□□□□□ -0.06
VCL-201ENST00000211998 FKBP8Q14318 412 aa14.57□□□□□ -0.08
VCL-201ENST00000211998 ANP32CO43423 234 aa14.56□□□□□ -0.08
VCL-201ENST00000211998 ANP32EQ9BTT0 268 aa14.56□□□□□ -0.08
VCL-201ENST00000211998 NBR1Q14596 966 aa14.54□□□□□ -0.08
VCL-201ENST00000211998 NPM2Q86SE8 214 aaKnown RBP14.53□□□□□ -0.08
VCL-201ENST00000211998 BCL11AQ9H165 835 aa14.52□□□□□ -0.08
VCL-201ENST00000211998 SLC4A1APQ9BWU0 796 aaKnown RBP14.45□□□□□ -0.1
VCL-201ENST00000211998 FAM50AQ14320 339 aaKnown RBP14.42□□□□□ -0.1
VCL-201ENST00000211998 ABCC9O60706 1549 aa14.42□□□□□ -0.1
VCL-201ENST00000211998 ZBTB47Q9UFB7 747 aaPredicted RBP14.38□□□□□ -0.11
VCL-201ENST00000211998 TRIM52Q96A61 297 aa14.38□□□□□ -0.11
VCL-201ENST00000211998 PABPN1Q86U42 306 aaKnown RBP eCLIP14.36□□□□□ -0.11
VCL-201ENST00000211998 ANP32BQ92688 251 aaKnown RBP14.33□□□□□ -0.11
VCL-201ENST00000211998 RTN4Q9NQC3 1192 aaKnown RBP14.25□□□□□ -0.13
VCL-201ENST00000211998 MIER1Q8N108 512 aa14.24□□□□□ -0.13
VCL-201ENST00000211998 ARXQ96QS3 562 aa14.24□□□□□ -0.13
VCL-201ENST00000211998 HNRNPUQ00839 825 aaKnown RBP eCLIP14.21□□□□□ -0.13
VCL-201ENST00000211998 CANXP27824 592 aaKnown RBP14.19□□□□□ -0.14
VCL-201ENST00000211998 FBLN2P98095 1184 aa14.19□□□□□ -0.14
VCL-201ENST00000211998 DCAF1Q9Y4B6 1507 aa14.17□□□□□ -0.14
VCL-201ENST00000211998 CCDC136Q96JN2 1154 aa14.17□□□□□ -0.14
VCL-201ENST00000211998 ZNF326Q5BKZ1 582 aaKnown RBP14.16□□□□□ -0.14
VCL-201ENST00000211998 IRX6P78412 446 aaPredicted RBP14.14□□□□□ -0.15
VCL-201ENST00000211998 DDX10Q13206 875 aaKnown RBP14.12□□□□□ -0.15
VCL-201ENST00000211998 HSP90AA1P07900 732 aaKnown RBP14.11□□□□□ -0.15
VCL-201ENST00000211998 NEFMP07197 916 aa14.1□□□□□ -0.15
VCL-201ENST00000211998 UPF2Q9HAU5 1272 aaKnown RBP14.1□□□□□ -0.15
VCL-201ENST00000211998 ERICH6BQ5W0A0 696 aa14.08□□□□□ -0.16
VCL-201ENST00000211998 DEKP35659 375 aaKnown RBP14.08□□□□□ -0.16
VCL-201ENST00000211998 CSRNP3Q8WYN3 585 aa14.08□□□□□ -0.16
VCL-201ENST00000211998 TNNT2P45379 298 aaPredicted RBP14.08□□□□□ -0.16
VCL-201ENST00000211998 FAM9BQ8IZU0 186 aa14.07□□□□□ -0.16
VCL-201ENST00000211998 NAP1L5Q96NT1 182 aaPredicted RBP14.06□□□□□ -0.16
VCL-201ENST00000211998 SUPT16HQ9Y5B9 1047 aaKnown RBP14.03□□□□□ -0.16
VCL-201ENST00000211998 TRIM44Q96DX7 344 aaPredicted RBP14.03□□□□□ -0.16
VCL-201ENST00000211998 DDRGK1Q96HY6 314 aa14□□□□□ -0.17
VCL-201ENST00000211998 NOP58Q9Y2X3 529 aaKnown RBP14□□□□□ -0.17
VCL-201ENST00000211998 P3H3Q8IVL6 736 aa14□□□□□ -0.17
VCL-201ENST00000211998 PPM1GO15355 546 aaPredicted RBP13.98□□□□□ -0.17
VCL-201ENST00000211998 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.96□□□□□ -0.17
VCL-201ENST00000211998 ZNF777Q9ULD5 760 aaPredicted RBP13.96□□□□□ -0.17
VCL-201ENST00000211998 LAS1LQ9Y4W2 734 aaKnown RBP13.96□□□□□ -0.18
VCL-201ENST00000211998 SLC24A1O60721 1099 aa13.95□□□□□ -0.18
VCL-201ENST00000211998 ARID3CA6NKF2 412 aa13.94□□□□□ -0.18
VCL-201ENST00000211998 ESF1Q9H501 851 aaKnown RBP13.93□□□□□ -0.18
VCL-201ENST00000211998 SALL2Q9Y467 1007 aaPredicted RBP13.93□□□□□ -0.18
VCL-201ENST00000211998 SCRIBQ14160 1630 aa13.92□□□□□ -0.18
VCL-201ENST00000211998 RBM19Q9Y4C8 960 aaKnown RBP13.92□□□□□ -0.18
VCL-201ENST00000211998 CDK11BP21127 795 aaKnown RBP13.89□□□□□ -0.19
VCL-201ENST00000211998 BECN1Q14457 450 aa13.88□□□□□ -0.19
VCL-201ENST00000211998 MRS2Q9HD23 443 aa13.87□□□□□ -0.19
VCL-201ENST00000211998 TONSLQ96HA7 1378 aa13.87□□□□□ -0.19
VCL-201ENST00000211998 NPM1P06748 294 aaKnown RBP eCLIP13.86□□□□□ -0.19
VCL-201ENST00000211998 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms