RNA–Protein interactions for RNA: ENST00000411463.2

R3HCC1-202, Transcript of R3H domain and coiled-coil containing 1, humanhuman

APPRIS P5 TSL 5 BASIC

Gene R3HCC1, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1-202ENST00000411463 NISCHQ9Y2I1 1504 aa57.06■■■■■ 6.73
R3HCC1-202ENST00000411463 CCDC180Q9P1Z9 1646 aa50.64■■■■■ 5.7
R3HCC1-202ENST00000411463 ABCC9O60706 1549 aa49.64■■■■■ 5.54
R3HCC1-202ENST00000411463 DCAF8L2P0C7V8 631 aa47.78■■■■■ 5.24
R3HCC1-202ENST00000411463 RB1CC1Q8TDY2 1594 aa47.72■■■■■ 5.23
R3HCC1-202ENST00000411463 NACADO15069 1562 aa47.67■■■■■ 5.22
R3HCC1-202ENST00000411463 ZCCHC6Q5VYS8 1495 aaKnown RBP47.52■■■■■ 5.2
R3HCC1-202ENST00000411463 MYO15BQ96JP2 1530 aa47.39■■■■■ 5.18
R3HCC1-202ENST00000411463 DCAF1Q9Y4B6 1507 aa47.2■■■■■ 5.15
R3HCC1-202ENST00000411463 UNC13AQ9UPW8 1703 aa46.51■■■■■ 5.04
R3HCC1-202ENST00000411463 PABPN1Q86U42 306 aaKnown RBP eCLIP46.44■■■■■ 5.02
R3HCC1-202ENST00000411463 BICRAQ9NZM4 1560 aa46.26■■■■■ 5
R3HCC1-202ENST00000411463 SCRIBQ14160 1630 aa46.26■■■■■ 5
R3HCC1-202ENST00000411463 SHROOM4Q9ULL8 1493 aa45.79■■■■■ 4.92
R3HCC1-202ENST00000411463 DNAJC5BQ9UF47 199 aa45.59■■■■■ 4.89
R3HCC1-202ENST00000411463 EIF4G1Q04637 1599 aaKnown RBP45.05■■■■■ 4.8
R3HCC1-202ENST00000411463 CC2D2AQ9P2K1 1620 aa44.86■■■■■ 4.77
R3HCC1-202ENST00000411463 CECR2Q9BXF3 1484 aa44.6■■■■■ 4.73
R3HCC1-202ENST00000411463 SMARCA4P51532 1647 aa44.23■■■■■ 4.67
R3HCC1-202ENST00000411463 BAZ1AQ9NRL2 1556 aaPredicted RBP44.22■■■■■ 4.67
R3HCC1-202ENST00000411463 ATAD2BQ9ULI0 1458 aa44.04■■■■■ 4.64
R3HCC1-202ENST00000411463 NCAPD3P42695 1498 aa44.03■■■■■ 4.64
R3HCC1-202ENST00000411463 MROH2BQ7Z745 1585 aa43.98■■■■■ 4.63
R3HCC1-202ENST00000411463 SMARCA2P51531 1590 aa43.97■■■■■ 4.63
R3HCC1-202ENST00000411463 PEG3Q9GZU2 1588 aa43.8■■■■■ 4.6
R3HCC1-202ENST00000411463 HMGXB3Q12766 1538 aa43.76■■■■■ 4.6
R3HCC1-202ENST00000411463 BAZ1BQ9UIG0 1483 aaKnown RBP43.68■■■■■ 4.58
R3HCC1-202ENST00000411463 RSF1Q96T23 1441 aaPredicted RBP43.51■■■■■ 4.56
R3HCC1-202ENST00000411463 WIZO95785 1651 aa43.47■■■■■ 4.55
R3HCC1-202ENST00000411463 TOP2AP11388 1531 aaKnown RBP43.02■■■■■ 4.48
R3HCC1-202ENST00000411463 NESP48681 1621 aa42.95■■■■■ 4.47
R3HCC1-202ENST00000411463 LAMC3Q9Y6N6 1575 aa42.82■■■■■ 4.45
R3HCC1-202ENST00000411463 ERCC6Q03468 1493 aa42.79■■■■■ 4.44
R3HCC1-202ENST00000411463 CADPSQ9ULU8 1353 aa42.76■■■■■ 4.44
R3HCC1-202ENST00000411463 PDS5BQ9NTI5 1447 aa42.59■■■■■ 4.41
R3HCC1-202ENST00000411463 CCDC88BA6NC98 1476 aa42.56■■■■■ 4.4
R3HCC1-202ENST00000411463 CFTRP13569 1480 aa42.49■■■■■ 4.39
R3HCC1-202ENST00000411463 SUPT5HO00267 1087 aaKnown RBP42.49■■■■■ 4.39
R3HCC1-202ENST00000411463 KIF21AQ7Z4S6 1674 aa42.35■■■■■ 4.37
R3HCC1-202ENST00000411463 CUX2O14529 1486 aa42.31■■■■■ 4.36
R3HCC1-202ENST00000411463 FANCD2Q9BXW9 1451 aa42.25■■■■■ 4.35
R3HCC1-202ENST00000411463 THOC2Q8NI27 1593 aaKnown RBP42.23■■■■■ 4.35
R3HCC1-202ENST00000411463 CEP164Q9UPV0 1460 aa42.19■■■■■ 4.34
R3HCC1-202ENST00000411463 MRC2Q9UBG0 1479 aa42.12■■■■■ 4.33
R3HCC1-202ENST00000411463 PRDM2Q13029 1718 aa42.01■■■■■ 4.32
R3HCC1-202ENST00000411463 WDR62O43379 1518 aa41.95■■■■■ 4.31
R3HCC1-202ENST00000411463 URB2Q14146 1524 aaKnown RBP41.81■■■■■ 4.28
R3HCC1-202ENST00000411463 ABCC8Q09428 1581 aa41.57■■■■■ 4.25
R3HCC1-202ENST00000411463 TOPBP1Q92547 1522 aa41.56■■■■■ 4.24
R3HCC1-202ENST00000411463 DNMBPQ6XZF7 1577 aa41.5■■■■■ 4.23
R3HCC1-202ENST00000411463 IFT140Q96RY7 1462 aa41.31■■■■■ 4.2
R3HCC1-202ENST00000411463 CUX1P39880 1505 aa41.24■■■■■ 4.19
R3HCC1-202ENST00000411463 POLA1P09884 1462 aaPredicted RBP41.22■■■■■ 4.19
R3HCC1-202ENST00000411463 ZNF608Q9ULD9 1512 aaPredicted RBP41.12■■■■■ 4.17
R3HCC1-202ENST00000411463 FGD5Q6ZNL6 1462 aa41.12■■■■■ 4.17
R3HCC1-202ENST00000411463 SOGA1O94964 1423 aa41.08■■■■■ 4.17
R3HCC1-202ENST00000411463 TARBP1Q13395 1621 aaKnown RBP41.07■■■■■ 4.17
R3HCC1-202ENST00000411463 DNAJC5Q9H3Z4 198 aa41.06■■■■■ 4.16
R3HCC1-202ENST00000411463 RAD54L2Q9Y4B4 1467 aa41.05■■■■■ 4.16
R3HCC1-202ENST00000411463 WRNQ14191 1432 aaPredicted RBP eCLIP41.03■■■■■ 4.16
R3HCC1-202ENST00000411463 AQRO60306 1485 aaKnown RBP eCLIP40.92■■■■■ 4.144e-7■■■■□ 19.6
R3HCC1-202ENST00000411463 EIF4G3O43432 1585 aaKnown RBP40.91■■■■■ 4.14
R3HCC1-202ENST00000411463 TOP2BQ02880 1626 aa40.88■■■■■ 4.14
R3HCC1-202ENST00000411463 SYNJ1O43426 1573 aa40.87■■■■■ 4.13
R3HCC1-202ENST00000411463 TDRD9Q8NDG6 1382 aaKnown RBP40.86■■■■■ 4.13
R3HCC1-202ENST00000411463 BIVM-ERCC5R4GMW8 1640 aa40.84■■■■■ 4.13
R3HCC1-202ENST00000411463 WDR97A6NE52 1622 aa40.73■■■■■ 4.11
R3HCC1-202ENST00000411463 ABCA10Q8WWZ4 1543 aa40.72■■■■■ 4.11
R3HCC1-202ENST00000411463 OSCARQ8IYS5 282 aa40.64■■■■■ 4.1
R3HCC1-202ENST00000411463 GAPVD1Q14C86 1478 aa40.59■■■■■ 4.09
R3HCC1-202ENST00000411463 GRIN2BQ13224 1484 aa40.58■■■■■ 4.09
R3HCC1-202ENST00000411463 ABCA5Q8WWZ7 1642 aa40.51■■■■■ 4.08
R3HCC1-202ENST00000411463 SNAPC4Q5SXM2 1469 aa40.51■■■■■ 4.07
R3HCC1-202ENST00000411463 FBLN2P98095 1184 aa40.48■■■■■ 4.07
R3HCC1-202ENST00000411463 MAGI1Q96QZ7 1491 aaPredicted RBP40.46■■■■■ 4.07
R3HCC1-202ENST00000411463 PBRM1Q86U86 1689 aa40.39■■■■■ 4.06
R3HCC1-202ENST00000411463 CHMP7Q8WUX9 453 aaPredicted RBP40.36■■■■■ 4.05
R3HCC1-202ENST00000411463 CHD1O14646 1710 aa40.34■■■■■ 4.05
R3HCC1-202ENST00000411463 SYNJ2O15056 1496 aa40.31■■■■■ 4.04
R3HCC1-202ENST00000411463 ERICH3Q5RHP9 1530 aa40.23■■■■■ 4.03
R3HCC1-202ENST00000411463 KIF27Q86VH2 1401 aa40.18■■■■■ 4.02
R3HCC1-202ENST00000411463 ADAMTS12P58397 1594 aa40.13■■■■■ 4.01
R3HCC1-202ENST00000411463 TRIM41Q8WV44 630 aa40.13■■■■■ 4.01
R3HCC1-202ENST00000411463 FHAD1B1AJZ9 1412 aa40.12■■■■■ 4.01
R3HCC1-202ENST00000411463 GRIN2AQ12879 1464 aa40.05■■■■■ 4
R3HCC1-202ENST00000411463 IGF1RP08069 1367 aa40.03■■■■■ 4
R3HCC1-202ENST00000411463 CLASP1Q7Z460 1538 aa39.97■■■■□ 3.99
R3HCC1-202ENST00000411463 ARHGEF11O15085 1522 aa39.91■■■■□ 3.98
R3HCC1-202ENST00000411463 RIMBP3CA6NJZ7 1639 aa39.87■■■■□ 3.97
R3HCC1-202ENST00000411463 RIMBP3BA6NNM3 1639 aa39.87■■■■□ 3.97
R3HCC1-202ENST00000411463 RIMBP3Q9UFD9 1639 aa39.87■■■■□ 3.97
R3HCC1-202ENST00000411463 NUP160Q12769 1436 aa39.87■■■■□ 3.97
R3HCC1-202ENST00000411463 CUL7Q14999 1698 aa39.82■■■■□ 3.97
R3HCC1-202ENST00000411463 CEP170Q5SW79 1584 aa39.82■■■■□ 3.96
R3HCC1-202ENST00000411463 RUSC2Q8N2Y8 1516 aa39.81■■■■□ 3.96
R3HCC1-202ENST00000411463 CARMIL1Q5VZK9 1371 aa39.78■■■■□ 3.96
R3HCC1-202ENST00000411463 CHIC1Q5VXU3 224 aa39.63■■■■□ 3.94
R3HCC1-202ENST00000411463 CYB5RLQ6IPT4 315 aa39.62■■■■□ 3.93
R3HCC1-202ENST00000411463 ARAP1Q96P48 1450 aa39.59■■■■□ 3.93
R3HCC1-202ENST00000411463 RAPGEF2Q9Y4G8 1499 aa39.53■■■■□ 3.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms