RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 NISCHQ9Y2I1 1504 aa23.79■■□□□ 1.4
NUP54-203ENST00000504173 ABCC9O60706 1549 aa22.47■■□□□ 1.19
NUP54-203ENST00000504173 DNAJC5BQ9UF47 199 aa21.97■■□□□ 1.11
NUP54-203ENST00000504173 CCDC180Q9P1Z9 1646 aa21.62■■□□□ 1.05
NUP54-203ENST00000504173 RB1CC1Q8TDY2 1594 aa21.03■□□□□ 0.96
NUP54-203ENST00000504173 DNAJC5Q9H3Z4 198 aa20.93■□□□□ 0.94
NUP54-203ENST00000504173 PABPN1Q86U42 306 aaKnown RBP eCLIP20.73■□□□□ 0.91
NUP54-203ENST00000504173 NACADO15069 1562 aa20.68■□□□□ 0.9
NUP54-203ENST00000504173 UNC13AQ9UPW8 1703 aa20.47■□□□□ 0.87
NUP54-203ENST00000504173 BICRAQ9NZM4 1560 aa20.46■□□□□ 0.87
NUP54-203ENST00000504173 CECR2Q9BXF3 1484 aa20.39■□□□□ 0.85
NUP54-203ENST00000504173 CC2D2AQ9P2K1 1620 aa20.28■□□□□ 0.84
NUP54-203ENST00000504173 SHROOM4Q9ULL8 1493 aa20.21■□□□□ 0.83
NUP54-203ENST00000504173 MYO15BQ96JP2 1530 aa20.17■□□□□ 0.82
NUP54-203ENST00000504173 DCAF8L2P0C7V8 631 aa20.15■□□□□ 0.82
NUP54-203ENST00000504173 EIF4G1Q04637 1599 aaKnown RBP20.03■□□□□ 0.8
NUP54-203ENST00000504173 ZCCHC6Q5VYS8 1495 aaKnown RBP19.88■□□□□ 0.77
NUP54-203ENST00000504173 CUX2O14529 1486 aa19.87■□□□□ 0.77
NUP54-203ENST00000504173 DCAF1Q9Y4B6 1507 aa19.68■□□□□ 0.74
NUP54-203ENST00000504173 SCRIBQ14160 1630 aa19.54■□□□□ 0.72
NUP54-203ENST00000504173 ERCC6Q03468 1493 aa19.48■□□□□ 0.71
NUP54-203ENST00000504173 TRIM41Q8WV44 630 aa19.47■□□□□ 0.71
NUP54-203ENST00000504173 NCAPD3P42695 1498 aa19.13■□□□□ 0.65
NUP54-203ENST00000504173 THOC2Q8NI27 1593 aaKnown RBP19.1■□□□□ 0.65
NUP54-203ENST00000504173 NESP48681 1621 aa19.03■□□□□ 0.64
NUP54-203ENST00000504173 ATAD2BQ9ULI0 1458 aa18.9■□□□□ 0.62
NUP54-203ENST00000504173 HMGXB3Q12766 1538 aa18.9■□□□□ 0.62
NUP54-203ENST00000504173 SMARCA2P51531 1590 aa18.82■□□□□ 0.6
NUP54-203ENST00000504173 LAMC3Q9Y6N6 1575 aa18.81■□□□□ 0.6
NUP54-203ENST00000504173 BAZ1AQ9NRL2 1556 aaPredicted RBP18.76■□□□□ 0.59
NUP54-203ENST00000504173 OSCARQ8IYS5 282 aa18.74■□□□□ 0.59
NUP54-203ENST00000504173 PDS5BQ9NTI5 1447 aa18.74■□□□□ 0.59
NUP54-203ENST00000504173 KIF21AQ7Z4S6 1674 aa18.73■□□□□ 0.59
NUP54-203ENST00000504173 WDR62O43379 1518 aa18.64■□□□□ 0.57
NUP54-203ENST00000504173 MRC2Q9UBG0 1479 aa18.63■□□□□ 0.57
NUP54-203ENST00000504173 BAZ1BQ9UIG0 1483 aaKnown RBP18.62■□□□□ 0.57
NUP54-203ENST00000504173 SMARCA4P51532 1647 aa18.6■□□□□ 0.57
NUP54-203ENST00000504173 RIMBP3CA6NJZ7 1639 aa18.59■□□□□ 0.57
NUP54-203ENST00000504173 RIMBP3BA6NNM3 1639 aa18.59■□□□□ 0.57
NUP54-203ENST00000504173 RIMBP3Q9UFD9 1639 aa18.59■□□□□ 0.57
NUP54-203ENST00000504173 AEBP2Q6ZN18 517 aaPredicted RBP18.57■□□□□ 0.56
NUP54-203ENST00000504173 PEG3Q9GZU2 1588 aa18.51■□□□□ 0.55
NUP54-203ENST00000504173 CADPSQ9ULU8 1353 aa18.46■□□□□ 0.55
NUP54-203ENST00000504173 ARHGEF11O15085 1522 aa18.46■□□□□ 0.55
NUP54-203ENST00000504173 TRHP20396 242 aaPredicted RBP18.38■□□□□ 0.53
NUP54-203ENST00000504173 MROH2BQ7Z745 1585 aa18.34■□□□□ 0.53
NUP54-203ENST00000504173 CEP164Q9UPV0 1460 aa18.33■□□□□ 0.53
NUP54-203ENST00000504173 CYB5RLQ6IPT4 315 aa18.3■□□□□ 0.52
NUP54-203ENST00000504173 FANCD2Q9BXW9 1451 aa18.23■□□□□ 0.51
NUP54-203ENST00000504173 RSF1Q96T23 1441 aaPredicted RBP18.23■□□□□ 0.51
NUP54-203ENST00000504173 ARAP1Q96P48 1450 aa18.21■□□□□ 0.51
NUP54-203ENST00000504173 WIZO95785 1651 aa18.15■□□□□ 0.5
NUP54-203ENST00000504173 URB2Q14146 1524 aaKnown RBP18.15■□□□□ 0.5
NUP54-203ENST00000504173 CFTRP13569 1480 aa18.07■□□□□ 0.48
NUP54-203ENST00000504173 ZNF608Q9ULD9 1512 aaPredicted RBP18.06■□□□□ 0.48
NUP54-203ENST00000504173 IFT140Q96RY7 1462 aa18.04■□□□□ 0.48
NUP54-203ENST00000504173 TOP2AP11388 1531 aaKnown RBP17.99■□□□□ 0.47
NUP54-203ENST00000504173 SUPT5HO00267 1087 aaKnown RBP17.99■□□□□ 0.47
NUP54-203ENST00000504173 ILDR1Q86SU0 546 aaPredicted RBP17.99■□□□□ 0.47
NUP54-203ENST00000504173 EIF4G3O43432 1585 aaKnown RBP17.91■□□□□ 0.46
NUP54-203ENST00000504173 CHD1O14646 1710 aa17.91■□□□□ 0.46
NUP54-203ENST00000504173 CLASP1Q7Z460 1538 aa17.78■□□□□ 0.44
NUP54-203ENST00000504173 TOPBP1Q92547 1522 aa17.78■□□□□ 0.44
NUP54-203ENST00000504173 CCDC88BA6NC98 1476 aa17.76■□□□□ 0.43
NUP54-203ENST00000504173 AQRO60306 1485 aaKnown RBP eCLIP17.76■□□□□ 0.43
NUP54-203ENST00000504173 FBLN2P98095 1184 aa17.75■□□□□ 0.43
NUP54-203ENST00000504173 PRDM2Q13029 1718 aa17.72■□□□□ 0.43
NUP54-203ENST00000504173 ABCC8Q09428 1581 aa17.72■□□□□ 0.43
NUP54-203ENST00000504173 TARBP1Q13395 1621 aaKnown RBP17.71■□□□□ 0.43
NUP54-203ENST00000504173 SYNJ1O43426 1573 aa17.65■□□□□ 0.42
NUP54-203ENST00000504173 GAPVD1Q14C86 1478 aa17.64■□□□□ 0.41
NUP54-203ENST00000504173 DNMBPQ6XZF7 1577 aa17.63■□□□□ 0.41
NUP54-203ENST00000504173 KDM4FA0A1W2PPD8 638 aa17.56■□□□□ 0.4
NUP54-203ENST00000504173 SNAPC4Q5SXM2 1469 aa17.56■□□□□ 0.4
NUP54-203ENST00000504173 POLA1P09884 1462 aaPredicted RBP17.54■□□□□ 0.4
NUP54-203ENST00000504173 MAGI1Q96QZ7 1491 aaPredicted RBP17.53■□□□□ 0.4
NUP54-203ENST00000504173 CHMP7Q8WUX9 453 aaPredicted RBP17.53■□□□□ 0.4
NUP54-203ENST00000504173 WDR97A6NE52 1622 aa17.52■□□□□ 0.4
NUP54-203ENST00000504173 TDRD9Q8NDG6 1382 aaKnown RBP17.49■□□□□ 0.39
NUP54-203ENST00000504173 SYNJ2O15056 1496 aa17.47■□□□□ 0.39
NUP54-203ENST00000504173 KIF13AQ9H1H9 1805 aa17.47■□□□□ 0.39
NUP54-203ENST00000504173 RAD54L2Q9Y4B4 1467 aa17.44■□□□□ 0.38
NUP54-203ENST00000504173 SOGA1O94964 1423 aa17.41■□□□□ 0.38
NUP54-203ENST00000504173 GRIN2BQ13224 1484 aa17.41■□□□□ 0.38
NUP54-203ENST00000504173 ERCC6L2Q5T890 1561 aa17.36■□□□□ 0.37
NUP54-203ENST00000504173 ABCC10Q5T3U5 1492 aa17.31■□□□□ 0.36
NUP54-203ENST00000504173 KDM6BO15054 1643 aa17.29■□□□□ 0.36
NUP54-203ENST00000504173 CEP170Q5SW79 1584 aa17.28■□□□□ 0.36
NUP54-203ENST00000504173 FGD5Q6ZNL6 1462 aa17.26■□□□□ 0.35
NUP54-203ENST00000504173 FBXO41Q8TF61 875 aa17.26■□□□□ 0.35
NUP54-203ENST00000504173 HECW2Q9P2P5 1572 aa17.26■□□□□ 0.35
NUP54-203ENST00000504173 FAM69CQ0P6D2 419 aa17.25■□□□□ 0.35
NUP54-203ENST00000504173 SHROOM2Q13796 1616 aa17.22■□□□□ 0.35
NUP54-203ENST00000504173 MAPKBP1O60336 1514 aa17.21■□□□□ 0.35
NUP54-203ENST00000504173 DIP2BQ9P265 1576 aa17.21■□□□□ 0.35
NUP54-203ENST00000504173 NUP160Q12769 1436 aa17.21■□□□□ 0.34
NUP54-203ENST00000504173 PBRM1Q86U86 1689 aa17.2■□□□□ 0.34
NUP54-203ENST00000504173 CUX1P39880 1505 aa17.2■□□□□ 0.34
NUP54-203ENST00000504173 WRNQ14191 1432 aaPredicted RBP eCLIP17.19■□□□□ 0.34
NUP54-203ENST00000504173 ADGRL1O94910 1474 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms