Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC38.18■■■■□ 3.7
SOX1O00570 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC37.86■■■■□ 3.65
SOX1O00570 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC37.51■■■■□ 3.59
SOX1O00570 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC36.92■■■■□ 3.5
SOX1O00570 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC36.79■■■■□ 3.48
SOX1O00570 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC36.76■■■■□ 3.48
SOX1O00570 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC36.7■■■■□ 3.47
SOX1O00570 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC36.47■■■■□ 3.43
SOX1O00570 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC36.41■■■■□ 3.42
SOX1O00570 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
SOX1O00570 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC36.14■■■■□ 3.38
SOX1O00570 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC35.99■■■■□ 3.35
SOX1O00570 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC35.92■■■■□ 3.34
SOX1O00570 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC35.77■■■■□ 3.32
SOX1O00570 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC35.75■■■■□ 3.31
SOX1O00570 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC35.72■■■■□ 3.31
SOX1O00570 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC35.63■■■■□ 3.29
SOX1O00570 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC35.37■■■■□ 3.25
SOX1O00570 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC35.35■■■■□ 3.25
SOX1O00570 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC35.34■■■■□ 3.25
SOX1O00570 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
SOX1O00570 ZNRF2P1-201ENST00000441407 443 ntBASIC35.28■■■■□ 3.24
SOX1O00570 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC35.27■■■■□ 3.24
SOX1O00570 AL356512.1-201ENST00000607453 1739 ntBASIC35.26■■■■□ 3.24
SOX1O00570 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC35.14■■■■□ 3.22
SOX1O00570 AC006077.2-201ENST00000623591 457 ntBASIC35.12■■■■□ 3.21
SOX1O00570 INO80B-203ENST00000409917 796 ntTSL 2 BASIC35.11■■■■□ 3.21
SOX1O00570 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
SOX1O00570 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC34.94■■■■□ 3.18
SOX1O00570 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC34.82■■■■□ 3.16
SOX1O00570 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
SOX1O00570 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC34.56■■■■□ 3.12
SOX1O00570 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC34.54■■■■□ 3.12
SOX1O00570 AP002365.1-201ENST00000603448 772 ntBASIC34.38■■■■□ 3.09
SOX1O00570 AC015813.7-201ENST00000623294 581 ntBASIC34.36■■■■□ 3.09
SOX1O00570 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC34.35■■■■□ 3.09
SOX1O00570 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC34.34■■■■□ 3.09
SOX1O00570 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC34.19■■■■□ 3.06
SOX1O00570 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC34.19■■■■□ 3.06
SOX1O00570 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC34.09■■■■□ 3.05
SOX1O00570 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC34.09■■■■□ 3.05
SOX1O00570 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC33.97■■■■□ 3.03
SOX1O00570 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC33.95■■■■□ 3.03
SOX1O00570 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC33.95■■■■□ 3.03
SOX1O00570 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC33.89■■■■□ 3.02
SOX1O00570 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC33.89■■■■□ 3.02
SOX1O00570 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC33.88■■■■□ 3.01
SOX1O00570 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC33.86■■■■□ 3.01
SOX1O00570 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC33.85■■■■□ 3.01
SOX1O00570 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC33.84■■■■□ 3.01
SOX1O00570 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC33.78■■■■□ 3
SOX1O00570 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC33.64■■■□□ 2.98
SOX1O00570 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC33.62■■■□□ 2.97
SOX1O00570 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC33.56■■■□□ 2.96
SOX1O00570 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC33.52■■■□□ 2.96
SOX1O00570 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC33.46■■■□□ 2.95
SOX1O00570 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SOX1O00570 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.94
SOX1O00570 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
SOX1O00570 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC33.44■■■□□ 2.94
SOX1O00570 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
SOX1O00570 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC33.32■■■□□ 2.92
SOX1O00570 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC33.31■■■□□ 2.92
SOX1O00570 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC33.3■■■□□ 2.92
SOX1O00570 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC33.28■■■□□ 2.92
SOX1O00570 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC33.28■■■□□ 2.92
SOX1O00570 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC33.26■■■□□ 2.92
SOX1O00570 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC33.26■■■□□ 2.91
SOX1O00570 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC33.23■■■□□ 2.91
SOX1O00570 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC33.22■■■□□ 2.91
SOX1O00570 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC33.21■■■□□ 2.91
SOX1O00570 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC33.17■■■□□ 2.9
SOX1O00570 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
SOX1O00570 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC33.16■■■□□ 2.9
SOX1O00570 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC33.15■■■□□ 2.9
SOX1O00570 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC33.15■■■□□ 2.9
SOX1O00570 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC33.1■■■□□ 2.89
SOX1O00570 DYNLL1-208ENST00000550178 581 ntBASIC33.1■■■□□ 2.89
SOX1O00570 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC33.07■■■□□ 2.88
SOX1O00570 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
SOX1O00570 HES6-203ENST00000409160 1600 ntTSL 2 BASIC32.99■■■□□ 2.87
SOX1O00570 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC32.98■■■□□ 2.87
SOX1O00570 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC32.98■■■□□ 2.87
SOX1O00570 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC32.97■■■□□ 2.87
SOX1O00570 RPS2P35-201ENST00000443417 897 ntBASIC32.96■■■□□ 2.87
SOX1O00570 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SOX1O00570 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
SOX1O00570 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SOX1O00570 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC32.87■■■□□ 2.85
SOX1O00570 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.87■■■□□ 2.85
SOX1O00570 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
SOX1O00570 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC32.84■■■□□ 2.85
SOX1O00570 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC32.84■■■□□ 2.85
SOX1O00570 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC32.83■■■□□ 2.85
SOX1O00570 AL031258.1-201ENST00000623562 325 ntBASIC32.82■■■□□ 2.84
SOX1O00570 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.81■■■□□ 2.84
SOX1O00570 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
SOX1O00570 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
SOX1O00570 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC32.75■■■□□ 2.83
SOX1O00570 RARRES2P7-201ENST00000567349 469 ntBASIC32.74■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms