RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 PELP1Q8IZL8 1130 aaKnown RBP14.45□□□□□ -0.1
VCL-206ENST00000623461 MYT1Q01538 1121 aa14.38□□□□□ -0.11
VCL-206ENST00000623461 NISCHQ9Y2I1 1504 aa14.25□□□□□ -0.13
VCL-206ENST00000623461 DCAF8L2P0C7V8 631 aa14.23□□□□□ -0.13
VCL-206ENST00000623461 SUPT5HO00267 1087 aaKnown RBP14.19□□□□□ -0.14
VCL-206ENST00000623461 CENPBP07199 599 aaPredicted RBP13.96□□□□□ -0.17
VCL-206ENST00000623461 ZEB1P37275 1124 aaPredicted RBP13.96□□□□□ -0.17
VCL-206ENST00000623461 PCGF6Q9BYE7 350 aa13.88□□□□□ -0.19
VCL-206ENST00000623461 SHROOM4Q9ULL8 1493 aa13.77□□□□□ -0.21
VCL-206ENST00000623461 ERICH6Q7L0X2 663 aa13.73□□□□□ -0.21
VCL-206ENST00000623461 CCER1Q8TC90 406 aaPredicted RBP13.72□□□□□ -0.21
VCL-206ENST00000623461 HRCP23327 699 aa13.61□□□□□ -0.23
VCL-206ENST00000623461 APLP2Q06481 763 aa13.54□□□□□ -0.24
VCL-206ENST00000623461 EHMT2Q96KQ7 1210 aa13.51□□□□□ -0.25
VCL-206ENST00000623461 FAM9AQ8IZU1 332 aaPredicted RBP13.45□□□□□ -0.26
VCL-206ENST00000623461 NEFLP07196 543 aa13.41□□□□□ -0.26
VCL-206ENST00000623461 TRIM26Q12899 539 aaPredicted RBP13.39□□□□□ -0.27
VCL-206ENST00000623461 YTHDC1Q96MU7 727 aaKnown RBP13.3□□□□□ -0.28
VCL-206ENST00000623461 TRIM41Q8WV44 630 aa13.21□□□□□ -0.29
VCL-206ENST00000623461 TTBK1Q5TCY1 1321 aaPredicted RBP13.2□□□□□ -0.3
VCL-206ENST00000623461 PPARGC1BQ86YN6 1023 aaKnown RBP13.09□□□□□ -0.31
VCL-206ENST00000623461 DIEXFQ68CQ4 756 aaKnown RBP13□□□□□ -0.33
VCL-206ENST00000623461 GTF3C3Q9Y5Q9 886 aa12.95□□□□□ -0.34
VCL-206ENST00000623461 DAXXQ9UER7 740 aaPredicted RBP12.95□□□□□ -0.34
VCL-206ENST00000623461 UBTFP17480 764 aaKnown RBP12.94□□□□□ -0.34
VCL-206ENST00000623461 CHIC1Q5VXU3 224 aa12.94□□□□□ -0.34
VCL-206ENST00000623461 RTL5Q5HYW3 569 aaPredicted RBP12.92□□□□□ -0.34
VCL-206ENST00000623461 ACIN1Q9UKV3 1341 aaKnown RBP12.87□□□□□ -0.35
VCL-206ENST00000623461 LOC105371045A0A1W2PR82 267 aa12.83□□□□□ -0.36
VCL-206ENST00000623461 RANGAP1P46060 587 aaPredicted RBP12.79□□□□□ -0.36
VCL-206ENST00000623461 CLSPNQ9HAW4 1339 aa12.77□□□□□ -0.37
VCL-206ENST00000623461 CCDC180Q9P1Z9 1646 aa12.76□□□□□ -0.37
VCL-206ENST00000623461 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.74□□□□□ -0.37
VCL-206ENST00000623461 ATP1B4Q9UN42 357 aaPredicted RBP12.69□□□□□ -0.38
VCL-206ENST00000623461 CDK11AQ9UQ88 783 aaPredicted RBP12.69□□□□□ -0.38
VCL-206ENST00000623461 ZNF316A6NFI3 1004 aaPredicted RBP12.68□□□□□ -0.38
VCL-206ENST00000623461 MYT1LQ9UL68 1186 aa12.67□□□□□ -0.38
VCL-206ENST00000623461 HNRNPUL2Q1KMD3 747 aaKnown RBP12.65□□□□□ -0.38
VCL-206ENST00000623461 BCANQ96GW7 911 aa12.57□□□□□ -0.4
VCL-206ENST00000623461 SCAF1Q9H7N4 1312 aaKnown RBP12.55□□□□□ -0.4
VCL-206ENST00000623461 DCAF1Q9Y4B6 1507 aa12.54□□□□□ -0.4
VCL-206ENST00000623461 ITGAEP38570 1179 aa12.51□□□□□ -0.41
VCL-206ENST00000623461 ANP32CO43423 234 aa12.5□□□□□ -0.41
VCL-206ENST00000623461 ANP32AP39687 249 aaKnown RBP12.48□□□□□ -0.41
VCL-206ENST00000623461 GLIPR1L2Q4G1C9 344 aa12.47□□□□□ -0.41
VCL-206ENST00000623461 NEUROD1Q13562 356 aa12.46□□□□□ -0.41
VCL-206ENST00000623461 POLR3GLQ9BT43 218 aa12.45□□□□□ -0.42
VCL-206ENST00000623461 EIF5BO60841 1220 aaKnown RBP12.37□□□□□ -0.43
VCL-206ENST00000623461 ANP32EQ9BTT0 268 aa12.35□□□□□ -0.43
VCL-206ENST00000623461 FKBP8Q14318 412 aa12.35□□□□□ -0.43
VCL-206ENST00000623461 CNGB1Q14028 1251 aaPredicted RBP12.28□□□□□ -0.44
VCL-206ENST00000623461 FAM50AQ14320 339 aaKnown RBP12.24□□□□□ -0.45
VCL-206ENST00000623461 ZBTB47Q9UFB7 747 aaPredicted RBP12.22□□□□□ -0.45
VCL-206ENST00000623461 ANP32BQ92688 251 aaKnown RBP12.19□□□□□ -0.46
VCL-206ENST00000623461 NPM2Q86SE8 214 aaKnown RBP12.19□□□□□ -0.46
VCL-206ENST00000623461 NBR1Q14596 966 aa12.16□□□□□ -0.46
VCL-206ENST00000623461 TRIM52Q96A61 297 aa12.15□□□□□ -0.46
VCL-206ENST00000623461 BCL11AQ9H165 835 aa12.15□□□□□ -0.46
VCL-206ENST00000623461 MIER1Q8N108 512 aa12.14□□□□□ -0.47
VCL-206ENST00000623461 HNRNPUQ00839 825 aaKnown RBP eCLIP12.11□□□□□ -0.47
VCL-206ENST00000623461 CANXP27824 592 aaKnown RBP12.07□□□□□ -0.48
VCL-206ENST00000623461 CCDC136Q96JN2 1154 aa12.07□□□□□ -0.48
VCL-206ENST00000623461 UPF2Q9HAU5 1272 aaKnown RBP12.06□□□□□ -0.48
VCL-206ENST00000623461 DDRGK1Q96HY6 314 aa12.05□□□□□ -0.48
VCL-206ENST00000623461 DDX10Q13206 875 aaKnown RBP12.04□□□□□ -0.48
VCL-206ENST00000623461 CSRNP3Q8WYN3 585 aa12.04□□□□□ -0.48
VCL-206ENST00000623461 SLC4A1APQ9BWU0 796 aaKnown RBP12.03□□□□□ -0.48
VCL-206ENST00000623461 TONSLQ96HA7 1378 aa12□□□□□ -0.49
VCL-206ENST00000623461 PPM1GO15355 546 aaPredicted RBP11.99□□□□□ -0.49
VCL-206ENST00000623461 ERICH6BQ5W0A0 696 aa11.98□□□□□ -0.49
VCL-206ENST00000623461 SUPT16HQ9Y5B9 1047 aaKnown RBP11.98□□□□□ -0.49
VCL-206ENST00000623461 MYO15BQ96JP2 1530 aa11.97□□□□□ -0.49
VCL-206ENST00000623461 FAM9BQ8IZU0 186 aa11.95□□□□□ -0.5
VCL-206ENST00000623461 HSP90AA1P07900 732 aaKnown RBP11.95□□□□□ -0.5
VCL-206ENST00000623461 ZNF326Q5BKZ1 582 aaKnown RBP11.95□□□□□ -0.5
VCL-206ENST00000623461 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.94□□□□□ -0.5
VCL-206ENST00000623461 NOP58Q9Y2X3 529 aaKnown RBP11.93□□□□□ -0.5
VCL-206ENST00000623461 ZCCHC6Q5VYS8 1495 aaKnown RBP11.92□□□□□ -0.5
VCL-206ENST00000623461 TNNT2P45379 298 aaPredicted RBP11.91□□□□□ -0.5
VCL-206ENST00000623461 NEFMP07197 916 aa11.91□□□□□ -0.5
VCL-206ENST00000623461 BECN1Q14457 450 aa11.9□□□□□ -0.5
VCL-206ENST00000623461 TRIM44Q96DX7 344 aaPredicted RBP11.89□□□□□ -0.51
VCL-206ENST00000623461 DEKP35659 375 aaKnown RBP11.89□□□□□ -0.51
VCL-206ENST00000623461 PPP4R2Q9NY27 417 aa11.88□□□□□ -0.51
VCL-206ENST00000623461 MRS2Q9HD23 443 aa11.87□□□□□ -0.51
VCL-206ENST00000623461 IRX6P78412 446 aaPredicted RBP11.87□□□□□ -0.51
VCL-206ENST00000623461 TMC1Q8TDI8 760 aa11.86□□□□□ -0.51
VCL-206ENST00000623461 NACADO15069 1562 aa11.84□□□□□ -0.51
VCL-206ENST00000623461 RBM19Q9Y4C8 960 aaKnown RBP11.84□□□□□ -0.51
VCL-206ENST00000623461 NAP1L5Q96NT1 182 aaPredicted RBP11.81□□□□□ -0.52
VCL-206ENST00000623461 ARXQ96QS3 562 aa11.8□□□□□ -0.52
VCL-206ENST00000623461 RTN4Q9NQC3 1192 aaKnown RBP11.8□□□□□ -0.52
VCL-206ENST00000623461 GOLGA6L22H0YM25 854 aa11.77□□□□□ -0.53
VCL-206ENST00000623461 RB1CC1Q8TDY2 1594 aa11.77□□□□□ -0.53
VCL-206ENST00000623461 TSHZ2Q9NRE2 1034 aa11.76□□□□□ -0.53
VCL-206ENST00000623461 EIF4G2P78344 907 aaKnown RBP eCLIP11.75□□□□□ -0.532e-6■■■□□ 16.3
VCL-206ENST00000623461 L1TD1Q5T7N2 865 aaKnown RBP11.74□□□□□ -0.53
VCL-206ENST00000623461 EEA1Q15075 1411 aa11.74□□□□□ -0.53
VCL-206ENST00000623461 LAS1LQ9Y4W2 734 aaKnown RBP11.73□□□□□ -0.53
VCL-206ENST00000623461 WDR43Q15061 677 aaKnown RBP eCLIP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms