RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 NISCHQ9Y2I1 1504 aa58.28■■■■■ 6.92
HOXC9-201ENST00000303450 CCDC180Q9P1Z9 1646 aa51.53■■■■■ 5.84
HOXC9-201ENST00000303450 ABCC9O60706 1549 aa49.92■■■■■ 5.58
HOXC9-201ENST00000303450 ZCCHC6Q5VYS8 1495 aaKnown RBP48.65■■■■■ 5.38
HOXC9-201ENST00000303450 DCAF8L2P0C7V8 631 aa48.58■■■■■ 5.37
HOXC9-201ENST00000303450 NACADO15069 1562 aa48.33■■■■■ 5.33
HOXC9-201ENST00000303450 RB1CC1Q8TDY2 1594 aa48.26■■■■■ 5.32
HOXC9-201ENST00000303450 DCAF1Q9Y4B6 1507 aa48.22■■■■■ 5.31
HOXC9-201ENST00000303450 MYO15BQ96JP2 1530 aa48.2■■■■■ 5.31
HOXC9-201ENST00000303450 UNC13AQ9UPW8 1703 aa47.16■■■■■ 5.14
HOXC9-201ENST00000303450 SCRIBQ14160 1630 aa47.12■■■■■ 5.13
HOXC9-201ENST00000303450 PABPN1Q86U42 306 aaKnown RBP eCLIP46.78■■■■■ 5.08
HOXC9-201ENST00000303450 BICRAQ9NZM4 1560 aa46.74■■■■■ 5.07
HOXC9-201ENST00000303450 SHROOM4Q9ULL8 1493 aa46.46■■■■■ 5.03
HOXC9-201ENST00000303450 EIF4G1Q04637 1599 aaKnown RBP45.49■■■■■ 4.87
HOXC9-201ENST00000303450 CECR2Q9BXF3 1484 aa45.34■■■■■ 4.85
HOXC9-201ENST00000303450 DNAJC5BQ9UF47 199 aa45.28■■■■■ 4.84
HOXC9-201ENST00000303450 CC2D2AQ9P2K1 1620 aa45.16■■■■■ 4.82
HOXC9-201ENST00000303450 BAZ1AQ9NRL2 1556 aaPredicted RBP45.14■■■■■ 4.82
HOXC9-201ENST00000303450 SMARCA4P51532 1647 aa45.1■■■■■ 4.81
HOXC9-201ENST00000303450 MROH2BQ7Z745 1585 aa44.93■■■■■ 4.78
HOXC9-201ENST00000303450 ATAD2BQ9ULI0 1458 aa44.71■■■■■ 4.75
HOXC9-201ENST00000303450 SMARCA2P51531 1590 aa44.69■■■■■ 4.74
HOXC9-201ENST00000303450 RSF1Q96T23 1441 aaPredicted RBP44.63■■■■■ 4.73
HOXC9-201ENST00000303450 PEG3Q9GZU2 1588 aa44.62■■■■■ 4.73
HOXC9-201ENST00000303450 NCAPD3P42695 1498 aa44.58■■■■■ 4.73
HOXC9-201ENST00000303450 WIZO95785 1651 aa44.48■■■■■ 4.71
HOXC9-201ENST00000303450 HMGXB3Q12766 1538 aa44.41■■■■■ 4.7
HOXC9-201ENST00000303450 BAZ1BQ9UIG0 1483 aaKnown RBP44.4■■■■■ 4.7
HOXC9-201ENST00000303450 SUPT5HO00267 1087 aaKnown RBP44.04■■■■■ 4.64
HOXC9-201ENST00000303450 TOP2AP11388 1531 aaKnown RBP44.03■■■■■ 4.64
HOXC9-201ENST00000303450 CCDC88BA6NC98 1476 aa43.53■■■■■ 4.56
HOXC9-201ENST00000303450 NESP48681 1621 aa43.36■■■■■ 4.53
HOXC9-201ENST00000303450 CADPSQ9ULU8 1353 aa43.34■■■■■ 4.53
HOXC9-201ENST00000303450 LAMC3Q9Y6N6 1575 aa43.32■■■■■ 4.53
HOXC9-201ENST00000303450 CFTRP13569 1480 aa43.19■■■■■ 4.5
HOXC9-201ENST00000303450 PDS5BQ9NTI5 1447 aa43.05■■■■■ 4.48
HOXC9-201ENST00000303450 ERCC6Q03468 1493 aa43.02■■■■■ 4.48
HOXC9-201ENST00000303450 PRDM2Q13029 1718 aa42.91■■■■■ 4.46
HOXC9-201ENST00000303450 KIF21AQ7Z4S6 1674 aa42.86■■■■■ 4.45
HOXC9-201ENST00000303450 FANCD2Q9BXW9 1451 aa42.85■■■■■ 4.45
HOXC9-201ENST00000303450 CEP164Q9UPV0 1460 aa42.74■■■■■ 4.43
HOXC9-201ENST00000303450 MRC2Q9UBG0 1479 aa42.55■■■■■ 4.4
HOXC9-201ENST00000303450 THOC2Q8NI27 1593 aaKnown RBP42.54■■■■■ 4.4
HOXC9-201ENST00000303450 WDR62O43379 1518 aa42.37■■■■■ 4.37
HOXC9-201ENST00000303450 URB2Q14146 1524 aaKnown RBP42.37■■■■■ 4.37
HOXC9-201ENST00000303450 CUX2O14529 1486 aa42.29■■■■■ 4.36
HOXC9-201ENST00000303450 ABCC8Q09428 1581 aa42.25■■■■■ 4.35
HOXC9-201ENST00000303450 TOPBP1Q92547 1522 aa42.22■■■■■ 4.35
HOXC9-201ENST00000303450 DNMBPQ6XZF7 1577 aa42.22■■■■■ 4.35
HOXC9-201ENST00000303450 CUX1P39880 1505 aa42.11■■■■■ 4.33
HOXC9-201ENST00000303450 WRNQ14191 1432 aaPredicted RBP eCLIP42.09■■■■■ 4.33
HOXC9-201ENST00000303450 SYNJ1O43426 1573 aa41.93■■■■■ 4.3
HOXC9-201ENST00000303450 TOP2BQ02880 1626 aa41.91■■■■■ 4.3
HOXC9-201ENST00000303450 POLA1P09884 1462 aaPredicted RBP41.9■■■■■ 4.3
HOXC9-201ENST00000303450 FGD5Q6ZNL6 1462 aa41.9■■■■■ 4.3
HOXC9-201ENST00000303450 BIVM-ERCC5R4GMW8 1640 aa41.89■■■■■ 4.3
HOXC9-201ENST00000303450 IFT140Q96RY7 1462 aa41.82■■■■■ 4.28
HOXC9-201ENST00000303450 SOGA1O94964 1423 aa41.76■■■■■ 4.28
HOXC9-201ENST00000303450 RAD54L2Q9Y4B4 1467 aa41.73■■■■■ 4.27
HOXC9-201ENST00000303450 TARBP1Q13395 1621 aaKnown RBP41.69■■■■■ 4.26
HOXC9-201ENST00000303450 ZNF608Q9ULD9 1512 aaPredicted RBP41.58■■■■■ 4.25
HOXC9-201ENST00000303450 TRIM41Q8WV44 630 aa41.55■■■■■ 4.24
HOXC9-201ENST00000303450 ABCA10Q8WWZ4 1543 aa41.5■■■■■ 4.23
HOXC9-201ENST00000303450 WDR97A6NE52 1622 aa41.48■■■■■ 4.23
HOXC9-201ENST00000303450 TDRD9Q8NDG6 1382 aaKnown RBP41.47■■■■■ 4.23
HOXC9-201ENST00000303450 AQRO60306 1485 aaKnown RBP eCLIP41.44■■■■■ 4.22
HOXC9-201ENST00000303450 EIF4G3O43432 1585 aaKnown RBP41.43■■■■■ 4.22
HOXC9-201ENST00000303450 CHIC1Q5VXU3 224 aa41.39■■■■■ 4.22
HOXC9-201ENST00000303450 GAPVD1Q14C86 1478 aa41.29■■■■■ 4.2
HOXC9-201ENST00000303450 ABCA5Q8WWZ7 1642 aa41.27■■■■■ 4.2
HOXC9-201ENST00000303450 GRIN2BQ13224 1484 aa41.19■■■■■ 4.19
HOXC9-201ENST00000303450 KIF27Q86VH2 1401 aa41.17■■■■■ 4.18
HOXC9-201ENST00000303450 PBRM1Q86U86 1689 aa41.14■■■■■ 4.18
HOXC9-201ENST00000303450 SNAPC4Q5SXM2 1469 aa41.06■■■■■ 4.16
HOXC9-201ENST00000303450 MAGI1Q96QZ7 1491 aaPredicted RBP41.02■■■■■ 4.16
HOXC9-201ENST00000303450 ERICH3Q5RHP9 1530 aa41.02■■■■■ 4.16
HOXC9-201ENST00000303450 RUSC2Q8N2Y8 1516 aa40.95■■■■■ 4.15
HOXC9-201ENST00000303450 IGF1RP08069 1367 aa40.91■■■■■ 4.14
HOXC9-201ENST00000303450 FBLN2P98095 1184 aa40.9■■■■■ 4.14
HOXC9-201ENST00000303450 CHMP7Q8WUX9 453 aaPredicted RBP40.86■■■■■ 4.13
HOXC9-201ENST00000303450 SYNJ2O15056 1496 aa40.85■■■■■ 4.13
HOXC9-201ENST00000303450 ADAMTS12P58397 1594 aa40.85■■■■■ 4.13
HOXC9-201ENST00000303450 FHAD1B1AJZ9 1412 aa40.82■■■■■ 4.13
HOXC9-201ENST00000303450 CHD1O14646 1710 aa40.81■■■■■ 4.12
HOXC9-201ENST00000303450 CUL7Q14999 1698 aa40.77■■■■■ 4.12
HOXC9-201ENST00000303450 EEA1Q15075 1411 aa40.76■■■■■ 4.12
HOXC9-201ENST00000303450 OSCARQ8IYS5 282 aa40.71■■■■■ 4.11
HOXC9-201ENST00000303450 CARMIL1Q5VZK9 1371 aa40.7■■■■■ 4.11
HOXC9-201ENST00000303450 FAM9AQ8IZU1 332 aaPredicted RBP40.7■■■■■ 4.11
HOXC9-201ENST00000303450 GRIN2AQ12879 1464 aa40.66■■■■■ 4.1
HOXC9-201ENST00000303450 CSRNP3Q8WYN3 585 aa40.65■■■■■ 4.1
HOXC9-201ENST00000303450 RAPGEF2Q9Y4G8 1499 aa40.51■■■■■ 4.08
HOXC9-201ENST00000303450 PRXQ9BXM0 1461 aa40.49■■■■■ 4.07
HOXC9-201ENST00000303450 NUP160Q12769 1436 aa40.43■■■■■ 4.06
HOXC9-201ENST00000303450 CEP170Q5SW79 1584 aa40.42■■■■■ 4.06
HOXC9-201ENST00000303450 CLASP1Q7Z460 1538 aa40.35■■■■■ 4.05
HOXC9-201ENST00000303450 DNAJC5Q9H3Z4 198 aa40.34■■■■■ 4.05
HOXC9-201ENST00000303450 KIF21BO75037 1637 aa40.27■■■■■ 4.04
HOXC9-201ENST00000303450 KIAA0586Q9BVV6 1533 aa40.21■■■■■ 4.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms