RNA–Protein interactions for RNA: ENST00000427710.5

RTN4-210, Transcript of reticulon 4, humanhuman

TSL 4

Gene RTN4, Length 589 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-210ENST00000427710 NISCHQ9Y2I1 1504 aa36.38■■■■□ 3.41
RTN4-210ENST00000427710 CCDC180Q9P1Z9 1646 aa32.39■■■□□ 2.78
RTN4-210ENST00000427710 ABCC9O60706 1549 aa31.93■■■□□ 2.7
RTN4-210ENST00000427710 DCAF8L2P0C7V8 631 aa30.57■■■□□ 2.48
RTN4-210ENST00000427710 RB1CC1Q8TDY2 1594 aa30.56■■■□□ 2.48
RTN4-210ENST00000427710 NACADO15069 1562 aa30.46■■■□□ 2.47
RTN4-210ENST00000427710 ZCCHC6Q5VYS8 1495 aaKnown RBP30.26■■■□□ 2.44
RTN4-210ENST00000427710 MYO15BQ96JP2 1530 aa30.14■■■□□ 2.42
RTN4-210ENST00000427710 UNC13AQ9UPW8 1703 aa30.05■■■□□ 2.4
RTN4-210ENST00000427710 DCAF1Q9Y4B6 1507 aa30■■■□□ 2.39
RTN4-210ENST00000427710 PABPN1Q86U42 306 aaKnown RBP eCLIP29.85■■■□□ 2.37
RTN4-210ENST00000427710 BICRAQ9NZM4 1560 aa29.71■■■□□ 2.35
RTN4-210ENST00000427710 SCRIBQ14160 1630 aa29.67■■■□□ 2.34
RTN4-210ENST00000427710 DNAJC5BQ9UF47 199 aa29.47■■■□□ 2.31
RTN4-210ENST00000427710 SHROOM4Q9ULL8 1493 aa29.17■■■□□ 2.26
RTN4-210ENST00000427710 EIF4G1Q04637 1599 aaKnown RBP28.9■■■□□ 2.22
RTN4-210ENST00000427710 CC2D2AQ9P2K1 1620 aa28.86■■■□□ 2.21
RTN4-210ENST00000427710 CECR2Q9BXF3 1484 aa28.66■■■□□ 2.18
RTN4-210ENST00000427710 SMARCA4P51532 1647 aa28.3■■■□□ 2.12
RTN4-210ENST00000427710 BAZ1AQ9NRL2 1556 aaPredicted RBP28.17■■■□□ 2.1
RTN4-210ENST00000427710 ATAD2BQ9ULI0 1458 aa28.15■■■□□ 2.1
RTN4-210ENST00000427710 MROH2BQ7Z745 1585 aa28.1■■■□□ 2.09
RTN4-210ENST00000427710 NCAPD3P42695 1498 aa28.09■■■□□ 2.09
RTN4-210ENST00000427710 SMARCA2P51531 1590 aa28.07■■■□□ 2.08
RTN4-210ENST00000427710 HMGXB3Q12766 1538 aa27.95■■■□□ 2.06
RTN4-210ENST00000427710 PEG3Q9GZU2 1588 aa27.94■■■□□ 2.06
RTN4-210ENST00000427710 BAZ1BQ9UIG0 1483 aaKnown RBP27.9■■■□□ 2.06
RTN4-210ENST00000427710 WIZO95785 1651 aa27.84■■■□□ 2.05
RTN4-210ENST00000427710 RSF1Q96T23 1441 aaPredicted RBP27.67■■■□□ 2.02
RTN4-210ENST00000427710 NESP48681 1621 aa27.62■■■□□ 2.01
RTN4-210ENST00000427710 ERCC6Q03468 1493 aa27.49■■□□□ 1.99
RTN4-210ENST00000427710 TOP2AP11388 1531 aaKnown RBP27.43■■□□□ 1.98
RTN4-210ENST00000427710 LAMC3Q9Y6N6 1575 aa27.4■■□□□ 1.98
RTN4-210ENST00000427710 KIF21AQ7Z4S6 1674 aa27.31■■□□□ 1.96
RTN4-210ENST00000427710 CADPSQ9ULU8 1353 aa27.3■■□□□ 1.96
RTN4-210ENST00000427710 PDS5BQ9NTI5 1447 aa27.2■■□□□ 1.94
RTN4-210ENST00000427710 THOC2Q8NI27 1593 aaKnown RBP27.18■■□□□ 1.94
RTN4-210ENST00000427710 CUX2O14529 1486 aa27.17■■□□□ 1.94
RTN4-210ENST00000427710 CCDC88BA6NC98 1476 aa27.14■■□□□ 1.94
RTN4-210ENST00000427710 CFTRP13569 1480 aa27.1■■□□□ 1.93
RTN4-210ENST00000427710 FANCD2Q9BXW9 1451 aa27.02■■□□□ 1.92
RTN4-210ENST00000427710 PRDM2Q13029 1718 aa27■■□□□ 1.91
RTN4-210ENST00000427710 CEP164Q9UPV0 1460 aa26.99■■□□□ 1.91
RTN4-210ENST00000427710 SUPT5HO00267 1087 aaKnown RBP26.98■■□□□ 1.91
RTN4-210ENST00000427710 MRC2Q9UBG0 1479 aa26.98■■□□□ 1.91
RTN4-210ENST00000427710 WDR62O43379 1518 aa26.89■■□□□ 1.89
RTN4-210ENST00000427710 URB2Q14146 1524 aaKnown RBP26.79■■□□□ 1.88
RTN4-210ENST00000427710 TOPBP1Q92547 1522 aa26.59■■□□□ 1.85
RTN4-210ENST00000427710 DNAJC5Q9H3Z4 198 aa26.55■■□□□ 1.84
RTN4-210ENST00000427710 DNMBPQ6XZF7 1577 aa26.53■■□□□ 1.84
RTN4-210ENST00000427710 ABCC8Q09428 1581 aa26.47■■□□□ 1.83
RTN4-210ENST00000427710 IFT140Q96RY7 1462 aa26.4■■□□□ 1.82
RTN4-210ENST00000427710 ZNF608Q9ULD9 1512 aaPredicted RBP26.39■■□□□ 1.81
RTN4-210ENST00000427710 CUX1P39880 1505 aa26.36■■□□□ 1.81
RTN4-210ENST00000427710 POLA1P09884 1462 aaPredicted RBP26.34■■□□□ 1.81
RTN4-210ENST00000427710 TARBP1Q13395 1621 aaKnown RBP26.32■■□□□ 1.8
RTN4-210ENST00000427710 RAD54L2Q9Y4B4 1467 aa26.3■■□□□ 1.8
RTN4-210ENST00000427710 FGD5Q6ZNL6 1462 aa26.28■■□□□ 1.8
RTN4-210ENST00000427710 EIF4G3O43432 1585 aaKnown RBP26.26■■□□□ 1.79
RTN4-210ENST00000427710 SOGA1O94964 1423 aa26.22■■□□□ 1.79
RTN4-210ENST00000427710 AQRO60306 1485 aaKnown RBP eCLIP26.22■■□□□ 1.79
RTN4-210ENST00000427710 TDRD9Q8NDG6 1382 aaKnown RBP26.14■■□□□ 1.78
RTN4-210ENST00000427710 SYNJ1O43426 1573 aa26.1■■□□□ 1.77
RTN4-210ENST00000427710 WDR97A6NE52 1622 aa26.1■■□□□ 1.77
RTN4-210ENST00000427710 WRNQ14191 1432 aaPredicted RBP eCLIP26.08■■□□□ 1.77
RTN4-210ENST00000427710 BIVM-ERCC5R4GMW8 1640 aa26.08■■□□□ 1.77
RTN4-210ENST00000427710 TOP2BQ02880 1626 aa26.06■■□□□ 1.76
RTN4-210ENST00000427710 OSCARQ8IYS5 282 aa26.05■■□□□ 1.76
RTN4-210ENST00000427710 CHD1O14646 1710 aa26.03■■□□□ 1.76
RTN4-210ENST00000427710 PBRM1Q86U86 1689 aa25.96■■□□□ 1.75
RTN4-210ENST00000427710 ABCA10Q8WWZ4 1543 aa25.96■■□□□ 1.75
RTN4-210ENST00000427710 SNAPC4Q5SXM2 1469 aa25.96■■□□□ 1.75
RTN4-210ENST00000427710 FBLN2P98095 1184 aa25.95■■□□□ 1.74
RTN4-210ENST00000427710 GAPVD1Q14C86 1478 aa25.92■■□□□ 1.74
RTN4-210ENST00000427710 ABCA5Q8WWZ7 1642 aa25.92■■□□□ 1.74
RTN4-210ENST00000427710 GRIN2BQ13224 1484 aa25.91■■□□□ 1.74
RTN4-210ENST00000427710 MAGI1Q96QZ7 1491 aaPredicted RBP25.84■■□□□ 1.73
RTN4-210ENST00000427710 CHMP7Q8WUX9 453 aaPredicted RBP25.79■■□□□ 1.72
RTN4-210ENST00000427710 SYNJ2O15056 1496 aa25.76■■□□□ 1.71
RTN4-210ENST00000427710 RIMBP3CA6NJZ7 1639 aa25.75■■□□□ 1.71
RTN4-210ENST00000427710 RIMBP3BA6NNM3 1639 aa25.75■■□□□ 1.71
RTN4-210ENST00000427710 RIMBP3Q9UFD9 1639 aa25.75■■□□□ 1.71
RTN4-210ENST00000427710 TRIM41Q8WV44 630 aa25.74■■□□□ 1.71
RTN4-210ENST00000427710 ADAMTS12P58397 1594 aa25.69■■□□□ 1.7
RTN4-210ENST00000427710 ARHGEF11O15085 1522 aa25.67■■□□□ 1.7
RTN4-210ENST00000427710 CLASP1Q7Z460 1538 aa25.64■■□□□ 1.7
RTN4-210ENST00000427710 ERICH3Q5RHP9 1530 aa25.63■■□□□ 1.69
RTN4-210ENST00000427710 GRIN2AQ12879 1464 aa25.6■■□□□ 1.69
RTN4-210ENST00000427710 FHAD1B1AJZ9 1412 aa25.58■■□□□ 1.69
RTN4-210ENST00000427710 CEP170Q5SW79 1584 aa25.53■■□□□ 1.68
RTN4-210ENST00000427710 KIF27Q86VH2 1401 aa25.53■■□□□ 1.68
RTN4-210ENST00000427710 CYB5RLQ6IPT4 315 aa25.48■■□□□ 1.67
RTN4-210ENST00000427710 ARAP1Q96P48 1450 aa25.47■■□□□ 1.67
RTN4-210ENST00000427710 IGF1RP08069 1367 aa25.47■■□□□ 1.67
RTN4-210ENST00000427710 NUP160Q12769 1436 aa25.46■■□□□ 1.67
RTN4-210ENST00000427710 CUL7Q14999 1698 aa25.41■■□□□ 1.66
RTN4-210ENST00000427710 RUSC2Q8N2Y8 1516 aa25.4■■□□□ 1.66
RTN4-210ENST00000427710 ERCC6L2Q5T890 1561 aa25.38■■□□□ 1.65
RTN4-210ENST00000427710 SHROOM2Q13796 1616 aa25.33■■□□□ 1.65
RTN4-210ENST00000427710 CARMIL1Q5VZK9 1371 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 172 ms