RNA–Protein interactions for RNA: ENST00000512853.5

SNX25-205, Transcript of sorting nexin 25, humanhuman

TSL 1 (best)

Gene SNX25, Length 1,937 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25-205ENST00000512853 NISCHQ9Y2I1 1504 aa23.64■■□□□ 1.37
SNX25-205ENST00000512853 CCDC180Q9P1Z9 1646 aa20.14■□□□□ 0.82
SNX25-205ENST00000512853 ZCCHC6Q5VYS8 1495 aaKnown RBP20.09■□□□□ 0.81
SNX25-205ENST00000512853 SHROOM4Q9ULL8 1493 aa20.06■□□□□ 0.8
SNX25-205ENST00000512853 SUPT5HO00267 1087 aaKnown RBP19.74■□□□□ 0.75
SNX25-205ENST00000512853 DCAF1Q9Y4B6 1507 aa19.51■□□□□ 0.71
SNX25-205ENST00000512853 MYO15BQ96JP2 1530 aa19.49■□□□□ 0.71
SNX25-205ENST00000512853 CHIC1Q5VXU3 224 aa19.43■□□□□ 0.7
SNX25-205ENST00000512853 HRCP23327 699 aa19.25■□□□□ 0.67
SNX25-205ENST00000512853 DCAF8L2P0C7V8 631 aa19.15■□□□□ 0.66
SNX25-205ENST00000512853 ABCC9O60706 1549 aa19.03■□□□□ 0.64
SNX25-205ENST00000512853 PCGF6Q9BYE7 350 aa18.94■□□□□ 0.62
SNX25-205ENST00000512853 LOC105371045A0A1W2PR82 267 aa18.74■□□□□ 0.59
SNX25-205ENST00000512853 RSF1Q96T23 1441 aaPredicted RBP18.74■□□□□ 0.59
SNX25-205ENST00000512853 SCRIBQ14160 1630 aa18.73■□□□□ 0.59
SNX25-205ENST00000512853 PPARGC1BQ86YN6 1023 aaKnown RBP18.67■□□□□ 0.58
SNX25-205ENST00000512853 RB1CC1Q8TDY2 1594 aa18.65■□□□□ 0.58
SNX25-205ENST00000512853 TRIM26Q12899 539 aaPredicted RBP18.64■□□□□ 0.58
SNX25-205ENST00000512853 NACADO15069 1562 aa18.49■□□□□ 0.55
SNX25-205ENST00000512853 TRIM41Q8WV44 630 aa18.43■□□□□ 0.54
SNX25-205ENST00000512853 ZEB1P37275 1124 aaPredicted RBP18.4■□□□□ 0.54
SNX25-205ENST00000512853 MROH2BQ7Z745 1585 aa18.35■□□□□ 0.53
SNX25-205ENST00000512853 CECR2Q9BXF3 1484 aa18.34■□□□□ 0.53
SNX25-205ENST00000512853 EIF4G1Q04637 1599 aaKnown RBP18.28■□□□□ 0.52
SNX25-205ENST00000512853 BAZ1AQ9NRL2 1556 aaPredicted RBP18.28■□□□□ 0.52
SNX25-205ENST00000512853 WIZO95785 1651 aa18.28■□□□□ 0.52
SNX25-205ENST00000512853 FAM9AQ8IZU1 332 aaPredicted RBP18.19■□□□□ 0.5
SNX25-205ENST00000512853 TOP2AP11388 1531 aaKnown RBP18.06■□□□□ 0.48
SNX25-205ENST00000512853 SMARCA4P51532 1647 aa18■□□□□ 0.47
SNX25-205ENST00000512853 SMARCA2P51531 1590 aa17.96■□□□□ 0.47
SNX25-205ENST00000512853 WRNQ14191 1432 aaPredicted RBP eCLIP17.95■□□□□ 0.46
SNX25-205ENST00000512853 EHMT2Q96KQ7 1210 aa17.93■□□□□ 0.46
SNX25-205ENST00000512853 UNC13AQ9UPW8 1703 aa17.9■□□□□ 0.46
SNX25-205ENST00000512853 ABCC8Q09428 1581 aa17.9■□□□□ 0.46
SNX25-205ENST00000512853 CCDC88BA6NC98 1476 aa17.9■□□□□ 0.46
SNX25-205ENST00000512853 EEA1Q15075 1411 aa17.84■□□□□ 0.45
SNX25-205ENST00000512853 PELP1Q8IZL8 1130 aaKnown RBP17.84■□□□□ 0.45
SNX25-205ENST00000512853 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
SNX25-205ENST00000512853 CEP162Q5TB80 1403 aa17.81■□□□□ 0.44
SNX25-205ENST00000512853 TNIKQ9UKE5 1360 aa17.8■□□□□ 0.44
SNX25-205ENST00000512853 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.75■□□□□ 0.43
SNX25-205ENST00000512853 CCER1Q8TC90 406 aaPredicted RBP17.74■□□□□ 0.43
SNX25-205ENST00000512853 SOGA1O94964 1423 aa17.74■□□□□ 0.43
SNX25-205ENST00000512853 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
SNX25-205ENST00000512853 GOLGA3Q08378 1498 aa17.68■□□□□ 0.42
SNX25-205ENST00000512853 RUSC2Q8N2Y8 1516 aa17.64■□□□□ 0.41
SNX25-205ENST00000512853 CSRNP3Q8WYN3 585 aa17.63■□□□□ 0.41
SNX25-205ENST00000512853 BICRAQ9NZM4 1560 aa17.62■□□□□ 0.41
SNX25-205ENST00000512853 KIF21BO75037 1637 aa17.62■□□□□ 0.41
SNX25-205ENST00000512853 ACIN1Q9UKV3 1341 aaKnown RBP17.61■□□□□ 0.41
SNX25-205ENST00000512853 SYNJ1O43426 1573 aa17.55■□□□□ 0.4
SNX25-205ENST00000512853 CEP164Q9UPV0 1460 aa17.55■□□□□ 0.4
SNX25-205ENST00000512853 DIEXFQ68CQ4 756 aaKnown RBP17.55■□□□□ 0.4
SNX25-205ENST00000512853 NEUROD1Q13562 356 aa17.51■□□□□ 0.39
SNX25-205ENST00000512853 UBTFP17480 764 aaKnown RBP17.49■□□□□ 0.39
SNX25-205ENST00000512853 BAZ1BQ9UIG0 1483 aaKnown RBP17.49■□□□□ 0.39
SNX25-205ENST00000512853 CENPBP07199 599 aaPredicted RBP17.47■□□□□ 0.39
SNX25-205ENST00000512853 TTBK1Q5TCY1 1321 aaPredicted RBP17.46■□□□□ 0.39
SNX25-205ENST00000512853 CLIP1P30622 1438 aa17.43■□□□□ 0.38
SNX25-205ENST00000512853 VPS8Q8N3P4 1428 aa17.43■□□□□ 0.38
SNX25-205ENST00000512853 ATAD2BQ9ULI0 1458 aa17.42■□□□□ 0.38
SNX25-205ENST00000512853 ZNF316A6NFI3 1004 aaPredicted RBP17.41■□□□□ 0.38
SNX25-205ENST00000512853 TOP2BQ02880 1626 aa17.36■□□□□ 0.37
SNX25-205ENST00000512853 BIVM-ERCC5R4GMW8 1640 aa17.34■□□□□ 0.37
SNX25-205ENST00000512853 PABPN1Q86U42 306 aaKnown RBP eCLIP17.34■□□□□ 0.37
SNX25-205ENST00000512853 GTF3C3Q9Y5Q9 886 aa17.34■□□□□ 0.37
SNX25-205ENST00000512853 RAPGEF2Q9Y4G8 1499 aa17.34■□□□□ 0.37
SNX25-205ENST00000512853 ERICH3Q5RHP9 1530 aa17.29■□□□□ 0.36
SNX25-205ENST00000512853 HNRNPUL2Q1KMD3 747 aaKnown RBP17.23■□□□□ 0.35
SNX25-205ENST00000512853 PRXQ9BXM0 1461 aa17.21■□□□□ 0.35
SNX25-205ENST00000512853 ARAP1Q96P48 1450 aa17.19■□□□□ 0.34
SNX25-205ENST00000512853 APLP2Q06481 763 aa17.17■□□□□ 0.34
SNX25-205ENST00000512853 CLSPNQ9HAW4 1339 aa17.17■□□□□ 0.34
SNX25-205ENST00000512853 HMGXB3Q12766 1538 aa17.15■□□□□ 0.34
SNX25-205ENST00000512853 MIER1Q8N108 512 aa17.13■□□□□ 0.33
SNX25-205ENST00000512853 DHX57Q6P158 1386 aaKnown RBP17.09■□□□□ 0.33
SNX25-205ENST00000512853 CUX1P39880 1505 aa17.09■□□□□ 0.33
SNX25-205ENST00000512853 CUX2O14529 1486 aa17.08■□□□□ 0.32
SNX25-205ENST00000512853 RRBP1Q9P2E9 1410 aaKnown RBP17.07■□□□□ 0.32
SNX25-205ENST00000512853 NCAPD3P42695 1498 aa17.06■□□□□ 0.32
SNX25-205ENST00000512853 YTHDC1Q96MU7 727 aaKnown RBP17.05■□□□□ 0.32
SNX25-205ENST00000512853 KIF27Q86VH2 1401 aa17.03■□□□□ 0.32
SNX25-205ENST00000512853 PRDM2Q13029 1718 aa17.02■□□□□ 0.31
SNX25-205ENST00000512853 MYT1Q01538 1121 aa17.02■□□□□ 0.31
SNX25-205ENST00000512853 CFTRP13569 1480 aa16.98■□□□□ 0.31
SNX25-205ENST00000512853 ARHGAP35Q9NRY4 1499 aa16.97■□□□□ 0.31
SNX25-205ENST00000512853 RANGAP1P46060 587 aaPredicted RBP16.96■□□□□ 0.3
SNX25-205ENST00000512853 KANK4Q5T7N3 995 aaPredicted RBP16.96■□□□□ 0.3
SNX25-205ENST00000512853 MAP3K1Q13233 1512 aa16.93■□□□□ 0.3
SNX25-205ENST00000512853 CCNB3Q8WWL7 1395 aa16.92■□□□□ 0.3
SNX25-205ENST00000512853 TIAM1Q13009 1591 aa16.88■□□□□ 0.29
SNX25-205ENST00000512853 MAPKBP1O60336 1514 aa16.83■□□□□ 0.28
SNX25-205ENST00000512853 CFAP43Q8NDM7 1665 aa16.82■□□□□ 0.28
SNX25-205ENST00000512853 IGF1RP08069 1367 aa16.79■□□□□ 0.28
SNX25-205ENST00000512853 RAB3GAP2Q9H2M9 1393 aa16.77■□□□□ 0.28
SNX25-205ENST00000512853 LRRC9Q6ZRR7 1453 aa16.76■□□□□ 0.27
SNX25-205ENST00000512853 FGD5Q6ZNL6 1462 aa16.73■□□□□ 0.27
SNX25-205ENST00000512853 SETD5Q9C0A6 1442 aa16.72■□□□□ 0.27
SNX25-205ENST00000512853 PCF11O94913 1555 aaKnown RBP16.72■□□□□ 0.27
SNX25-205ENST00000512853 FHAD1B1AJZ9 1412 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms