RNA–Protein interactions for RNA: ENST00000612672.1

MMP28-203, Transcript of matrix metallopeptidase 28, humanhuman

TSL 1 (best) BASIC

Gene MMP28, Length 1,092 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-203ENST00000612672 NISCHQ9Y2I1 1504 aa59.87■■■■■ 7.17
MMP28-203ENST00000612672 ABCC9O60706 1549 aa54.34■■■■■ 6.29
MMP28-203ENST00000612672 CCDC180Q9P1Z9 1646 aa53.93■■■■■ 6.22
MMP28-203ENST00000612672 RB1CC1Q8TDY2 1594 aa51.46■■■■■ 5.83
MMP28-203ENST00000612672 DNAJC5BQ9UF47 199 aa51.4■■■■■ 5.82
MMP28-203ENST00000612672 NACADO15069 1562 aa51■■■■■ 5.75
MMP28-203ENST00000612672 UNC13AQ9UPW8 1703 aa50.56■■■■■ 5.68
MMP28-203ENST00000612672 DCAF8L2P0C7V8 631 aa50.52■■■■■ 5.68
MMP28-203ENST00000612672 PABPN1Q86U42 306 aaKnown RBP eCLIP50.47■■■■■ 5.67
MMP28-203ENST00000612672 BICRAQ9NZM4 1560 aa50.17■■■■■ 5.62
MMP28-203ENST00000612672 MYO15BQ96JP2 1530 aa50.14■■■■■ 5.62
MMP28-203ENST00000612672 ZCCHC6Q5VYS8 1495 aaKnown RBP49.57■■■■■ 5.53
MMP28-203ENST00000612672 DCAF1Q9Y4B6 1507 aa49.38■■■■■ 5.5
MMP28-203ENST00000612672 SHROOM4Q9ULL8 1493 aa49.2■■■■■ 5.47
MMP28-203ENST00000612672 SCRIBQ14160 1630 aa49.17■■■■■ 5.46
MMP28-203ENST00000612672 CC2D2AQ9P2K1 1620 aa49.09■■■■■ 5.45
MMP28-203ENST00000612672 CECR2Q9BXF3 1484 aa48.94■■■■■ 5.43
MMP28-203ENST00000612672 EIF4G1Q04637 1599 aaKnown RBP48.87■■■■■ 5.41
MMP28-203ENST00000612672 DNAJC5Q9H3Z4 198 aa47.33■■■■■ 5.17
MMP28-203ENST00000612672 NCAPD3P42695 1498 aa47.08■■■■■ 5.13
MMP28-203ENST00000612672 ATAD2BQ9ULI0 1458 aa46.94■■■■■ 5.1
MMP28-203ENST00000612672 CUX2O14529 1486 aa46.91■■■■■ 5.1
MMP28-203ENST00000612672 SMARCA4P51532 1647 aa46.85■■■■■ 5.09
MMP28-203ENST00000612672 ERCC6Q03468 1493 aa46.82■■■■■ 5.09
MMP28-203ENST00000612672 HMGXB3Q12766 1538 aa46.75■■■■■ 5.07
MMP28-203ENST00000612672 SMARCA2P51531 1590 aa46.72■■■■■ 5.07
MMP28-203ENST00000612672 NESP48681 1621 aa46.63■■■■■ 5.06
MMP28-203ENST00000612672 BAZ1AQ9NRL2 1556 aaPredicted RBP46.45■■■■■ 5.03
MMP28-203ENST00000612672 BAZ1BQ9UIG0 1483 aaKnown RBP46.42■■■■■ 5.02
MMP28-203ENST00000612672 PEG3Q9GZU2 1588 aa46.37■■■■■ 5.01
MMP28-203ENST00000612672 THOC2Q8NI27 1593 aaKnown RBP46.27■■■■■ 5
MMP28-203ENST00000612672 MROH2BQ7Z745 1585 aa46.19■■■■■ 4.99
MMP28-203ENST00000612672 LAMC3Q9Y6N6 1575 aa46.11■■■■■ 4.97
MMP28-203ENST00000612672 KIF21AQ7Z4S6 1674 aa46.07■■■■■ 4.97
MMP28-203ENST00000612672 PDS5BQ9NTI5 1447 aa45.76■■■■■ 4.92
MMP28-203ENST00000612672 WIZO95785 1651 aa45.66■■■■■ 4.9
MMP28-203ENST00000612672 CADPSQ9ULU8 1353 aa45.6■■■■■ 4.89
MMP28-203ENST00000612672 MRC2Q9UBG0 1479 aa45.49■■■■■ 4.87
MMP28-203ENST00000612672 WDR62O43379 1518 aa45.46■■■■■ 4.87
MMP28-203ENST00000612672 CEP164Q9UPV0 1460 aa45.21■■■■■ 4.83
MMP28-203ENST00000612672 FANCD2Q9BXW9 1451 aa45.15■■■■■ 4.82
MMP28-203ENST00000612672 TRIM41Q8WV44 630 aa45.09■■■■■ 4.81
MMP28-203ENST00000612672 CFTRP13569 1480 aa45.05■■■■■ 4.8
MMP28-203ENST00000612672 RSF1Q96T23 1441 aaPredicted RBP45.01■■■■■ 4.8
MMP28-203ENST00000612672 TOP2AP11388 1531 aaKnown RBP44.96■■■■■ 4.79
MMP28-203ENST00000612672 URB2Q14146 1524 aaKnown RBP44.9■■■■■ 4.78
MMP28-203ENST00000612672 PRDM2Q13029 1718 aa44.7■■■■■ 4.75
MMP28-203ENST00000612672 OSCARQ8IYS5 282 aa44.57■■■■■ 4.73
MMP28-203ENST00000612672 CCDC88BA6NC98 1476 aa44.46■■■■■ 4.71
MMP28-203ENST00000612672 ZNF608Q9ULD9 1512 aaPredicted RBP44.42■■■■■ 4.7
MMP28-203ENST00000612672 RIMBP3CA6NJZ7 1639 aa44.31■■■■■ 4.68
MMP28-203ENST00000612672 RIMBP3BA6NNM3 1639 aa44.31■■■■■ 4.68
MMP28-203ENST00000612672 RIMBP3Q9UFD9 1639 aa44.31■■■■■ 4.68
MMP28-203ENST00000612672 IFT140Q96RY7 1462 aa44.3■■■■■ 4.68
MMP28-203ENST00000612672 TOPBP1Q92547 1522 aa44.29■■■■■ 4.68
MMP28-203ENST00000612672 EIF4G3O43432 1585 aaKnown RBP44.16■■■■■ 4.66
MMP28-203ENST00000612672 DNMBPQ6XZF7 1577 aa44.08■■■■■ 4.65
MMP28-203ENST00000612672 ARHGEF11O15085 1522 aa44.07■■■■■ 4.65
MMP28-203ENST00000612672 TARBP1Q13395 1621 aaKnown RBP43.99■■■■■ 4.63
MMP28-203ENST00000612672 ABCC8Q09428 1581 aa43.98■■■■■ 4.63
MMP28-203ENST00000612672 CHD1O14646 1710 aa43.95■■■■■ 4.63
MMP28-203ENST00000612672 AQRO60306 1485 aaKnown RBP eCLIP43.89■■■■■ 4.62
MMP28-203ENST00000612672 POLA1P09884 1462 aaPredicted RBP43.82■■■■■ 4.6
MMP28-203ENST00000612672 RAD54L2Q9Y4B4 1467 aa43.69■■■■■ 4.58
MMP28-203ENST00000612672 ARAP1Q96P48 1450 aa43.65■■■■■ 4.58
MMP28-203ENST00000612672 CYB5RLQ6IPT4 315 aa43.63■■■■■ 4.57
MMP28-203ENST00000612672 FBLN2P98095 1184 aa43.53■■■■■ 4.56
MMP28-203ENST00000612672 TDRD9Q8NDG6 1382 aaKnown RBP43.53■■■■■ 4.56
MMP28-203ENST00000612672 SOGA1O94964 1423 aa43.5■■■■■ 4.55
MMP28-203ENST00000612672 FGD5Q6ZNL6 1462 aa43.48■■■■■ 4.55
MMP28-203ENST00000612672 SNAPC4Q5SXM2 1469 aa43.45■■■■■ 4.55
MMP28-203ENST00000612672 CUX1P39880 1505 aa43.43■■■■■ 4.54
MMP28-203ENST00000612672 CLASP1Q7Z460 1538 aa43.39■■■■■ 4.54
MMP28-203ENST00000612672 WDR97A6NE52 1622 aa43.37■■■■■ 4.53
MMP28-203ENST00000612672 MAGI1Q96QZ7 1491 aaPredicted RBP43.23■■■■■ 4.51
MMP28-203ENST00000612672 TRHP20396 242 aaPredicted RBP43.22■■■■■ 4.51
MMP28-203ENST00000612672 SYNJ1O43426 1573 aa43.2■■■■■ 4.51
MMP28-203ENST00000612672 GRIN2BQ13224 1484 aa43.19■■■■■ 4.5
MMP28-203ENST00000612672 PBRM1Q86U86 1689 aa43.16■■■■■ 4.5
MMP28-203ENST00000612672 CHMP7Q8WUX9 453 aaPredicted RBP43.11■■■■■ 4.49
MMP28-203ENST00000612672 SYNJ2O15056 1496 aa43.11■■■■■ 4.49
MMP28-203ENST00000612672 ABCA5Q8WWZ7 1642 aa43■■■■■ 4.47
MMP28-203ENST00000612672 GAPVD1Q14C86 1478 aa43■■■■■ 4.47
MMP28-203ENST00000612672 ABCA10Q8WWZ4 1543 aa42.92■■■■■ 4.46
MMP28-203ENST00000612672 ERCC6L2Q5T890 1561 aa42.78■■■■■ 4.44
MMP28-203ENST00000612672 ADAMTS12P58397 1594 aa42.69■■■■■ 4.43
MMP28-203ENST00000612672 GRIN2AQ12879 1464 aa42.68■■■■■ 4.42
MMP28-203ENST00000612672 CEP170Q5SW79 1584 aa42.65■■■■■ 4.42
MMP28-203ENST00000612672 BIVM-ERCC5R4GMW8 1640 aa42.62■■■■■ 4.41
MMP28-203ENST00000612672 SUPT5HO00267 1087 aaKnown RBP42.6■■■■■ 4.41
MMP28-203ENST00000612672 NUP160Q12769 1436 aa42.57■■■■■ 4.41
MMP28-203ENST00000612672 WRNQ14191 1432 aaPredicted RBP eCLIP42.57■■■■■ 4.41
MMP28-203ENST00000612672 TOP2BQ02880 1626 aa42.57■■■■■ 4.4
MMP28-203ENST00000612672 SHROOM2Q13796 1616 aa42.5■■■■■ 4.39
MMP28-203ENST00000612672 FHAD1B1AJZ9 1412 aa42.4■■■■■ 4.38
MMP28-203ENST00000612672 ERICH3Q5RHP9 1530 aa42.36■■■■■ 4.37
MMP28-203ENST00000612672 KIF13AQ9H1H9 1805 aa42.23■■■■■ 4.35
MMP28-203ENST00000612672 AEBP2Q6ZN18 517 aaPredicted RBP42.19■■■■■ 4.34
MMP28-203ENST00000612672 PRG4Q92954 1404 aaPredicted RBP42.14■■■■■ 4.34
MMP28-203ENST00000612672 RUSC2Q8N2Y8 1516 aa42.12■■■■■ 4.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms