Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SOX1O00570 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC26.71■■□□□ 1.87
SOX1O00570 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
SOX1O00570 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.87
SOX1O00570 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
SOX1O00570 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC26.7■■□□□ 1.86
SOX1O00570 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC26.7■■□□□ 1.86
SOX1O00570 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SOX1O00570 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC26.69■■□□□ 1.86
SOX1O00570 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
SOX1O00570 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SOX1O00570 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC26.68■■□□□ 1.86
SOX1O00570 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.68■■□□□ 1.86
SOX1O00570 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.68■■□□□ 1.86
SOX1O00570 AL117332.1-201ENST00000622628 974 ntBASIC26.68■■□□□ 1.86
SOX1O00570 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SOX1O00570 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
SOX1O00570 MIR4466-201ENST00000606121 54 ntBASIC26.67■■□□□ 1.86
SOX1O00570 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SOX1O00570 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.66■■□□□ 1.86
SOX1O00570 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
SOX1O00570 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC26.66■■□□□ 1.86
SOX1O00570 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SOX1O00570 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SOX1O00570 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SOX1O00570 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
SOX1O00570 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SOX1O00570 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC26.64■■□□□ 1.86
SOX1O00570 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC26.64■■□□□ 1.86
SOX1O00570 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.64■■□□□ 1.86
SOX1O00570 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.64■■□□□ 1.86
SOX1O00570 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.63■■□□□ 1.85
SOX1O00570 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SOX1O00570 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.63■■□□□ 1.85
SOX1O00570 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SOX1O00570 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
SOX1O00570 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
SOX1O00570 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SOX1O00570 AC021242.3-201ENST00000607598 1377 ntBASIC26.61■■□□□ 1.85
SOX1O00570 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SOX1O00570 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC26.61■■□□□ 1.85
SOX1O00570 MIR3621-201ENST00000580529 85 ntBASIC26.61■■□□□ 1.85
SOX1O00570 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC26.61■■□□□ 1.85
SOX1O00570 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC26.61■■□□□ 1.85
SOX1O00570 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC26.6■■□□□ 1.85
SOX1O00570 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
SOX1O00570 AC142381.2-201ENST00000566120 298 ntBASIC26.6■■□□□ 1.85
SOX1O00570 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.6■■□□□ 1.85
SOX1O00570 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
SOX1O00570 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SOX1O00570 AC137630.3-201ENST00000607245 391 ntBASIC26.59■■□□□ 1.85
SOX1O00570 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
SOX1O00570 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SOX1O00570 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SOX1O00570 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC26.58■■□□□ 1.85
SOX1O00570 RPS2P7-201ENST00000447334 885 ntBASIC26.58■■□□□ 1.85
SOX1O00570 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.58■■□□□ 1.85
SOX1O00570 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.58■■□□□ 1.85
SOX1O00570 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SOX1O00570 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SOX1O00570 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.57■■□□□ 1.84
SOX1O00570 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
SOX1O00570 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.56■■□□□ 1.84
SOX1O00570 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
SOX1O00570 AC092028.1-203ENST00000608262 953 ntBASIC26.56■■□□□ 1.84
SOX1O00570 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SOX1O00570 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SOX1O00570 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.55■■□□□ 1.84
SOX1O00570 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.55■■□□□ 1.84
SOX1O00570 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.55■■□□□ 1.84
SOX1O00570 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SOX1O00570 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SOX1O00570 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
SOX1O00570 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SOX1O00570 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SOX1O00570 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SOX1O00570 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.54■■□□□ 1.84
SOX1O00570 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SOX1O00570 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.53■■□□□ 1.84
SOX1O00570 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SOX1O00570 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SOX1O00570 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.52■■□□□ 1.84
SOX1O00570 AC106739.1-201ENST00000617035 715 ntBASIC26.52■■□□□ 1.84
SOX1O00570 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
SOX1O00570 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.51■■□□□ 1.83
SOX1O00570 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SOX1O00570 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.51■■□□□ 1.83
SOX1O00570 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
SOX1O00570 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SOX1O00570 PBX2P1-201ENST00000493219 1291 ntBASIC26.5■■□□□ 1.83
SOX1O00570 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
SOX1O00570 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
SOX1O00570 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC26.49■■□□□ 1.83
SOX1O00570 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SOX1O00570 KRT18P24-201ENST00000344739 1156 ntBASIC26.49■■□□□ 1.83
SOX1O00570 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
SOX1O00570 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.49■■□□□ 1.83
SOX1O00570 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.49■■□□□ 1.83
SOX1O00570 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
SOX1O00570 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 13 ms