Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV17A0A0B4J275 AC010980.1-201ENST00000587192 1142 ntBASIC22.46■■□□□ 1.19
TRAV17A0A0B4J275 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC22.46■■□□□ 1.19
TRAV17A0A0B4J275 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV17A0A0B4J275 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.46■■□□□ 1.19
TRAV17A0A0B4J275 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.46■■□□□ 1.19
TRAV17A0A0B4J275 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV17A0A0B4J275 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TRAV17A0A0B4J275 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
TRAV17A0A0B4J275 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.45■■□□□ 1.18
TRAV17A0A0B4J275 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.45■■□□□ 1.18
TRAV17A0A0B4J275 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TRAV17A0A0B4J275 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TRAV17A0A0B4J275 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.44■■□□□ 1.18
TRAV17A0A0B4J275 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
TRAV17A0A0B4J275 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.44■■□□□ 1.18
TRAV17A0A0B4J275 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
TRAV17A0A0B4J275 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
TRAV17A0A0B4J275 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRAV17A0A0B4J275 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRAV17A0A0B4J275 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TRAV17A0A0B4J275 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.43■■□□□ 1.18
TRAV17A0A0B4J275 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.42■■□□□ 1.18
TRAV17A0A0B4J275 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TRAV17A0A0B4J275 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
TRAV17A0A0B4J275 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC22.41■■□□□ 1.18
TRAV17A0A0B4J275 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.41■■□□□ 1.18
TRAV17A0A0B4J275 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.41■■□□□ 1.18
TRAV17A0A0B4J275 AL035685.1-201ENST00000636663 812 ntBASIC22.41■■□□□ 1.18
TRAV17A0A0B4J275 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TRAV17A0A0B4J275 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 YBX1P4-201ENST00000392794 808 ntBASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 AL451085.2-201ENST00000605085 799 ntBASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 KRT8P33-201ENST00000508125 1423 ntBASIC22.4■■□□□ 1.18
TRAV17A0A0B4J275 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TRAV17A0A0B4J275 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
TRAV17A0A0B4J275 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
TRAV17A0A0B4J275 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TRAV17A0A0B4J275 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
TRAV17A0A0B4J275 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRAV17A0A0B4J275 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TRAV17A0A0B4J275 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.37■■□□□ 1.17
TRAV17A0A0B4J275 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC22.37■■□□□ 1.17
TRAV17A0A0B4J275 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC22.36■■□□□ 1.17
TRAV17A0A0B4J275 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TRAV17A0A0B4J275 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
TRAV17A0A0B4J275 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
TRAV17A0A0B4J275 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.36■■□□□ 1.17
TRAV17A0A0B4J275 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRAV17A0A0B4J275 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TRAV17A0A0B4J275 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRAV17A0A0B4J275 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
TRAV17A0A0B4J275 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.35■■□□□ 1.17
TRAV17A0A0B4J275 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TRAV17A0A0B4J275 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TRAV17A0A0B4J275 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
TRAV17A0A0B4J275 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.34■■□□□ 1.17
TRAV17A0A0B4J275 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
TRAV17A0A0B4J275 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TRAV17A0A0B4J275 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC22.33■■□□□ 1.17
TRAV17A0A0B4J275 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TRAV17A0A0B4J275 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.33■■□□□ 1.17
TRAV17A0A0B4J275 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC22.32■■□□□ 1.16
TRAV17A0A0B4J275 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.32■■□□□ 1.16
TRAV17A0A0B4J275 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC22.32■■□□□ 1.16
TRAV17A0A0B4J275 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
TRAV17A0A0B4J275 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.32■■□□□ 1.16
TRAV17A0A0B4J275 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TRAV17A0A0B4J275 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
TRAV17A0A0B4J275 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 MTX2-204ENST00000443241 799 ntTSL 3 BASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 AC103834.1-201ENST00000520383 144 ntBASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 PVT1_1.1-201ENST00000615125 194 ntBASIC22.31■■□□□ 1.16
TRAV17A0A0B4J275 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.3■■□□□ 1.16
TRAV17A0A0B4J275 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.3■■□□□ 1.16
TRAV17A0A0B4J275 MIR4508-201ENST00000584178 70 ntBASIC22.3■■□□□ 1.16
TRAV17A0A0B4J275 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAV17A0A0B4J275 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
TRAV17A0A0B4J275 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TRAV17A0A0B4J275 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.29■■□□□ 1.16
TRAV17A0A0B4J275 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms