RNA–Protein interactions for RNA: ENST00000481690.2

GPCPD1-206, Transcript of glycerophosphocholine phosphodiesterase 1, humanhuman

TSL 3

Gene GPCPD1, Length 819 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPCPD1-206ENST00000481690 NISCHQ9Y2I1 1504 aa55.08■■■■■ 6.41
GPCPD1-206ENST00000481690 CCDC180Q9P1Z9 1646 aa49.34■■■■■ 5.49
GPCPD1-206ENST00000481690 ABCC9O60706 1549 aa48.96■■■■■ 5.43
GPCPD1-206ENST00000481690 RB1CC1Q8TDY2 1594 aa46.77■■■■■ 5.08
GPCPD1-206ENST00000481690 NACADO15069 1562 aa46.5■■■■■ 5.03
GPCPD1-206ENST00000481690 DCAF8L2P0C7V8 631 aa46.38■■■■■ 5.02
GPCPD1-206ENST00000481690 MYO15BQ96JP2 1530 aa45.92■■■■■ 4.94
GPCPD1-206ENST00000481690 UNC13AQ9UPW8 1703 aa45.8■■■■■ 4.92
GPCPD1-206ENST00000481690 ZCCHC6Q5VYS8 1495 aaKnown RBP45.74■■■■■ 4.91
GPCPD1-206ENST00000481690 PABPN1Q86U42 306 aaKnown RBP eCLIP45.6■■■■■ 4.89
GPCPD1-206ENST00000481690 DCAF1Q9Y4B6 1507 aa45.49■■■■■ 4.87
GPCPD1-206ENST00000481690 DNAJC5BQ9UF47 199 aa45.47■■■■■ 4.87
GPCPD1-206ENST00000481690 BICRAQ9NZM4 1560 aa45.36■■■■■ 4.85
GPCPD1-206ENST00000481690 SCRIBQ14160 1630 aa45.03■■■■■ 4.8
GPCPD1-206ENST00000481690 SHROOM4Q9ULL8 1493 aa44.75■■■■■ 4.75
GPCPD1-206ENST00000481690 CC2D2AQ9P2K1 1620 aa44.25■■■■■ 4.67
GPCPD1-206ENST00000481690 EIF4G1Q04637 1599 aaKnown RBP44.24■■■■■ 4.67
GPCPD1-206ENST00000481690 CECR2Q9BXF3 1484 aa44.03■■■■■ 4.64
GPCPD1-206ENST00000481690 SMARCA4P51532 1647 aa42.95■■■■■ 4.47
GPCPD1-206ENST00000481690 NCAPD3P42695 1498 aa42.87■■■■■ 4.45
GPCPD1-206ENST00000481690 ATAD2BQ9ULI0 1458 aa42.83■■■■■ 4.45
GPCPD1-206ENST00000481690 SMARCA2P51531 1590 aa42.77■■■■■ 4.44
GPCPD1-206ENST00000481690 BAZ1AQ9NRL2 1556 aaPredicted RBP42.77■■■■■ 4.44
GPCPD1-206ENST00000481690 HMGXB3Q12766 1538 aa42.65■■■■■ 4.42
GPCPD1-206ENST00000481690 BAZ1BQ9UIG0 1483 aaKnown RBP42.49■■■■■ 4.39
GPCPD1-206ENST00000481690 MROH2BQ7Z745 1585 aa42.47■■■■■ 4.39
GPCPD1-206ENST00000481690 PEG3Q9GZU2 1588 aa42.46■■■■■ 4.39
GPCPD1-206ENST00000481690 ERCC6Q03468 1493 aa42.27■■■■■ 4.36
GPCPD1-206ENST00000481690 NESP48681 1621 aa42.16■■■■■ 4.34
GPCPD1-206ENST00000481690 WIZO95785 1651 aa42.04■■■■■ 4.32
GPCPD1-206ENST00000481690 CUX2O14529 1486 aa42■■■■■ 4.31
GPCPD1-206ENST00000481690 LAMC3Q9Y6N6 1575 aa41.93■■■■■ 4.3
GPCPD1-206ENST00000481690 KIF21AQ7Z4S6 1674 aa41.71■■■■■ 4.27
GPCPD1-206ENST00000481690 RSF1Q96T23 1441 aaPredicted RBP41.69■■■■■ 4.26
GPCPD1-206ENST00000481690 THOC2Q8NI27 1593 aaKnown RBP41.68■■■■■ 4.26
GPCPD1-206ENST00000481690 PDS5BQ9NTI5 1447 aa41.63■■■■■ 4.26
GPCPD1-206ENST00000481690 CADPSQ9ULU8 1353 aa41.6■■■■■ 4.25
GPCPD1-206ENST00000481690 TOP2AP11388 1531 aaKnown RBP41.5■■■■■ 4.23
GPCPD1-206ENST00000481690 DNAJC5Q9H3Z4 198 aa41.47■■■■■ 4.23
GPCPD1-206ENST00000481690 MRC2Q9UBG0 1479 aa41.28■■■■■ 4.2
GPCPD1-206ENST00000481690 CFTRP13569 1480 aa41.21■■■■■ 4.19
GPCPD1-206ENST00000481690 CEP164Q9UPV0 1460 aa41.21■■■■■ 4.19
GPCPD1-206ENST00000481690 FANCD2Q9BXW9 1451 aa41.18■■■■■ 4.18
GPCPD1-206ENST00000481690 WDR62O43379 1518 aa41.17■■■■■ 4.18
GPCPD1-206ENST00000481690 PRDM2Q13029 1718 aa41.01■■■■■ 4.16
GPCPD1-206ENST00000481690 CCDC88BA6NC98 1476 aa40.98■■■■■ 4.15
GPCPD1-206ENST00000481690 URB2Q14146 1524 aaKnown RBP40.81■■■■■ 4.12
GPCPD1-206ENST00000481690 TOPBP1Q92547 1522 aa40.45■■■■■ 4.07
GPCPD1-206ENST00000481690 DNMBPQ6XZF7 1577 aa40.35■■■■■ 4.05
GPCPD1-206ENST00000481690 ABCC8Q09428 1581 aa40.35■■■■■ 4.05
GPCPD1-206ENST00000481690 IFT140Q96RY7 1462 aa40.34■■■■■ 4.05
GPCPD1-206ENST00000481690 ZNF608Q9ULD9 1512 aaPredicted RBP40.25■■■■■ 4.03
GPCPD1-206ENST00000481690 SUPT5HO00267 1087 aaKnown RBP40.19■■■■■ 4.02
GPCPD1-206ENST00000481690 EIF4G3O43432 1585 aaKnown RBP40.11■■■■■ 4.01
GPCPD1-206ENST00000481690 OSCARQ8IYS5 282 aa40.11■■■■■ 4.01
GPCPD1-206ENST00000481690 TARBP1Q13395 1621 aaKnown RBP40.06■■■■■ 4
GPCPD1-206ENST00000481690 POLA1P09884 1462 aaPredicted RBP40.05■■■■■ 4
GPCPD1-206ENST00000481690 TRIM41Q8WV44 630 aa39.93■■■■□ 3.98
GPCPD1-206ENST00000481690 AQRO60306 1485 aaKnown RBP eCLIP39.92■■■■□ 3.983e-8■■■■■ 39.9
GPCPD1-206ENST00000481690 RAD54L2Q9Y4B4 1467 aa39.9■■■■□ 3.98
GPCPD1-206ENST00000481690 CUX1P39880 1505 aa39.89■■■■□ 3.98
GPCPD1-206ENST00000481690 FGD5Q6ZNL6 1462 aa39.88■■■■□ 3.97
GPCPD1-206ENST00000481690 SOGA1O94964 1423 aa39.85■■■■□ 3.97
GPCPD1-206ENST00000481690 CHD1O14646 1710 aa39.79■■■■□ 3.96
GPCPD1-206ENST00000481690 TDRD9Q8NDG6 1382 aaKnown RBP39.73■■■■□ 3.95
GPCPD1-206ENST00000481690 WDR97A6NE52 1622 aa39.68■■■■□ 3.94
GPCPD1-206ENST00000481690 RIMBP3CA6NJZ7 1639 aa39.65■■■■□ 3.94
GPCPD1-206ENST00000481690 RIMBP3BA6NNM3 1639 aa39.65■■■■□ 3.94
GPCPD1-206ENST00000481690 RIMBP3Q9UFD9 1639 aa39.65■■■■□ 3.94
GPCPD1-206ENST00000481690 FBLN2P98095 1184 aa39.62■■■■□ 3.93
GPCPD1-206ENST00000481690 SNAPC4Q5SXM2 1469 aa39.56■■■■□ 3.92
GPCPD1-206ENST00000481690 ARHGEF11O15085 1522 aa39.53■■■■□ 3.92
GPCPD1-206ENST00000481690 GRIN2BQ13224 1484 aa39.48■■■■□ 3.91
GPCPD1-206ENST00000481690 PBRM1Q86U86 1689 aa39.48■■■■□ 3.91
GPCPD1-206ENST00000481690 MAGI1Q96QZ7 1491 aaPredicted RBP39.44■■■■□ 3.9
GPCPD1-206ENST00000481690 ABCA10Q8WWZ4 1543 aa39.41■■■■□ 3.9
GPCPD1-206ENST00000481690 GAPVD1Q14C86 1478 aa39.4■■■■□ 3.9
GPCPD1-206ENST00000481690 BIVM-ERCC5R4GMW8 1640 aa39.4■■■■□ 3.9
GPCPD1-206ENST00000481690 ABCA5Q8WWZ7 1642 aa39.37■■■■□ 3.89
GPCPD1-206ENST00000481690 TOP2BQ02880 1626 aa39.36■■■■□ 3.89
GPCPD1-206ENST00000481690 WRNQ14191 1432 aaPredicted RBP eCLIP39.36■■■■□ 3.89
GPCPD1-206ENST00000481690 SYNJ1O43426 1573 aa39.35■■■■□ 3.89
GPCPD1-206ENST00000481690 CHMP7Q8WUX9 453 aaPredicted RBP39.35■■■■□ 3.89
GPCPD1-206ENST00000481690 SYNJ2O15056 1496 aa39.3■■■■□ 3.88
GPCPD1-206ENST00000481690 CLASP1Q7Z460 1538 aa39.24■■■■□ 3.87
GPCPD1-206ENST00000481690 CYB5RLQ6IPT4 315 aa39.18■■■■□ 3.86
GPCPD1-206ENST00000481690 ARAP1Q96P48 1450 aa39.16■■■■□ 3.86
GPCPD1-206ENST00000481690 ADAMTS12P58397 1594 aa39.06■■■■□ 3.84
GPCPD1-206ENST00000481690 GRIN2AQ12879 1464 aa38.98■■■■□ 3.83
GPCPD1-206ENST00000481690 ERICH3Q5RHP9 1530 aa38.94■■■■□ 3.82
GPCPD1-206ENST00000481690 FHAD1B1AJZ9 1412 aa38.89■■■■□ 3.82
GPCPD1-206ENST00000481690 CEP170Q5SW79 1584 aa38.86■■■■□ 3.81
GPCPD1-206ENST00000481690 NUP160Q12769 1436 aa38.8■■■■□ 3.8
GPCPD1-206ENST00000481690 ERCC6L2Q5T890 1561 aa38.68■■■■□ 3.78
GPCPD1-206ENST00000481690 TRHP20396 242 aaPredicted RBP38.67■■■■□ 3.78
GPCPD1-206ENST00000481690 SHROOM2Q13796 1616 aa38.63■■■■□ 3.78
GPCPD1-206ENST00000481690 KIF27Q86VH2 1401 aa38.58■■■■□ 3.77
GPCPD1-206ENST00000481690 CUL7Q14999 1698 aa38.51■■■■□ 3.76
GPCPD1-206ENST00000481690 RUSC2Q8N2Y8 1516 aa38.5■■■■□ 3.75
GPCPD1-206ENST00000481690 IGF1RP08069 1367 aa38.45■■■■□ 3.75
Retrieved 100 of 20,778 RNA–protein pairs in 225.2 ms