Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 SH3BGRL2-201ENST00000369838 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.411e-6■■■■■ 120.6
SF3B1O75533 NUP54-202ENST00000502850 1604 ntTSL 1 (best)12.44□□□□□ -0.422e-6■■■■■ 120.6
SF3B1O75533 NXF1-208ENST00000531131 1023 ntTSL 2 BASIC12.4□□□□□ -0.422e-7■■■■■ 120.6
SF3B1O75533 NXF1-203ENST00000526163 569 ntTSL 412.4□□□□□ -0.422e-7■■■■■ 120.6
SF3B1O75533 PNPLA6-203ENST00000450331 4457 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.435e-10■■■■■ 120.6
SF3B1O75533 PCID2-206ENST00000375479 1671 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.435e-10■■■■■ 120.6
SF3B1O75533 SEMA3F-206ENST00000434342 3541 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.445e-10■■■■■ 120.6
SF3B1O75533 RPLP2-203ENST00000525722 489 ntTSL 212.29□□□□□ -0.442e-6■■■■■ 120.6
SF3B1O75533 RPLP2-204ENST00000526222 350 ntTSL 212.29□□□□□ -0.442e-6■■■■■ 120.6
SF3B1O75533 LINC00174-208ENST00000450353 1303 ntTSL 512.28□□□□□ -0.445e-10■■■■■ 120.6
SF3B1O75533 AMBRA1-204ENST00000526545 837 ntTSL 312.24□□□□□ -0.452e-7■■■■■ 120.6
SF3B1O75533 PCID2-204ENST00000375459 1668 ntTSL 2 BASIC12.23□□□□□ -0.455e-10■■■■■ 120.6
SF3B1O75533 DHPS-221ENST00000601537 1176 ntTSL 1 (best)12.2□□□□□ -0.465e-10■■■■■ 120.6
SF3B1O75533 DIS3-205ENST00000545453 3651 ntTSL 1 (best) BASIC12.19□□□□□ -0.465e-6■■■■■ 120.6
SF3B1O75533 CCDC18-209ENST00000481180 1751 ntTSL 512.14□□□□□ -0.477e-8■■■■■ 120.6
SF3B1O75533 MKRN3-205ENST00000570112 470 ntTSL 212.11□□□□□ -0.475e-10■■■■■ 120.6
SF3B1O75533 DNM1L-230ENST00000553257 2699 ntTSL 2 BASIC12.1□□□□□ -0.475e-10■■■■■ 120.6
SF3B1O75533 PLEKHB2-208ENST00000439822 4177 ntTSL 3 BASIC12.05□□□□□ -0.481e-7■■■■■ 120.6
SF3B1O75533 RPL23A-205ENST00000472628 639 ntTSL 1 (best) BASIC11.98□□□□□ -0.495e-10■■■■■ 120.6
SF3B1O75533 AL359644.1-201ENST00000635872 471 ntTSL 3 BASIC11.95□□□□□ -0.55e-10■■■■■ 120.6
SF3B1O75533 SNX25-205ENST00000512853 1937 ntTSL 1 (best)11.95□□□□□ -0.55e-10■■■■■ 120.6
SF3B1O75533 TROVE2-211ENST00000506303 613 ntTSL 311.89□□□□□ -0.515e-10■■■■■ 120.6
SF3B1O75533 PCID2-201ENST00000246505 1786 ntTSL 2 BASIC11.88□□□□□ -0.515e-10■■■■■ 120.6
SF3B1O75533 LAMB1-204ENST00000393561 5766 ntTSL 5 BASIC11.84□□□□□ -0.512e-6■■■■■ 120.6
SF3B1O75533 AP2A2-203ENST00000524559 935 ntTSL 511.8□□□□□ -0.525e-10■■■■■ 120.6
SF3B1O75533 UCP2-205ENST00000541027 536 ntTSL 411.79□□□□□ -0.525e-10■■■■■ 120.6
SF3B1O75533 UCP2-206ENST00000542615 538 ntTSL 311.79□□□□□ -0.525e-10■■■■■ 120.6
SF3B1O75533 LONRF2-201ENST00000393437 13912 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.525e-10■■■■■ 120.6
SF3B1O75533 STAT1-212ENST00000540176 4216 ntTSL 5 BASIC11.75□□□□□ -0.535e-10■■■■■ 120.6
SF3B1O75533 ALPK1-217ENST00000515106 569 ntTSL 411.74□□□□□ -0.535e-6■■■■■ 120.6
SF3B1O75533 HDLBP-203ENST00000391975 6372 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.533e-6■■■■■ 120.6
SF3B1O75533 PCID2-216ENST00000622406 1937 ntTSL 5 BASIC11.66□□□□□ -0.545e-10■■■■■ 120.6
SF3B1O75533 DHPS-220ENST00000600864 464 ntTSL 511.51□□□□□ -0.575e-10■■■■■ 120.6
SF3B1O75533 LINC00174-201ENST00000412091 682 ntTSL 511.5□□□□□ -0.575e-10■■■■■ 120.6
SF3B1O75533 GFI1B-201ENST00000339463 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.582e-6■■■■■ 120.6
SF3B1O75533 BTN3A1-206ENST00000450085 580 ntTSL 411.39□□□□□ -0.595e-10■■■■■ 120.6
SF3B1O75533 BTN3A1-203ENST00000414912 2077 ntTSL 2 BASIC11.23□□□□□ -0.615e-10■■■■■ 120.6
SF3B1O75533 LINC00174-210ENST00000638592 2261 ntTSL 511.21□□□□□ -0.625e-10■■■■■ 120.6
SF3B1O75533 PARVB-205ENST00000444029 742 ntTSL 511.2□□□□□ -0.625e-6■■■■■ 120.6
SF3B1O75533 PPP1R21-209ENST00000476199 1075 ntTSL 511.09□□□□□ -0.635e-10■■■■■ 120.6
SF3B1O75533 AC007998.3-203ENST00000586741 571 ntTSL 411.09□□□□□ -0.635e-10■■■■■ 120.6
SF3B1O75533 NUP107-205ENST00000535718 2655 ntTSL 1 (best)10.98□□□□□ -0.655e-10■■■■■ 120.6
SF3B1O75533 LSS-208ENST00000474319 3601 ntTSL 210.92□□□□□ -0.665e-10■■■■■ 120.6
SF3B1O75533 RNF103-202ENST00000463333 686 ntTSL 510.92□□□□□ -0.665e-10■■■■■ 120.6
SF3B1O75533 DHPS-222ENST00000601639 1133 ntTSL 510.88□□□□□ -0.675e-10■■■■■ 120.6
SF3B1O75533 GGA2-214ENST00000569182 587 ntTSL 410.84□□□□□ -0.672e-7■■■■■ 120.6
SF3B1O75533 POLG-222ENST00000637264 3153 ntTSL 510.83□□□□□ -0.687e-8■■■■■ 120.6
SF3B1O75533 ALG13-223ENST00000495283 3236 ntTSL 210.8□□□□□ -0.685e-6■■■■■ 120.6
SF3B1O75533 EML4-202ENST00000401738 3797 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.682e-6■■■■■ 120.6
SF3B1O75533 NUP54-203ENST00000504173 314 ntTSL 310.79□□□□□ -0.682e-6■■■■■ 120.6
SF3B1O75533 RPL23A-202ENST00000394935 580 ntTSL 310.73□□□□□ -0.695e-10■■■■■ 120.6
SF3B1O75533 PMF1-204ENST00000466489 933 ntTSL 1 (best)10.71□□□□□ -0.695e-10■■■■■ 120.6
SF3B1O75533 TADA2A-205ENST00000615182 4253 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.72e-6■■■■■ 120.6
SF3B1O75533 BTN3A1-201ENST00000082468 3442 ntTSL 210.63□□□□□ -0.715e-10■■■■■ 120.6
SF3B1O75533 CORO2A-201ENST00000343933 5635 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.715e-6■■■■■ 120.6
SF3B1O75533 TTLL4-202ENST00000392102 4967 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.727e-9■■■■■ 120.6
SF3B1O75533 LYRM4-207ENST00000480566 941 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.735e-10■■■■■ 120.6
SF3B1O75533 MVK-209ENST00000540353 4109 ntTSL 210.49□□□□□ -0.735e-10■■■■■ 120.6
SF3B1O75533 PCSK6-207ENST00000558951 543 ntTSL 310.42□□□□□ -0.745e-10■■■■■ 120.6
SF3B1O75533 BTN3A1-202ENST00000289361 3434 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.755e-10■■■■■ 120.6
SF3B1O75533 ALPK1-205ENST00000504176 5203 ntAPPRIS ALT2 TSL 2 BASIC10.36□□□□□ -0.755e-6■■■■■ 120.6
SF3B1O75533 RPTOR-206ENST00000573746 688 ntTSL 210.34□□□□□ -0.755e-10■■■■■ 120.6
SF3B1O75533 RPN2-207ENST00000462163 712 ntTSL 310.28□□□□□ -0.765e-10■■■■■ 120.6
SF3B1O75533 SLC26A6-216ENST00000469693 574 ntTSL 310.28□□□□□ -0.765e-10■■■■■ 120.6
SF3B1O75533 ARID1A-203ENST00000430291 580 ntTSL 410.21□□□□□ -0.786e-19■■■■■ 120.6
SF3B1O75533 NUP54-211ENST00000512151 1385 ntTSL 210.19□□□□□ -0.782e-6■■■■■ 120.6
SF3B1O75533 STAT1-204ENST00000409465 3097 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.785e-10■■■■■ 120.6
SF3B1O75533 AC007998.3-201ENST00000593122 364 ntTSL 310.14□□□□□ -0.795e-10■■■■■ 120.6
SF3B1O75533 HPS5-206ENST00000531848 2160 ntTSL 5 BASIC10.14□□□□□ -0.795e-10■■■■■ 120.6
SF3B1O75533 ALG13-225ENST00000621367 3893 ntTSL 2 BASIC10.04□□□□□ -0.85e-6■■■■■ 120.6
SF3B1O75533 PLEKHB2-201ENST00000234115 4208 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.811e-7■■■■■ 120.6
SF3B1O75533 DNM1L-223ENST00000550093 570 ntTSL 210.01□□□□□ -0.815e-10■■■■■ 120.6
SF3B1O75533 DNM1L-208ENST00000546649 2097 ntTSL 29.76□□□□□ -0.855e-10■■■■■ 120.6
SF3B1O75533 ATXN10-208ENST00000476998 482 ntTSL 39.75□□□□□ -0.855e-10■■■■■ 120.6
SF3B1O75533 DNM1L-211ENST00000547312 2393 ntTSL 1 (best) BASIC9.74□□□□□ -0.855e-10■■■■■ 120.6
SF3B1O75533 ALG13-229ENST00000623148 3689 ntTSL 29.52□□□□□ -0.895e-6■■■■■ 120.6
SF3B1O75533 TUBD1-212ENST00000591611 596 ntTSL 39.45□□□□□ -0.95e-6■■■■■ 120.6
SF3B1O75533 ALG13-228ENST00000623144 3693 ntTSL 29.35□□□□□ -0.915e-6■■■■■ 120.6
SF3B1O75533 CBFA2T2-204ENST00000359606 7274 ntTSL 2 BASIC9.2□□□□□ -0.942e-7■■■■■ 120.6
SF3B1O75533 AP2A2-219ENST00000530801 557 ntTSL 49.14□□□□□ -0.955e-10■■■■■ 120.6
SF3B1O75533 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC9.14□□□□□ -0.957e-9■■■■■ 120.6
SF3B1O75533 ALPK1-203ENST00000458497 5410 ntAPPRIS P3 TSL 5 BASIC9.08□□□□□ -0.965e-6■■■■■ 120.6
SF3B1O75533 ALPK1-214ENST00000509722 3931 ntTSL 29.06□□□□□ -0.965e-6■■■■■ 120.6
SF3B1O75533 ARID1A-209ENST00000615191 3804 ntTSL 5 BASIC9.05□□□□□ -0.966e-19■■■■■ 120.6
SF3B1O75533 PCID2-213ENST00000484641 800 ntTSL 59.04□□□□□ -0.965e-10■■■■■ 120.6
SF3B1O75533 ALG13-204ENST00000436609 3812 ntTSL 5 BASIC9.03□□□□□ -0.965e-6■■■■■ 120.6
SF3B1O75533 AC007998.3-202ENST00000591141 697 ntTSL 3 BASIC9.01□□□□□ -0.975e-10■■■■■ 120.6
SF3B1O75533 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC9□□□□□ -0.975e-10■■■■■ 120.6
SF3B1O75533 SNX10-206ENST00000416246 823 ntTSL 28.95□□□□□ -0.985e-10■■■■■ 120.6
SF3B1O75533 SEMA3F-204ENST00000420831 442 ntTSL 58.9□□□□□ -0.985e-10■■■■■ 120.6
SF3B1O75533 RNMT-205ENST00000588457 1612 ntTSL 28.76□□□□□ -1.015e-10■■■■■ 120.6
SF3B1O75533 BTN3A1-210ENST00000506698 619 ntTSL 48.74□□□□□ -1.015e-10■■■■■ 120.6
SF3B1O75533 LYPLA1-203ENST00000517297 927 ntTSL 1 (best)8.7□□□□□ -1.025e-10■■■■■ 120.6
SF3B1O75533 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.045e-10■■■■■ 120.6
SF3B1O75533 AC093157.1-205ENST00000449473 1298 ntTSL 1 (best) BASIC8.53□□□□□ -1.045e-10■■■■■ 120.6
SF3B1O75533 RPL23A-203ENST00000394938 688 ntTSL 2 BASIC8.52□□□□□ -1.055e-10■■■■■ 120.6
SF3B1O75533 DRG1-203ENST00000433341 808 ntTSL 38.43□□□□□ -1.065e-10■■■■■ 120.6
SF3B1O75533 INO80C-212ENST00000592173 3245 ntTSL 2 BASIC8.35□□□□□ -1.075e-10■■■■■ 120.6
SF3B1O75533 AC093157.1-202ENST00000446527 1045 ntTSL 3 BASIC8.33□□□□□ -1.085e-10■■■■■ 120.6
SF3B1O75533 ALG13-201ENST00000251943 3997 ntTSL 2 BASIC8.33□□□□□ -1.085e-6■■■■■ 120.6
Retrieved 100 of 46,956 protein–RNA pairs in 1660.1 ms