RNA–Protein interactions for RNA: ENST00000368010.3

PFDN2-201, Transcript of prefoldin subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PFDN2, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN2-201ENST00000368010 NISCHQ9Y2I1 1504 aa58.51■■■■■ 6.96
PFDN2-201ENST00000368010 CCDC180Q9P1Z9 1646 aa52.12■■■■■ 5.93
PFDN2-201ENST00000368010 ABCC9O60706 1549 aa51.26■■■■■ 5.8
PFDN2-201ENST00000368010 RB1CC1Q8TDY2 1594 aa49.2■■■■■ 5.47
PFDN2-201ENST00000368010 NACADO15069 1562 aa49.08■■■■■ 5.45
PFDN2-201ENST00000368010 DCAF8L2P0C7V8 631 aa49■■■■■ 5.43
PFDN2-201ENST00000368010 MYO15BQ96JP2 1530 aa48.71■■■■■ 5.39
PFDN2-201ENST00000368010 ZCCHC6Q5VYS8 1495 aaKnown RBP48.69■■■■■ 5.39
PFDN2-201ENST00000368010 DCAF1Q9Y4B6 1507 aa48.4■■■■■ 5.34
PFDN2-201ENST00000368010 UNC13AQ9UPW8 1703 aa48■■■■■ 5.27
PFDN2-201ENST00000368010 PABPN1Q86U42 306 aaKnown RBP eCLIP47.85■■■■■ 5.25
PFDN2-201ENST00000368010 BICRAQ9NZM4 1560 aa47.68■■■■■ 5.22
PFDN2-201ENST00000368010 SCRIBQ14160 1630 aa47.55■■■■■ 5.2
PFDN2-201ENST00000368010 SHROOM4Q9ULL8 1493 aa47.22■■■■■ 5.15
PFDN2-201ENST00000368010 DNAJC5BQ9UF47 199 aa47.22■■■■■ 5.15
PFDN2-201ENST00000368010 EIF4G1Q04637 1599 aaKnown RBP46.47■■■■■ 5.03
PFDN2-201ENST00000368010 CC2D2AQ9P2K1 1620 aa46.34■■■■■ 5.01
PFDN2-201ENST00000368010 CECR2Q9BXF3 1484 aa46.09■■■■■ 4.97
PFDN2-201ENST00000368010 SMARCA4P51532 1647 aa45.44■■■■■ 4.87
PFDN2-201ENST00000368010 BAZ1AQ9NRL2 1556 aaPredicted RBP45.38■■■■■ 4.86
PFDN2-201ENST00000368010 NCAPD3P42695 1498 aa45.29■■■■■ 4.84
PFDN2-201ENST00000368010 ATAD2BQ9ULI0 1458 aa45.28■■■■■ 4.84
PFDN2-201ENST00000368010 SMARCA2P51531 1590 aa45.22■■■■■ 4.83
PFDN2-201ENST00000368010 MROH2BQ7Z745 1585 aa45.07■■■■■ 4.81
PFDN2-201ENST00000368010 HMGXB3Q12766 1538 aa45.05■■■■■ 4.8
PFDN2-201ENST00000368010 PEG3Q9GZU2 1588 aa45.01■■■■■ 4.8
PFDN2-201ENST00000368010 BAZ1BQ9UIG0 1483 aaKnown RBP44.91■■■■■ 4.78
PFDN2-201ENST00000368010 WIZO95785 1651 aa44.56■■■■■ 4.72
PFDN2-201ENST00000368010 RSF1Q96T23 1441 aaPredicted RBP44.48■■■■■ 4.71
PFDN2-201ENST00000368010 NESP48681 1621 aa44.26■■■■■ 4.68
PFDN2-201ENST00000368010 ERCC6Q03468 1493 aa44.23■■■■■ 4.67
PFDN2-201ENST00000368010 LAMC3Q9Y6N6 1575 aa44.14■■■■■ 4.66
PFDN2-201ENST00000368010 TOP2AP11388 1531 aaKnown RBP44.11■■■■■ 4.65
PFDN2-201ENST00000368010 CADPSQ9ULU8 1353 aa43.96■■■■■ 4.63
PFDN2-201ENST00000368010 PDS5BQ9NTI5 1447 aa43.87■■■■■ 4.61
PFDN2-201ENST00000368010 CUX2O14529 1486 aa43.84■■■■■ 4.61
PFDN2-201ENST00000368010 KIF21AQ7Z4S6 1674 aa43.71■■■■■ 4.59
PFDN2-201ENST00000368010 THOC2Q8NI27 1593 aaKnown RBP43.65■■■■■ 4.58
PFDN2-201ENST00000368010 CFTRP13569 1480 aa43.64■■■■■ 4.58
PFDN2-201ENST00000368010 CCDC88BA6NC98 1476 aa43.57■■■■■ 4.57
PFDN2-201ENST00000368010 FANCD2Q9BXW9 1451 aa43.46■■■■■ 4.55
PFDN2-201ENST00000368010 CEP164Q9UPV0 1460 aa43.45■■■■■ 4.55
PFDN2-201ENST00000368010 MRC2Q9UBG0 1479 aa43.43■■■■■ 4.54
PFDN2-201ENST00000368010 WDR62O43379 1518 aa43.29■■■■■ 4.52
PFDN2-201ENST00000368010 PRDM2Q13029 1718 aa43.25■■■■■ 4.51
PFDN2-201ENST00000368010 SUPT5HO00267 1087 aaKnown RBP43.17■■■■■ 4.5
PFDN2-201ENST00000368010 URB2Q14146 1524 aaKnown RBP43.02■■■■■ 4.48
PFDN2-201ENST00000368010 DNAJC5Q9H3Z4 198 aa42.76■■■■■ 4.44
PFDN2-201ENST00000368010 TOPBP1Q92547 1522 aa42.73■■■■■ 4.43
PFDN2-201ENST00000368010 ABCC8Q09428 1581 aa42.73■■■■■ 4.43
PFDN2-201ENST00000368010 DNMBPQ6XZF7 1577 aa42.66■■■■■ 4.42
PFDN2-201ENST00000368010 IFT140Q96RY7 1462 aa42.55■■■■■ 4.4
PFDN2-201ENST00000368010 POLA1P09884 1462 aaPredicted RBP42.36■■■■■ 4.37
PFDN2-201ENST00000368010 ZNF608Q9ULD9 1512 aaPredicted RBP42.35■■■■■ 4.37
PFDN2-201ENST00000368010 CUX1P39880 1505 aa42.3■■■■■ 4.36
PFDN2-201ENST00000368010 TARBP1Q13395 1621 aaKnown RBP42.27■■■■■ 4.36
PFDN2-201ENST00000368010 FGD5Q6ZNL6 1462 aa42.23■■■■■ 4.35
PFDN2-201ENST00000368010 SOGA1O94964 1423 aa42.18■■■■■ 4.34
PFDN2-201ENST00000368010 EIF4G3O43432 1585 aaKnown RBP42.18■■■■■ 4.34
PFDN2-201ENST00000368010 RAD54L2Q9Y4B4 1467 aa42.16■■■■■ 4.34
PFDN2-201ENST00000368010 AQRO60306 1485 aaKnown RBP eCLIP42.07■■■■■ 4.33
PFDN2-201ENST00000368010 WRNQ14191 1432 aaPredicted RBP eCLIP41.97■■■■■ 4.31
PFDN2-201ENST00000368010 OSCARQ8IYS5 282 aa41.97■■■■■ 4.31
PFDN2-201ENST00000368010 TDRD9Q8NDG6 1382 aaKnown RBP41.97■■■■■ 4.31
PFDN2-201ENST00000368010 WDR97A6NE52 1622 aa41.95■■■■■ 4.31
PFDN2-201ENST00000368010 TOP2BQ02880 1626 aa41.87■■■■■ 4.29
PFDN2-201ENST00000368010 BIVM-ERCC5R4GMW8 1640 aa41.87■■■■■ 4.29
PFDN2-201ENST00000368010 SYNJ1O43426 1573 aa41.85■■■■■ 4.29
PFDN2-201ENST00000368010 ABCA10Q8WWZ4 1543 aa41.79■■■■■ 4.28
PFDN2-201ENST00000368010 GRIN2BQ13224 1484 aa41.73■■■■■ 4.27
PFDN2-201ENST00000368010 SNAPC4Q5SXM2 1469 aa41.71■■■■■ 4.27
PFDN2-201ENST00000368010 GAPVD1Q14C86 1478 aa41.69■■■■■ 4.26
PFDN2-201ENST00000368010 CHD1O14646 1710 aa41.66■■■■■ 4.26
PFDN2-201ENST00000368010 FBLN2P98095 1184 aa41.65■■■■■ 4.26
PFDN2-201ENST00000368010 ABCA5Q8WWZ7 1642 aa41.65■■■■■ 4.26
PFDN2-201ENST00000368010 MAGI1Q96QZ7 1491 aaPredicted RBP41.65■■■■■ 4.26
PFDN2-201ENST00000368010 PBRM1Q86U86 1689 aa41.58■■■■■ 4.25
PFDN2-201ENST00000368010 CHMP7Q8WUX9 453 aaPredicted RBP41.49■■■■■ 4.23
PFDN2-201ENST00000368010 SYNJ2O15056 1496 aa41.48■■■■■ 4.23
PFDN2-201ENST00000368010 RIMBP3CA6NJZ7 1639 aa41.3■■■■■ 4.2
PFDN2-201ENST00000368010 RIMBP3BA6NNM3 1639 aa41.3■■■■■ 4.2
PFDN2-201ENST00000368010 RIMBP3Q9UFD9 1639 aa41.3■■■■■ 4.2
PFDN2-201ENST00000368010 ARHGEF11O15085 1522 aa41.29■■■■■ 4.2
PFDN2-201ENST00000368010 ERICH3Q5RHP9 1530 aa41.29■■■■■ 4.2
PFDN2-201ENST00000368010 TRIM41Q8WV44 630 aa41.28■■■■■ 4.2
PFDN2-201ENST00000368010 ADAMTS12P58397 1594 aa41.28■■■■■ 4.2
PFDN2-201ENST00000368010 CLASP1Q7Z460 1538 aa41.23■■■■■ 4.19
PFDN2-201ENST00000368010 FHAD1B1AJZ9 1412 aa41.21■■■■■ 4.19
PFDN2-201ENST00000368010 GRIN2AQ12879 1464 aa41.19■■■■■ 4.18
PFDN2-201ENST00000368010 KIF27Q86VH2 1401 aa41.12■■■■■ 4.17
PFDN2-201ENST00000368010 NUP160Q12769 1436 aa41.01■■■■■ 4.16
PFDN2-201ENST00000368010 CEP170Q5SW79 1584 aa40.98■■■■■ 4.15
PFDN2-201ENST00000368010 IGF1RP08069 1367 aa40.94■■■■■ 4.14
PFDN2-201ENST00000368010 ARAP1Q96P48 1450 aa40.94■■■■■ 4.14
PFDN2-201ENST00000368010 CYB5RLQ6IPT4 315 aa40.92■■■■■ 4.14
PFDN2-201ENST00000368010 CUL7Q14999 1698 aa40.87■■■■■ 4.13
PFDN2-201ENST00000368010 CARMIL1Q5VZK9 1371 aa40.72■■■■■ 4.11
PFDN2-201ENST00000368010 SHROOM2Q13796 1616 aa40.71■■■■■ 4.11
PFDN2-201ENST00000368010 RUSC2Q8N2Y8 1516 aa40.68■■■■■ 4.1
PFDN2-201ENST00000368010 ERCC6L2Q5T890 1561 aa40.63■■■■■ 4.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms